3OFK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF N-METHYLTRANSFERASE NODS FROM BRADYRHIZ JAPONICUM WM9 IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE (SA
• Keywords: NODS, N-METHYLTRANSFERASE, SAH, SAM, NOD FACTOR, NODULATION, FIXATION, SYMBIOSIS, ALPHA/BETA STRUCTURE, VARIANT OF ROSSM SAM-DEPENDENT N-METHYLTRANSFERASE, S-ADENOSYL-L-METHIONINE LIPOCHITOOLIGOSACCHARIDE, METHYLATION, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3OFK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NODULATION PROTEIN S	A	204	1600	0
2	Protein	NODULATION PROTEIN S	B	196	1539	0
3	Protein	NODULATION PROTEIN S	C	202	1588	0
4	Protein	NODULATION PROTEIN S	D	181	1406	0
5	Ligand	NODULATION PROTEIN S	A	1	0	26
6	Ligand	NODULATION PROTEIN S	B	1	0	26
7	Ligand	NODULATION PROTEIN S	C	1	0	26
8	Ligand	NODULATION PROTEIN S	D	1	0	26
9	Water			846	0	846
total				1633	6133	950

Proteins

Unit 1	ASP -4 PRO -3 PHE -2 THR -1 MET 0 VAL 1 SER 2 VAL 3 ASP 4 ASN 5 THR 6 TYR 7 GLN 8 SER 9 LEU 10 GLU 11 ARG 12 GLU 13 LEU 14 ALA 15 ASN 16 ASP 17 ASP 18 PRO 19 TRP 20 ARG 21 LEU 22 ASP 23 ASP 24 ASN 25 PRO 26 PHE 27 GLU 28 ARG 29 GLU 30 ARG 31 HIS 32 THR 33 GLN 34 LEU 35 LEU 36 ARG 37 LEU 38 SER 39 LEU 40 SER 41 SER 42 GLY 43 ALA 44 VAL 45 SER 46 ASN 47 GLY 48 LEU 49 GLU 50 ILE 51 GLY 52 CYS 53 ALA 54 ALA 55 GLY 56 ALA 57 PHE 58 THR 59 GLU 60 LYS 61 LEU 62 ALA 63 PRO 64 HIS 65 CYS 66 LYS 67 ARG 68 LEU 69 THR 70 VAL 71 ILE 72 ASP 73 VAL 74 MET 75 PRO 76 ARG 77 ALA 78 ILE 79 GLY 80 ARG 81 ALA 82 CYS 83 GLN 84 ARG 85 THR 86 LYS 87 ARG 88 TRP 89 SER 90 HIS 91 ILE 92 SER 93 TRP 94 ALA 95 ALA 96 THR 97 ASP 98 ILE 99 LEU 100 GLN 101 PHE 102 SER 103 THR 104 ALA 105 GLU 106 LEU 107 PHE 108 ASP 109 LEU 110 ILE 111 VAL 112 VAL 113 ALA 114 GLU 115 VAL 116 LEU 117 TYR 118 TYR 119 LEU 120 GLU 121 ASP 122 MET 123 THR 124 GLN 125 MET 126 ARG 127 THR 128 ALA 129 ILE 130 ASP 131 ASN 132 MET 133 VAL 134 LYS 135 MET 136 LEU 137 ALA 138 PRO 139 GLY 140 GLY 141 HIS 142 LEU 143 VAL 144 PHE 145 GLY 146 SER 147 ALA 148 ARG 149 ASP 150 ALA 151 THR 152 CYS 153 ARG 154 ARG 155 TRP 156 GLY 157 HIS 158 VAL 159 ALA 160 GLY 161 ALA 162 GLU 163 THR 164 VAL 165 ILE 166 THR 167 ILE 168 LEU 169 THR 170 GLU 171 ALA 172 LEU 173 THR 174 GLU 175 VAL 176 GLU 177 ARG 178 VAL 179 GLN 180 CYS 181 GLN 182 GLY 183 GLN 184 SER 185 ALA 186 ASP 187 GLU 188 ASP 189 CYS 190 LEU 191 LEU 192 ALA 193 ARG 194 PHE 195 ARG 196 ASN 197 PRO 198 GLU 199
Unit 2	ASP 4 ASN 5 THR 6 TYR 7 GLN 8 SER 9 LEU 10 GLU 11 ARG 12 GLU 13 LEU 14 ALA 15 ASN 16 ASP 17 ASP 18 PRO 19 TRP 20 ARG 21 LEU 22 ASP 23 ASP 24 ASN 25 PRO 26 PHE 27 GLU 28 ARG 29 GLU 30 ARG 31 HIS 32 THR 33 GLN 34 LEU 35 LEU 36 ARG 37 LEU 38 SER 39 LEU 40 SER 41 SER 42 GLY 43 ALA 44 VAL 45 SER 46 ASN 47 GLY 48 LEU 49 GLU 50 ILE 51 GLY 52 CYS 53 ALA 54 ALA 55 GLY 56 ALA 57 PHE 58 THR 59 GLU 60 LYS 61 LEU 62 ALA 63 PRO 64 HIS 65 CYS 66 LYS 67 ARG 68 LEU 69 THR 70 VAL 71 ILE 72 ASP 73 VAL 74 MET 75 PRO 76 ARG 77 ALA 78 ILE 79 GLY 80 ARG 81 ALA 82 CYS 83 GLN 84 ARG 85 THR 86 LYS 87 ARG 88 TRP 89 SER 90 HIS 91 ILE 92 SER 93 TRP 94 ALA 95 ALA 96 THR 97 ASP 98 ILE 99 LEU 100 GLN 101 PHE 102 SER 103 THR 104 ALA 105 GLU 106 LEU 107 PHE 108 ASP 109 LEU 110 ILE 111 VAL 112 VAL 113 ALA 114 GLU 115 VAL 116 LEU 117 TYR 118 TYR 119 LEU 120 GLU 121 ASP 122 MET 123 THR 124 GLN 125 MET 126 ARG 127 THR 128 ALA 129 ILE 130 ASP 131 ASN 132 MET 133 VAL 134 LYS 135 MET 136 LEU 137 ALA 138 PRO 139 GLY 140 GLY 141 HIS 142 LEU 143 VAL 144 PHE 145 GLY 146 SER 147 ALA 148 ARG 149 ASP 150 ALA 151 THR 152 CYS 153 ARG 154 ARG 155 TRP 156 GLY 157 HIS 158 VAL 159 ALA 160 GLY 161 ALA 162 GLU 163 THR 164 VAL 165 ILE 166 THR 167 ILE 168 LEU 169 THR 170 GLU 171 ALA 172 LEU 173 THR 174 GLU 175 VAL 176 GLU 177 ARG 178 VAL 179 GLN 180 CYS 181 GLN 182 GLY 183 GLN 184 SER 185 ALA 186 ASP 187 GLU 188 ASP 189 CYS 190 LEU 191 LEU 192 ALA 193 ARG 194 PHE 195 ARG 196 ASN 197 PRO 198 GLU 199
Unit 3	ASP 4 ASN 5 THR 6 TYR 7 GLN 8 SER 9 LEU 10 GLU 11 ARG 12 GLU 13 LEU 14 ALA 15 ASN 16 ASP 17 ASP 18 PRO 19 TRP 20 ARG 21 LEU 22 ASP 23 ASP 24 ASN 25 PRO 26 PHE 27 GLU 28 ARG 29 GLU 30 ARG 31 HIS 32 THR 33 GLN 34 LEU 35 LEU 36 ARG 37 LEU 38 SER 39 LEU 40 SER 41 SER 42 GLY 43 ALA 44 VAL 45 SER 46 ASN 47 GLY 48 LEU 49 GLU 50 ILE 51 GLY 52 CYS 53 ALA 54 ALA 55 GLY 56 ALA 57 PHE 58 THR 59 GLU 60 LYS 61 LEU 62 ALA 63 PRO 64 HIS 65 CYS 66 LYS 67 ARG 68 LEU 69 THR 70 VAL 71 ILE 72 ASP 73 VAL 74 MET 75 PRO 76 ARG 77 ALA 78 ILE 79 GLY 80 ARG 81 ALA 82 CYS 83 GLN 84 ARG 85 THR 86 LYS 87 ARG 88 TRP 89 SER 90 HIS 91 ILE 92 SER 93 TRP 94 ALA 95 ALA 96 THR 97 ASP 98 ILE 99 LEU 100 GLN 101 PHE 102 SER 103 THR 104 ALA 105 GLU 106 LEU 107 PHE 108 ASP 109 LEU 110 ILE 111 VAL 112 VAL 113 ALA 114 GLU 115 VAL 116 LEU 117 TYR 118 TYR 119 LEU 120 GLU 121 ASP 122 MET 123 THR 124 GLN 125 MET 126 ARG 127 THR 128 ALA 129 ILE 130 ASP 131 ASN 132 MET 133 VAL 134 LYS 135 MET 136 LEU 137 ALA 138 PRO 139 GLY 140 GLY 141 HIS 142 LEU 143 VAL 144 PHE 145 GLY 146 SER 147 ALA 148 ARG 149 ASP 150 ALA 151 THR 152 CYS 153 ARG 154 ARG 155 TRP 156 GLY 157 HIS 158 VAL 159 ALA 160 GLY 161 ALA 162 GLU 163 THR 164 VAL 165 ILE 166 THR 167 ILE 168 LEU 169 THR 170 GLU 171 ALA 172 LEU 173 THR 174 GLU 175 VAL 176 GLU 177 ARG 178 VAL 179 GLN 180 CYS 181 GLN 182 GLY 183 GLN 184 SER 185 ALA 186 ASP 187 GLU 188 ASP 189 CYS 190 LEU 191 LEU 192 ALA 193 ARG 194 PHE 195 ARG 196 ASN 197 PRO 198 GLU 199 ARG 200 SER 201 SER 202 ILE 203 ARG 204 PRO 205
Unit 4	ASP 23 ASP 24 ASN 25 PRO 26 PHE 27 GLU 28 ARG 29 GLU 30 ARG 31 HIS 32 THR 33 GLN 34 LEU 35 LEU 36 ARG 37 LEU 38 SER 39 LEU 40 SER 41 SER 42 GLY 43 ALA 44 VAL 45 SER 46 ASN 47 GLY 48 LEU 49 GLU 50 ILE 51 GLY 52 CYS 53 ALA 54 ALA 55 GLY 56 ALA 57 PHE 58 THR 59 GLU 60 LYS 61 LEU 62 ALA 63 PRO 64 HIS 65 CYS 66 LYS 67 ARG 68 LEU 69 THR 70 VAL 71 ILE 72 ASP 73 VAL 74 MET 75 PRO 76 ARG 77 ALA 78 ILE 79 GLY 80 ARG 81 ALA 82 CYS 83 GLN 84 ARG 85 THR 86 LYS 87 ARG 88 TRP 89 SER 90 HIS 91 ILE 92 SER 93 TRP 94 ALA 95 ALA 96 THR 97 ASP 98 ILE 99 LEU 100 GLN 101 PHE 102 SER 103 THR 104 ALA 105 GLU 106 LEU 107 PHE 108 ASP 109 LEU 110 ILE 111 VAL 112 VAL 113 ALA 114 GLU 115 VAL 116 LEU 117 TYR 118 TYR 119 LEU 120 GLU 121 ASP 122 MET 123 THR 124 GLN 125 MET 126 ARG 127 THR 128 ALA 129 ILE 130 ASP 131 ASN 132 MET 133 VAL 134 LYS 135 MET 136 LEU 137 ALA 138 PRO 139 GLY 140 GLY 141 HIS 142 LEU 143 VAL 144 PHE 145 GLY 146 SER 147 ALA 148 ARG 149 ASP 150 ALA 151 THR 152 CYS 153 ARG 154 ARG 155 TRP 156 GLY 157 HIS 158 VAL 159 ALA 160 GLY 161 ALA 162 GLU 163 THR 164 VAL 165 ILE 166 THR 167 ILE 168 LEU 169 THR 170 GLU 171 ALA 172 LEU 173 THR 174 GLU 175 VAL 176 GLU 177 ARG 178 VAL 179 GLN 180 CYS 181 GLN 182 GLY 183 GLN 184 SER 185 ALA 186 ASP 187 GLU 188 ASP 189 CYS 190 LEU 191 LEU 192 ALA 193 ARG 194 PHE 195 ARG 196 ASN 197 PRO 198 GLU 199 ARG 200 SER 201 SER 202 ILE 203

Ligands

Unit 5	SAH 217
Unit 6	SAH 217
Unit 7	SAH 217
Unit 8	SAH 217