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Title | STRUCTURE OF THE S-ADENOSYLHOMOCYSTEINE RIBOSWITCH AT 2.18 A | |
Keywords | RNA, RIBOSWITCH, S-ADENOSYL-HOMOCYSTEINE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3NPQ | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 51 | 1101 | 0 | |
2 | RNA | B | 49 | 1056 | 0 | |
3 | RNA | C | 50 | 1078 | 0 | |
4 | Ligand | S-ADENOSYLHOMOCYSTEINE RIBOSWITCH | A | 6 | 0 | 61 |
5 | Ligand | S-ADENOSYLHOMOCYSTEINE RIBOSWITCH | B | 6 | 0 | 61 |
6 | Ligand | S-ADENOSYLHOMOCYSTEINE RIBOSWITCH | C | 6 | 0 | 61 |
7 | Water | 575 | 0 | 575 | ||
total | 743 | 3235 | 758 |
Unit 1 | G1 G2 A3 C4 G5 A6 G7 G8 A9 G10 C11 G12 C13 U14 G15 C16 A17 A18 G19 C20 G21 A22 G23 A24 G25 C26 C27 C28 A29 G30 G31 C32 U33 C34 G35 U36 C37 C38 G39 A43 A44 A45 C46 G47 G48 C49 G50 C51 U52 C53 A54 |
Unit 2 | G1 G2 A3 C4 G5 A6 G7 G8 A9 G10 C11 G12 C13 U14 G15 C16 A17 A18 G19 C20 G21 A22 G23 A24 G25 C26 C27 C28 A29 G30 G31 C32 U33 C34 G35 U36 C37 C38 A44 A45 C46 G47 G48 C49 G50 C51 U52 C53 A54 |
Unit 3 | G1 G2 A3 C4 G5 A6 G7 G8 A9 G10 C11 G12 C13 U14 G15 C16 A17 A18 G19 C20 G21 A22 G23 A24 G25 C26 C27 C28 A29 G30 G31 C32 U33 C34 G35 U36 C37 C38 A43 A44 A45 C46 G47 G48 C49 G50 C51 U52 C53 A54 |
Unit 4 | SAH55 NCO56 NCO57 NCO58 NCO59 NCO60 |
Unit 5 | SAH55 NCO56 NCO57 NCO58 NCO59 NCO60 |
Unit 6 | SAH55 NCO56 NCO57 NCO58 NCO59 NCO60 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |