3O9Z - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE WLBA (WBPB) DEHYDROGENASE FROM THER THERMOPHILUS IN COMPLEX WITH NAD AND ALPHA-KETOGLUTARATE AT ANGSTROM RESOLUTION
• Keywords: OXIDOREDUCTASE, SUGAR BIOSYNTHESIS, DEHYDROGENASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3O9Z	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	A	310	2451	0
2	Protein	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	B	310	2451	0
3	Protein	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	C	310	2451	0
4	Protein	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	D	309	2446	0
5	Ligand	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	A	3	0	55
6	Ligand	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	B	5	0	63
7	Ligand	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	C	4	0	59
8	Ligand	LIPOPOLYSACCARIDE BIOSYNTHESIS PROTEIN WBPB	D	3	0	55
9	Water			1216	0	1216
total				2470	9799	1448

Proteins

Unit 1	MET 1 THR 2 ARG 3 PHE 4 ALA 5 LEU 6 THR 7 GLY 8 LEU 9 ALA 10 GLY 11 TYR 12 ILE 13 ALA 14 PRO 15 ARG 16 HIS 17 LEU 18 LYS 19 ALA 20 ILE 21 LYS 22 GLU 23 VAL 24 GLY 25 GLY 26 VAL 27 LEU 28 VAL 29 ALA 30 SER 31 LEU 32 ASP 33 PRO 34 ALA 35 THR 36 ASN 37 VAL 38 GLY 39 LEU 40 VAL 41 ASP 42 SER 43 PHE 44 PHE 45 PRO 46 GLU 47 ALA 48 GLU 49 PHE 50 PHE 51 THR 52 GLU 53 PRO 54 GLU 55 ALA 56 PHE 57 GLU 58 ALA 59 TYR 60 LEU 61 GLU 62 ASP 63 LEU 64 ARG 65 ASP 66 ARG 67 GLY 68 GLU 69 GLY 70 VAL 71 ASP 72 TYR 73 LEU 74 SER 75 ILE 76 ALA 77 SER 78 PRO 79 ASN 80 HIS 81 LEU 82 HIS 83 TYR 84 PRO 85 GLN 86 ILE 87 ARG 88 MET 89 ALA 90 LEU 91 ARG 92 LEU 93 GLY 94 ALA 95 ASN 96 ALA 97 LEU 98 SER 99 GLU 100 LYS 101 PRO 102 LEU 103 VAL 104 LEU 105 TRP 106 PRO 107 GLU 108 GLU 109 ILE 110 ALA 111 ARG 112 LEU 113 LYS 114 GLU 115 LEU 116 GLU 117 ALA 118 ARG 119 THR 120 GLY 121 ARG 122 ARG 123 VAL 124 TYR 125 THR 126 VAL 127 LEU 128 GLN 129 LEU 130 ARG 131 VAL 132 HIS 133 PRO 134 SER 135 LEU 136 LEU 137 ALA 138 LEU 139 LYS 140 GLU 141 ARG 142 LEU 143 GLY 144 GLN 145 GLU 146 LYS 147 GLY 148 ALA 149 LYS 150 ASP 151 VAL 152 VAL 153 LEU 154 THR 155 TYR 156 VAL 157 THR 158 GLY 159 ARG 160 GLY 161 LYS 