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Sequence, Chains, Asymmetric and Biological Units

Title T. MARITIMA RNASE H2 D107N IN COMPLEX WITH NUCLEIC ACID SUBS MAGNESIUM IONS
Keywords RNASE H, NUCLEASE, HYDROLASE-DNA-RNA HYBRID COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBONUCLEASE HII  A 222 1720 0
2  Other macromolecule    C 12 246 0
3  RNA    D 12 241 0
4  Ligand   RIBONUCLEASE HII  A 1 0 1
5  Ligand   DNA/RNA (5'-D(*GP*AP*CP*AP*C)-R(P*C)-D(P*TP*GP*AP 3')  D 1 0 1
6 Water     146 0 146
total       394 2207 148

Proteins
Unit 1 GLY2 ILE3 ASP4 GLU5 LEU6 TYR7 LYS8 LYS9 GLU10 PHE11 GLY12 ILE13 VAL14 ALA15 GLY16 VAL17 ASP18 GLU19 ALA20 GLY21 ARG22 GLY23 CYS24 LEU25 ALA26 GLY27 PRO28 VAL29 VAL30 ALA31 ALA32 ALA33 VAL34 VAL35 LEU36 GLU37 LYS38 GLU39 ILE40 GLU41 GLY42 ILE43 ASN44 ASP45 SER46 LYS47 GLN48 LEU49 SER50 PRO51 ALA52 LYS53 ARG54 GLU55 ARG56 LEU57 LEU58 ASP59 GLU60 ILE61 MET62 GLU63 LYS64 ALA65 ALA66 VAL67 GLY68 ILE69 GLY70 ILE71 ALA72 SER73 PRO74 GLU75 GLU76 ILE77 ASP78 LEU79 TYR80 ASN81 ILE82 PHE83 ASN84 ALA85 THR86 LYS87 LEU88 ALA89 MET90 ASN91 ARG92 ALA93 LEU94 GLU95 ASN96 LEU97 SER98 VAL99 LYS100 PRO101 SER102 PHE103 VAL104 LEU105 VAL106 ASN107 GLY108 LYS109 GLY110 ILE111 GLU112 LEU113 SER114 VAL115 PRO116 GLY117 THR118 CYS119 LEU120 VAL121 LYS122 GLY123 ASP124 GLN125 LYS126 SER127 LYS128 LEU129 ILE130 GLY131 ALA132 ALA133 SER134 ILE135 VAL136 ALA137 LYS138 VAL139 PHE140 ARG141 ASP142 ARG143 LEU144 MET145 SER146 GLU147 PHE148 HIS149 ARG150 MET151 TYR152 PRO153 GLN154 PHE155 SER156 PHE157 HIS158 LYS159 HIS160 LYS161 GLY162 TYR163 ALA164 THR165 LYS166 GLU167 HIS168 LEU169 ASN170 GLU171 ILE172 ARG173 LYS174 ASN175 GLY176 VAL177 LEU178 PRO179 ILE180 HIS181 ARG182 LEU183 SER184 PHE185 GLU186 PRO187 VAL188 LEU189 GLU190 LEU191 LEU192 THR193 ASP194 ASP195 LEU196 LEU197 ARG198 GLU199 PHE200 PHE201 GLU202 LYS203 GLY204 LEU205 ILE206 SER207 GLU208 ASN209 ARG210 PHE211 GLU212 ARG213 ILE214 LEU215 ASN216 LEU217 LEU218 GLY219 ALA220 ARG221 LYS222 SER223

Nucleic acids
Unit 3 DG1 DA2 DC3 DA4 DC5 C6 DT7 DG8 DA9 DT10 DT11 DC12

Other macromolecules
Unit 2 DG1 DA2 DA3 DT4 DC5 DA6 DG7 DG8 DT9 DG10 DT11 DC12

Ligands
Unit 4 MG224
Unit 5 MG13

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany