3ODH - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF OKRAI/DNA COMPLEX
• Keywords: ALPHA AND BETA PROTEINS (A/B), RESTRICTION ENDONUCLEASE-LIKE PHOSPHODIESTERASE, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3ODH	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	OKRAI ENDONUCLEASE	A	194	1506	0
2	Protein	OKRAI ENDONUCLEASE	B	192	1471	0
3	Protein	OKRAI ENDONUCLEASE	E	194	1516	0
4	Protein	OKRAI ENDONUCLEASE	F	194	1514	0
5	Other macromolecule		C	12	243	0
6	Other macromolecule		D	12	243	0
7	Other macromolecule		G	12	243	0
8	Other macromolecule		H	12	243	0
9	Ligand	OKRAI ENDONUCLEASE	A	2	0	2
10	Ligand	OKRAI ENDONUCLEASE	B	1	0	1
11	Ligand	OKRAI ENDONUCLEASE	E	1	0	1
12	Ligand	OKRAI ENDONUCLEASE	F	1	0	1
13	Ligand		H	1	0	1
14	Water			710	0	710
total				1538	6979	716

Proteins

Unit 1	MET 1 LYS 2 ILE 3 LYS 4 ARG 5 ILE 6 GLU 7 VAL 8 LEU 9 ILE 10 ASN 11 ASN 12 GLY 13 SER 14 VAL 15 PRO 16 GLY 17 ILE 18 PRO 19 MET 20 ILE 21 LEU 22 ASN 23 GLU 24 ILE 25 GLN 26 ASP 27 ALA 28 ILE 29 LYS 30 THR 31 VAL 32 SER 33 TRP 34 PRO 35 GLU 36 GLY 37 ASN 38 ASN 39 SER 40 PHE 41 VAL 42 ILE 43 ASN 44 PRO 45 VAL 46 ARG 47 LYS 48 GLY 49 ASN 50 GLY 51 VAL 52 LYS 53 PRO 54 ILE 55 LYS 56 ASN 57 SER 58 CYS 59 MET 60 ARG 61 HIS 62 LEU 63 HIS 64 GLN 65 LYS 66 GLY 67 TRP 68 ALA 69 LEU 70 GLU 71 HIS 72 PRO 73 VAL 74 ARG 75 ILE 76 LYS 77 ALA 78 GLU 79 MET 80 ARG 81 PRO 82 GLY 83 PRO 84 LEU 85 ASP 86 ALA 87 VAL 88 LYS 89 MET 90 ILE 91 GLY 92 GLY 93 LYS 94 ALA 95 PHE 96 ALA 97 LEU 98 GLU 99 TRP 100 GLU 101 THR 102 GLY 103 ASN 104 ILE 105 SER 106 SER 107 SER 108 HIS 109 ARG 110 ALA 111 ILE 112 ASN 113 LYS 114 MET 115 VAL 116 MET 117 GLY 118 MET 119 LEU 120 GLU 121 ARG 122 VAL 123 ILE 124 ILE 125 GLY 126 GLY 127 VAL 128 LEU 129 ILE 130 LEU 131 PRO 132 SER 133 ARG 134 ASP 135 MET 136 TYR 137 ASN 138 TYR 139 LEU 140 THR 141 ASP 142 ARG 143 VAL 144 GLY 145 ASN 146 PHE 147 ARG 148 GLU 149 LEU 150 GLU 151 PRO 152 TYR 153 PHE 154 SER 155 VAL 156 TRP 157 ARG 158 GLN 159 PHE 160 ASN 161 LEU 162 LYS 163 ASP 164 ALA 165 TYR 166 LEU 167 ALA 168 ILE 169 VAL 170 GLU 171 ILE 172 GLU 173 HIS 174 ASP 175 SER 176 VAL 177 ASP 178 ALA 179 GLN 180 VAL 181 SER 182 LEU 183 ILE 184 PRO 185 LYS 186 GLY 187 THR 188 ASP 189 GLY 190 ARG 191 ALA 192 ILE 193 ARG 194
Unit 2	MET 1 LYS 2 ILE 3 LYS 4 ARG 5 ILE 6 GLU 7 VAL 8 LEU 9 ILE 10 ASN 11 ASN 12 GLY 13 SER 14 VAL 15 PRO 16 GLY 17 ILE 18 PRO 19 MET 20 ILE 21 LEU 22 ASN 23 GLU 24 ILE 25 GLN 26 ASP 27 ALA 28 ILE 29 LYS 30 THR 31 VAL 32 SER 33 TRP 34 PRO 35 GLU 36 GLY 37 ASN 38 ASN 39 SER 40 PHE 41 VAL 42 ILE 43 ASN 44 PRO 45 VAL 46 ARG 47 LYS 48 GLY 49 ASN 50 GLY 51 VAL 52 LYS 53 PRO 54 ILE 55 LYS 56 ASN 57 SER 58 CYS 59 MET 60 ARG 61 HIS 62 LEU 63 HIS 64 GLN 65 LYS 66 GLY 67 TRP 68 ALA 69 LEU 70 GLU 71 HIS 72 PRO 73 VAL 74 ARG 75 ILE 76 LYS 77 ALA 78 GLU 79 MET 80 ARG 81 PRO 82 GLY 83 PRO 84 LEU 85 ASP 86 ALA 87 VAL 88 LYS 89 MET 90 ILE 91 GLY 92 GLY 93 LYS 94 ALA 95 PHE 96 ALA 97 LEU 98 GLU 99 TRP 100 GLU 101 THR 102 GLY 103 ASN 104 ILE 105 SER 106 SER 107 SER 108 HIS 109 ARG 110 ALA 111 ILE 112 ASN 113 LYS 114 MET 115 VAL 116 MET 117 GLY 118 MET 119 LEU 120 GLU 121 ARG 122 VAL 123 ILE 124 ILE 125 GLY 126 GLY 127 VAL 128 LEU 129 ILE 130 LEU 131 PRO 132 SER 133 ARG 134 ASP 135 MET 136 TYR 137 ASN 138 TYR 139 LEU 140 THR 141 ASP 142 ARG 143 VAL 144 GLY 145 ASN 146 PHE 147 ARG 148 GLU 149 LEU 150 GLU 151 PRO 152 TYR 153 PHE 154 SER 155 VAL 156 TRP 157 ARG 158 GLN 159 PHE 160 ASN 161 LEU 162 LYS 163 ASP 164 ALA 165 TYR 166 LEU 167 ALA 168 ILE 169 VAL 170 GLU 171 ILE 172 GLU 173 HIS 174 ASP 175 SER 176 VAL 177 ASP 178 ALA 179 GLN 180 VAL 181 SER 182 LEU 183 ILE 184 PRO 185 LYS 186 GLY 187 THR 188 ASP 189 GLY 190 ARG 191 ALA 192
Unit 3	MET 1 LYS 2 ILE 3 LYS 4 ARG 5 ILE 6 GLU 7 VAL 8 LEU 9 ILE 10 ASN 11 ASN 12 GLY 13 SER 14 VAL 15 PRO 16 GLY 17 ILE 18 PRO 19 MET 20 ILE 21 LEU 22 ASN 23 GLU 24 ILE 25 GLN 26 ASP 27 ALA 28 ILE 29 LYS 30 THR 31 VAL 32 SER 33 TRP 34 PRO 35 GLU 36 GLY 37 ASN 38 ASN 39 SER 40 PHE 41 VAL 42 ILE 43 ASN 44 PRO 45 VAL 46 ARG 47 LYS 48 GLY 49 ASN 50 GLY 51 VAL 52 LYS 53 PRO 54 ILE 55 LYS 56 ASN 57 SER 58 CYS 59 MET 60 ARG 61 HIS 62 LEU 63 HIS 64 GLN 65 LYS 66 GLY 67 TRP 68 ALA 69 LEU 70 GLU 71 HIS 72 PRO 73 VAL 74 ARG 75 ILE 76 LYS 77 ALA 78 GLU 79 MET 80 ARG 81 PRO 82 GLY 83 PRO 84 LEU 85 ASP 86 ALA 87 VAL 88 LYS 89 MET 90 ILE 91 GLY 92 GLY 93 LYS 94 ALA 95 PHE 96 ALA 97 LEU 98 GLU 99 TRP 100 GLU 101 THR 102 GLY 103 ASN 104 ILE 105 SER 106 SER 107 SER 108 HIS 109 ARG 110 ALA 111 ILE 112 ASN 113 LYS 114 MET 115 VAL 116 MET 117 GLY 118 MET 119 LEU 120 GLU 121 ARG 122 VAL 123 ILE 124 ILE 125 GLY 126 GLY 127 VAL 128 LEU 129 ILE 130 LEU 131 PRO 132 SER 133 ARG 134 ASP 135 MET 136 TYR 137 ASN 138 TYR 139 LEU 140 THR 141 ASP 142 ARG 143 VAL 144 GLY 145 ASN 146 PHE 147 ARG 148 GLU 149 LEU 150 GLU 151 PRO 152 TYR 153 PHE 154 SER 155 VAL 156 TRP 157 ARG 158 GLN 159 PHE 160 ASN 161 LEU 162 LYS 163 ASP 164 ALA 165 TYR 166 LEU 167 ALA 168 ILE 169 VAL 170 GLU 171 ILE 172 GLU 173 HIS 174 ASP 175 SER 176 VAL 177 ASP 178 ALA 179 GLN 180 VAL 181 SER 182 LEU 183 ILE 184 PRO 185 LYS 186 GLY 187 THR 188 ASP 189 GLY 190 ARG 191 ALA 192 ILE 193 ARG 194
Unit 4	MET 1 LYS 2 ILE 3 LYS 4 ARG 5 ILE 6 GLU 7 VAL 8 LEU 9 ILE 10 ASN 11 ASN 12 GLY 13 SER 14 VAL 15 PRO 16 GLY 17 ILE 18 PRO 19 MET 20 ILE 21 LEU 22 ASN 23 GLU 24 ILE 25 GLN 26 ASP 27 ALA 28 ILE 29 LYS 30 THR 31 VAL 32 SER 33 TRP 34 PRO 35 GLU 36 GLY 37 ASN 38 ASN 39 SER 40 PHE 41 VAL 42 ILE 43 ASN 44 PRO 45 VAL 46 ARG 47 LYS 48 GLY 49 ASN 50 GLY 51 VAL 52 LYS 53 PRO 54 ILE 55 LYS 56 ASN 57 SER 58 CYS 59 MET 60 ARG 61 HIS 62 LEU 63 HIS 64 GLN 65 LYS 66 GLY 67 TRP 68 ALA 69 LEU 70 GLU 71 HIS 72 PRO 73 VAL 74 ARG 75 ILE 76 LYS 77 ALA 78 GLU 79 MET 80 ARG 81 PRO 82 GLY 83 PRO 84 LEU 85 ASP 86 ALA 87 VAL 88 LYS 89 MET 90 ILE 91 GLY 92 GLY 93 LYS 94 ALA 95 PHE 96 ALA 97 LEU 98 GLU 99 TRP 100 GLU 101 THR 102 GLY 103 ASN 104 ILE 105 SER 106 SER 107 SER 108 HIS 109 ARG 110 ALA 111 ILE 112 ASN 113 LYS 114 MET 115 VAL 116 MET 117 GLY 118 MET 119 LEU 120 GLU 121 ARG 122 VAL 123 ILE 124 ILE 125 GLY 126 GLY 127 VAL 128 LEU 129 ILE 130 LEU 131 PRO 132 SER 133 ARG 134 ASP 135 MET 136 TYR 137 ASN 138 TYR 139 LEU 140 THR 141 ASP 142 ARG 143 VAL 144 GLY 145 ASN 146 PHE 147 ARG 148 GLU 149 LEU 150 GLU 151 PRO 152 TYR 153 PHE 154 SER 155 VAL 156 TRP 157 ARG 158 GLN 159 PHE 160 ASN 161 LEU 162 LYS 163 ASP 164 ALA 165 TYR 166 LEU 167 ALA 168 ILE 169 VAL 170 GLU 171 ILE 172 GLU 173 HIS 174 ASP 175 SER 176 VAL 177 ASP 178 ALA 179 GLN 180 VAL 181 SER 182 LEU 183 ILE 184 PRO 185 LYS 186 GLY 187 THR 188 ASP 189 GLY 190 ARG 191 ALA 192 ILE 193 ARG 194

Other macromolecules

Unit 5	DT 1 DA 2 DT 3 DG 4 DG 5 DA 6 DT 7 DC 8 DC 9 DA 10 DT 11 DA 12
Unit 6	DT 1 DA 2 DT 3 DG 4 DG 5 DA 6 DT 7 DC 8 DC 9 DA 10 DT 11 DA 12
Unit 7	DT 1 DA 2 DT 3 DG 4 DG 5 DA 6 DT 7 DC 8 DC 9 DA 10 DT 11 DA 12
Unit 8	DT 1 DA 2 DT 3 DG 4 DG 5 DA 6 DT 7 DC 8 DC 9 DA 10 DT 11 DA 12

Ligands

Unit 9	CA 195 CA 196
Unit 10	CA 195
Unit 11	CA 195
Unit 12	CA 195
Unit 13	CA 13