162 TRP 163 TYR 164 GLY 165 LYS 166 SER 167 TRP 168 LYS 169 VAL 170 ASP 171 GLU 172 ALA 173 LYS 174 SER 175 GLY 176 GLY 177 LEU 178 ALA 179 THR 180 ASN 181 ILE 182 GLY 183 ILE 184 HIS 185 PHE 186 PHE 187 ASP 188 LEU 189 LEU 190 ALA 191 TRP 192 LEU 193 PHE 194 GLY 195 ARG 196 ALA 197 LEU 198 HIS 199 VAL 200 GLU 201 VAL 202 HIS 203 ALA 204 ARG 205 THR 206 PRO 207 THR 208 VAL 209 ASN 210 ALA 211 GLY 212 TYR 213 LEU 214 GLU 215 LEU 216 GLU 217 GLY 218 ALA 219 ARG 220 VAL 221 ARG 222 TRP 223 PHE 224 LEU 225 SER 226 ILE 227 ASP 228 PRO 229 SER 230 PHE 231 VAL 232 PRO 233 GLU 234 PRO 235 LEU 236 ARG 237 ARG 238 GLN 239 GLY 240 LYS 241 ARG 242 THR 243 TYR 244 ARG 245 SER 246 ILE 247 ALA 248 VAL 249 ASP 250 GLY 251 GLU 252 GLU 253 VAL 254 GLU 255 PHE 256 SER 257 GLU 258 GLY 259 PHE 260 THR 261 ASP 262 LEU 263 HIS 264 THR 265 GLU 266 VAL 267 TYR 268 ARG 269 LYS 270 THR 271 LEU 272 ALA 273 GLY 274 GLU 275 GLY 276 PHE 277 GLY 278 LEU 279 ASP 280 GLU 281 ALA 282 ALA 283 GLU 284 ALA 285 ILE 286 ARG 287 VAL 288 ALA 289 ALA 290 LEU 291 LEU 292 ARG 293 THR 294 LEU 295 PRO 296 LEU 297 SER 298 GLN 299 PRO 300 SER 301 PRO 302 GLU 303 ASN 304 ARG 305 HIS 306 PRO 307 PHE 308 LEU 309 GLY 310
Unit 2	MET 1 THR 2 ARG 3 PHE 4 ALA 5 LEU 6 THR 7 GLY 8 LEU 9 ALA 10 GLY 11 TYR 12 ILE 13 ALA 14 PRO 15 ARG 16 HIS 17 LEU 18 LYS 19 ALA 20 ILE 21 LYS 22 GLU 23 VAL 24 GLY 25 GLY 26 VAL 27 LEU 28 VAL 29 ALA 30 SER 31 LEU 32 ASP 33 PRO 34 ALA 35 THR 36 ASN 37 VAL 38 GLY 39 LEU 40 VAL 41 ASP 42 SER 43 PHE 44 PHE 45 PRO 46 GLU 47 ALA 48 GLU 49 PHE 50 PHE 51 THR 52 GLU 53 PRO 54 GLU 55 ALA 56 PHE 57 GLU 58 ALA 59 TYR 60 LEU 61 GLU 62 ASP 63 LEU 64 ARG 65 ASP 66 ARG 67 GLY 68 GLU 69 GLY 70 VAL 71 ASP 72 TYR 73 LEU 74 SER 75 ILE 76 ALA 77 SER 78 PRO 79 ASN 80 HIS 81 LEU 82 HIS 83 TYR 84 PRO 85 GLN 86 ILE 87 ARG 88 MET 89 ALA 90 LEU 91 ARG 92 LEU 93 GLY 94 ALA 95 ASN 96 ALA 97 LEU 98 SER 99 GLU 100 LYS 101 PRO 102 LEU 103 VAL 104 LEU 105 TRP 106 PRO 107 GLU 108 GLU 109 ILE 110 ALA 111 ARG 112 LEU 113 LYS 114 GLU 115 LEU 116 GLU 117 ALA 118 ARG 119 THR 120 GLY 121 ARG 122 ARG 123 VAL 124 TYR 125 THR 126 VAL 127 LEU 128 GLN 129 LEU 130 ARG 131 VAL 132 HIS 133 PRO 134 SER 135 LEU 136 LEU 137 ALA 138 LEU 139 LYS 140 GLU 141 ARG 142 LEU 143 GLY 144 GLN 145 GLU 146 LYS 147 GLY 148 ALA 149 LYS 150 ASP 151 VAL 152 VAL 153 LEU 154 THR 155 TYR 156 VAL 157 THR 158 GLY 159 ARG 160 GLY 161 LYS 162 TRP 163 TYR 164 GLY 165 LYS 166 SER 167 TRP 168 LYS 169 VAL 170 ASP 171 GLU 172 ALA 173 LYS 174 SER 175 GLY 176 GLY 177 LEU 178 ALA 179 THR 180 ASN 181 ILE 182 GLY 183 ILE 184 HIS 185 PHE 186 PHE 187 ASP 188 LEU 189 LEU 190 ALA 191 TRP 192 LEU 193 PHE 194 GLY 195 ARG 196 ALA 197 LEU 198 HIS 199 VAL 200 GLU 201 VAL 202 HIS 203 ALA 204 ARG 205 THR 206 PRO 207 THR 208 VAL 209 ASN 210 ALA 211 GLY 212 TYR 213 LEU 214 GLU 215 LEU 216 GLU 217 GLY 218 ALA 219 ARG 220 VAL 221 ARG 222 TRP 223 PHE 224 LEU 225 SER 226 ILE 227 ASP 228 PRO 229 SER 230 PHE 231 VAL 232 PRO 233 GLU 234 PRO 235 LEU 236 ARG 237 ARG 238 GLN 239 GLY 240 LYS 241 ARG 242 THR 243 TYR 244 ARG 245 SER 246 ILE 247 ALA 248 VAL 249 ASP 250 GLY 251 GLU 252 GLU 253 VAL 254 GLU 255 PHE 256 SER 257 GLU 258 GLY 259 PHE 260 THR 261 ASP 262 LEU 263 HIS 264 THR 265 GLU 266 VAL 267 TYR 268 ARG 269 LYS 270 THR 271 LEU 272 ALA 273 GLY 274 GLU 275 GLY 276 PHE 277 GLY 278 LEU 279 ASP 280 GLU 281 ALA 282 ALA 283 GLU 284 ALA 285 ILE 286 ARG 287 VAL 288 ALA 289 ALA 290 LEU 291 LEU 292 ARG 293 THR 294 LEU 295 PRO 296 LEU 297 SER 298 GLN 299 PRO 300 SER 301 PRO 302 GLU 303 ASN 304 ARG 305 HIS 306 PRO 307 PHE 308 LEU 309 GLY 310
Unit 3	MET 1 THR 2 ARG 3 PHE 4 ALA 5 LEU 6 THR 7 GLY 8 LEU 9 ALA 10 GLY 11 TYR 12 ILE 13 ALA 14 PRO 15 ARG 16 HIS 17 LEU 18 LYS 19 ALA 20 ILE 21 LYS 22 GLU 23 VAL 24 GLY 25 GLY 26 VAL 27 LEU 28 VAL 29 ALA 30 SER 31 LEU 32 ASP 33 PRO 34 ALA 35 THR 36 ASN 37 VAL 38 GLY 39 LEU 40 VAL 41 ASP 42 SER 43 PHE 44 PHE 45 PRO 46 GLU 47 ALA 48 GLU 49 PHE 50 PHE 51 THR 52 GLU 53 PRO 54 GLU 55 ALA 56 PHE 57 GLU 58 ALA 59 TYR 60 LEU 61 GLU 62 ASP 63 LEU 64 ARG 65 ASP 66 ARG 67 GLY 68 GLU 69 GLY 70 VAL 71 ASP 72 TYR 73 LEU 74 SER 75 ILE 76 ALA 77 SER 78 PRO 79 ASN 80 HIS 81 LEU 82 HIS 83 TYR 84 PRO 85 GLN 86 ILE 87 ARG 88 MET 89 ALA 90 LEU 91 ARG 92 LEU 93 GLY 94 ALA 95 ASN 96 ALA 97 LEU 98 SER 99 GLU 100 LYS 101 PRO 102 LEU 103 VAL 104 LEU 105 TRP 106 PRO 107 GLU 108 GLU 109 ILE 110 ALA 111 ARG 112 LEU 113 LYS 114 GLU 115 LEU 116 GLU 117 ALA 118 ARG 119 THR 120 GLY 121 ARG 122 ARG 123 VAL 124 TYR 125 THR 126 VAL 127 LEU 128 GLN 129 LEU 130 ARG 131 VAL 132 HIS 133 PRO 134 SER 135 LEU 136 LEU 137 ALA 138 LEU 139 LYS 140 GLU 141 ARG 142 LEU 143 GLY 144 GLN 145 GLU 146 LYS 147 GLY 148 ALA 149 LYS 150 ASP 151 VAL 152 VAL 153 LEU 154 THR 155 TYR 156 VAL 157 THR 158 GLY 159 ARG 160 GLY 161 LYS 162 TRP 163 TYR 164 GLY 165 LYS 166 SER 167 TRP 168 LYS 169 VAL 170 ASP 171 GLU 172 ALA 173 LYS 174 SER 175 GLY 176 GLY 177 LEU 178 ALA 179 THR 180 ASN 181 ILE 182 GLY 183 ILE 184 HIS 185 PHE 186 PHE 187 ASP 188 LEU 189 LEU 190 ALA 191 TRP 192 LEU 193 PHE 194 GLY 195 ARG 196 ALA 197 LEU 198 HIS 199 VAL 200 GLU 201 VAL 202 HIS 203 ALA 204 ARG 205 THR 206 PRO 207 THR 208 VAL 209 ASN 210 ALA 211 GLY 212 TYR 213 LEU 214 GLU 215 LEU 216 GLU 217 GLY 218 ALA 219 ARG 220 VAL 221 ARG 222 TRP 223 PHE 224 LEU 225 SER 226 ILE 227 ASP 228 PRO 229 SER 230 PHE 231 VAL 232 PRO 233 GLU 234 PRO 235 LEU 236 ARG 237 ARG 238 GLN 239 GLY 240 LYS 241 ARG 242 THR 243 TYR 244 ARG 245 SER 246 ILE 247 ALA 248 VAL 249 ASP 250 GLY 251 GLU 252 GLU 253 VAL 254 GLU 255 PHE 256 SER 257 GLU 258 GLY 259 PHE 260 THR 261 ASP 262 LEU 263 HIS 264 THR 265 GLU 266 VAL 267 TYR 268 ARG 269 LYS 270 THR 271 LEU 272 ALA 273 GLY 274 GLU 275 GLY 276 PHE 277 GLY 278 LEU 279 ASP 280 GLU 281 ALA 282 ALA 283 GLU 284 ALA 285 ILE 286 ARG 287 VAL 288 ALA 289 ALA 290 LEU 291 LEU 292 ARG 293 THR 294 LEU 295 PRO 296 LEU 297 SER 298 GLN 299 PRO 300 SER 301 PRO 302 GLU 303 ASN 304 ARG 305 HIS 306 PRO 307 PHE 308 LEU 309 GLY 310
Unit 4	MET 1 THR 2 ARG 3 PHE 4 ALA 5 LEU 6 THR 7 GLY 8 LEU 9 ALA 10 GLY 11 TYR 12 ILE 13 ALA 14 PRO 15 ARG 16 HIS 17 LEU 18 LYS 19 ALA 20 ILE 21 LYS 22 GLU 23 VAL 24 GLY 25 GLY 26 VAL 27 LEU 28 VAL 29 ALA 30 SER 31 LEU 32 ASP 33 PRO 34 ALA 35 THR 36 ASN 37 VAL 38 GLY 39 LEU 40 VAL 41 ASP 42 SER 43 PHE 44 PHE 45 PRO 46 GLU 47 ALA 48 GLU 49 PHE 50 PHE 51 THR 52 GLU 53 PRO 54 GLU 55 ALA 56 PHE 57 GLU 58 ALA 59 TYR 60 LEU 61 GLU 62 ASP 63 LEU 64 ARG 65 ASP 66 ARG 67 GLY 68 GLU 69 GLY 70 VAL 71 ASP 72 TYR 73 LEU 74 SER 75 ILE 76 ALA 77 SER 78 PRO 79 ASN 80 HIS 81 LEU 82 HIS 83 TYR 84 PRO 85 GLN 86 ILE 87 ARG 88 MET 89 ALA 90 LEU 91 ARG 92 LEU 93 GLY 94 ALA 95 ASN 96 ALA 97 LEU 98 SER 99 GLU 100 LYS 101 PRO 102 LEU 103 VAL 104 LEU 105 TRP 106 PRO 107 GLU 108 GLU 109 ILE 110 ALA 111 ARG 112 LEU 113 LYS 114 GLU 115 LEU 116 GLU 117 ALA 118 ARG 119 THR 120 GLY 121 ARG 122 ARG 123 VAL 124 TYR 125 THR 126 VAL 127 LEU 128 GLN 129 LEU 130 ARG 131 VAL 132 HIS 133 PRO 134 SER 135 LEU 136 LEU 137 ALA 138 LEU 139 LYS 140 GLU 141 ARG 142 LEU 143 GLY 144 GLN 145 GLU 146 LYS 147 GLY 148 ALA 149 LYS 150 ASP 151 VAL 152 VAL 153 LEU 154 THR 155 TYR 156 VAL 157 THR 158 GLY 159 ARG 160 GLY 161 LYS 162 TRP 163 TYR 164 GLY 165 LYS 166 SER 167 TRP 168 LYS 169 VAL 170 ASP 171 GLU 172 ALA 173 LYS 174 SER 175 GLY 176 GLY 177 LEU 178 ALA 179 THR 180 ASN 181 ILE 182 GLY 183 ILE 184 HIS 185 PHE 186 PHE 187 ASP 188 LEU 189 LEU 190 ALA 191 TRP 192 LEU 193 PHE 194 GLY 195 ARG 196 ALA 197 LEU 198 HIS 199 VAL 200 GLU 201 VAL 202 HIS 203 ALA 204 ARG 205 THR 206 PRO 207 THR 208 VAL 209 ASN 210 ALA 211 GLY 212 TYR 213 LEU 214 GLU 215 LEU 216 GLU 217 GLY 218 ALA 219 ARG 220 VAL 221 ARG 222 TRP 223 PHE 224 LEU 225 SER 226 ILE 227 ASP 228 PRO 229 SER 230 PHE 231 VAL 232 PRO 233 GLU 234 PRO 235 LEU 236 ARG 237 ARG 238 GLN 239 GLY 240 LYS 241 ARG 242 THR 243 TYR 244 ARG 245 SER 246 ILE 247 ALA 248 VAL 249 ASP 250 GLY 251 GLU 252 GLU 253 VAL 254 GLU 255 PHE 256 SER 257 GLU 258 GLY 259 PHE 260 THR 261 ASP 262 LEU 263 HIS 264 THR 265 GLU 266 VAL 267 TYR 268 ARG 269 LYS 270 THR 271 LEU 272 ALA 273 GLY 274 GLU 275 GLY 276 PHE 277 GLY 278 LEU 279 ASP 280 GLU 281 ALA 282 ALA 283 GLU 284 ALA 285 ILE 286 ARG 287 VAL 288 ALA 289 ALA 290 LEU 291 LEU 292 ARG 293 THR 294 LEU 295 PRO 296 LEU 297 SER 298 GLN 299 PRO 300 SER 301 PRO 302 GLU 303 ASN 304 ARG 305 HIS 306 PRO 307 PHE 308 LEU 309

Ligands

Unit 5	NAD 311 AKG 312 CL 313
Unit 6	NAD 311 AKG 312 EDO 313 EDO 314 CL 315
Unit 7	NAD 311 AKG 312 EDO 313 CL 314
Unit 8	NAD 311 AKG 312 CL 313