3O52 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE E.COLI GDP-MANNOSE HYDROLASE (YFFH) IN COMP TARTRATE
• Keywords: NUDIX, GDP_MANNOSE, HYDROLASE, BIOFILM, TARTRATE, NUDIX FOLD MANNOSE HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3O52	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	A	175	1414	0
2	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	B	182	1420	45
3	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	C	177	1430	0
4	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	D	180	1455	0
5	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	E	177	1429	0
6	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	A	182	1420	45
7	Ligand	GDP-MANNOSE PYROPHOSPHATASE NUDK	B	2	0	11
8	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	C	182	1420	45
9	Ligand	GDP-MANNOSE PYROPHOSPHATASE NUDK	D	5	0	14
10	Protein	GDP-MANNOSE PYROPHOSPHATASE NUDK	E	182	1420	45
11	Water			197	0	197
total				1641	11408	402

Proteins

Unit 1	GLN 3 GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 HIS 37 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191
Unit 2	GLN 3 GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 138 ASN 139 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191 CL 192 TAR 7110 NA 7111 TAR 7112 NA 7113 NA 7114
Unit 3	GLN 3 GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 HIS 37 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 138 ASN 139 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191
Unit 4	GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 HIS 37 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 138 ASN 139 GLN 140 ARG 141 ALA 142 GLU 151 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191
Unit 5	THR 2 GLN 3 GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 HIS 37 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 138 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191
Unit 6	GLN 3 GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 138 ASN 139 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191 CL 192 TAR 7110 NA 7111 TAR 7112 NA 7113 NA 7114
Unit 8	GLN 3 GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 138 ASN 139 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191 CL 192 TAR 7110 NA 7111 TAR 7112 NA 7113 NA 7114
Unit 10	GLN 3 GLN 4 ILE 5 THR 6 LEU 7 ILE 8 LYS 9 ASP 10 LYS 11 ILE 12 LEU 13 SER 14 ASP 15 ASN 16 TYR 17 PHE 18 THR 19 LEU 20 HIS 21 ASN 22 ILE 23 THR 24 TYR 25 ASP 26 LEU 27 THR 28 ARG 29 LYS 30 ASP 31 GLY 32 GLU 33 VAL 34 ILE 35 ARG 36 LYS 38 ARG 39 GLU 40 VAL 41 TYR 42 ASP 43 ARG 44 GLY 45 ASN 46 GLY 47 ALA 48 THR 49 ILE 50 LEU 51 LEU 52 TYR 53 ASN 54 THR 55 LYS 56 LYS 57 LYS 58 THR 59 VAL 60 VAL 61 LEU 62 ILE 63 ARG 64 GLN 65 PHE 66 ARG 67 VAL 68 ALA 69 THR 70 TRP 71 VAL 72 ASN 73 GLY 74 ASN 75 GLU 76 SER 77 GLY 78 GLN 79 LEU 80 ILE 81 GLU 82 SER 83 CYS 84 ALA 85 GLY 86 LEU 87 LEU 88 ASP 89 ASN 90 ASP 91 GLU 92 PRO 93 GLU 94 VAL 95 CYS 96 ILE 97 ARG 98 LYS 99 GLU 100 ALA 101 ILE 102 GLU 103 GLU 104 THR 105 GLY 106 TYR 107 GLU 108 VAL 109 GLY 110 GLU 111 VAL 112 ARG 113 LYS 114 LEU 115 PHE 116 GLU 117 LEU 118 TYR 119 MET 120 SER 121 PRO 122 GLY 123 GLY 124 VAL 125 THR 126 GLU 127 LEU 128 ILE 129 HIS 130 PHE 131 PHE 132 ILE 133 ALA 134 GLU 135 TYR 136 SER 137 ASP 138 ASN 139 ASP 152 ILE 153 GLU 154 VAL 155 LEU 156 GLU 157 LEU 158 PRO 159 PHE 160 SER 161 GLN 162 ALA 163 LEU 164 GLU 165 MET 166 ILE 167 LYS 168 THR 169 GLY 170 GLU 171 ILE 172 ARG 173 ASP 174 GLY 175 LYS 176 THR 177 VAL 178 LEU 179 LEU 180 LEU 181 ASN 182 TYR 183 LEU 184 GLN 185 THR 186 SER 187 HIS 188 LEU 189 MET 190 ASP 191 CL 192 TAR 7110 NA 7111 TAR 7112 NA 7113 NA 7114

Ligands

Unit 7	TAR 7110 NA 7111
Unit 9	TAR 7110 NA 7111 NA 7112 CL 7113 CL 7114