3NMU - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF SUBSTRATE-BOUND HALFMER BOX C/D RNP
• Keywords: KINK-TURN MOTIF, RNA ASSEMBLY MOTIF, TRANSFERASE-RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3NMU	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NOP5/NOP56 RELATED PROTEIN	A	366	2981	0
2	Protein	NOP5/NOP56 RELATED PROTEIN	B	366	2981	0
3	Protein	50S RIBOSOMAL PROTEIN L7AE	C	121	926	0
4	RNA		D	34	732	0
5	RNA		E	34	732	0
6	Protein		F	227	1822	0
7	Protein	50S RIBOSOMAL PROTEIN L7AE	G	121	926	0
8	Protein		J	227	1822	0
9	RNA		I	13	275	0
10	RNA		K	12	255	0
11	Ligand		F	1	0	26
12	Ligand		J	1	0	26
13	Water			27	0	27
total				1550	13452	79

Proteins

Unit 1	PHE 8 ILE 9 SER 10 GLU 11 ASN 12 VAL 13 ARG 14 GLY 15 ILE 16 TYR 17 ALA 18 PHE 19 ASP 20 GLU 21 ASN 22 GLY 23 ASN 24 LEU 25 ILE 26 GLU 27 LYS 28 ARG 29 TYR 30 PHE 31 THR 32 ASP 33 LYS 34 PRO 35 GLU 36 LYS 37 VAL 38 LEU 39 ASP 40 GLN 41 LEU 42 LEU 43 LYS 44 GLY 45 GLU 46 ILE 47 THR 48 LYS 49 ASP 50 LEU 51 GLU 52 GLU 53 LEU 54 LEU 55 ASN 56 SER 57 LEU 58 LYS 59 GLU 60 LYS 61 GLY 62 TYR 63 ASP 64 GLU 65 PHE 66 VAL 67 PHE 68 GLU 69 HIS 70 PRO 71 GLU 72 LEU 73 SER 74 ARG 75 ARG 76 ALA 77 LYS 78 GLU 79 LEU 80 GLY 81 PHE 82 SER 83 ALA 84 THR 85 THR 86 GLU 87 PHE 88 PRO 89 ASN 90 ILE 91 ALA 92 GLY 93 GLU 94 ARG 95 LEU 96 ARG 97 SER 98 ASN 99 PRO 100 GLU 101 GLU 102 PHE 103 LEU 104 GLY 105 GLU 106 ASN 107 TRP 108 PHE 109 GLU 110 GLU 111 TYR 112 TYR 113 LYS 114 VAL 115 GLY 116 VAL 117 ALA 118 LEU 119 THR 120 ARG 121 MET 122 ARG 123 ILE 124 GLN 125 GLU 126 GLN 127 SER 128 GLY 129 ALA 130 ARG 131 ASP 132 LYS 133 MET 134 VAL 135 ILE 136 GLN 137 ALA 138 ILE 139 GLU 140 ALA 141 LEU 142 ASP 143 ASP 144 VAL 145 ASP 146 LYS 147 VAL 148 ILE 149 ASN 150 LEU 151 LEU 152 VAL 153 ALA 154 ARG 155 LEU 156 ARG 157 GLU 158 TRP 159 TYR 160 SER 161 LEU 162 HIS 163 PHE 164 PRO 165 GLU 166 LEU 167 ASP 168 GLU 169 LEU 170 LEU 171 PRO 172 LYS 173 HIS 174 PRO 175 GLN 176 TYR 177 VAL 178 ALA 179 PHE 180 VAL 181 LYS 182 THR 183 VAL 184 GLY 185 HIS 186 ARG 187 ASP 188 ASN 189 ILE 190 ASN 191 GLU 192 GLU 193 VAL 194 LEU 195 ARG 196 GLU 197 LEU 198 GLY 199 LEU 200 SER 201 GLU 202 GLU 203 LYS 204 ILE 205 LYS 206 LYS 207 ILE 208 LEU 209 GLU 210 ALA 211 LYS 212 GLU 213 LYS 214 THR 215 MET 216 GLY 217 ALA 218 TRP 219 MET 220 ASP 221 GLN 222 THR 223 ASP 224 ILE 225 GLU 226 VAL 227 VAL 228 ARG 229 GLN 230 LEU 231 ALA 232 GLU 233 GLU 234 ILE 235 ASP 236 ARG 237 LEU 238 TYR 239 GLN 240 LEU 241 ARG 242 LYS 243 LYS 244 LEU 245 GLU 246 ASP 247 TYR 248 ILE 249 ASP 250 ARG 251 ALA 252 MET 253 ASP 254 ASP 255 VAL 256 ALA 257 PRO 258 ASN 259 LEU 260 LYS 261 ALA 262 LEU 263 VAL 264 GLY 265 ALA 266 LYS 267 LEU 268 ALA 269 ALA 270 ARG 271 LEU 272 ILE 273 SER 274 LEU 275 ALA 276 GLY 277 GLY 278 LEU 279 ARG 280 GLU 281 LEU 282 ALA 283 MET 284 MET 285 PRO 286 SER 287 SER 288 THR 289 ILE 290 GLN 291 VAL 292 LEU 293 GLY 294 ALA 295 GLU 296 LYS 297 ALA 298 LEU 299 PHE 300 ARG 301 HIS 302 LEU 303 ARG 304 THR 305 GLY 306 ALA 307 LYS 308 PRO 309 PRO 310 LYS 311 HIS 312 GLY 313 VAL 314 ILE 315 TYR 316 GLN 317 TYR 318 PRO 319 ALA 320 ILE 321 ASN 322 ARG 323 SER 324 PRO 325 TRP 326 TRP 327 GLN 328 ARG 329 GLY 330 LYS 331 ILE 332 ALA 333 ARG 334 ALA 335 LEU 336 ALA 337 GLY 338 LYS 339 LEU 340 ALA 341 ILE 342 ALA 343 ALA 344 ARG 345 VAL 346 ASP 347 TYR 348 PHE 349 SER 350 GLY 351 GLU 352 TYR 353 ILE 354 ALA 355 GLU 356 GLU 357 LEU 358 LYS 359 LYS 360 GLU 361 LEU 362 GLU 363 ALA 364 ARG 365 ILE 366 ARG 367 GLU 368 ILE 369 LYS 370 GLU 371 LYS 372 TYR 373
Unit 2	PHE 8 ILE 9 SER 10 GLU 11 ASN 12 VAL 13 ARG 14 GLY 15 ILE 16 TYR 17 ALA 18 PHE 19 ASP 20 GLU 21 ASN 22 GLY 23 ASN 24 LEU 25 ILE 26 GLU 27 LYS 28 ARG 29 TYR 30 PHE 31 THR 32 ASP 33 LYS 34 PRO 35 GLU 36 LYS 37 VAL 38 LEU 39 ASP 40 GLN 41 LEU 42 LEU 43 LYS 44 GLY 45 GLU 46 ILE 47 THR 48 LYS 49 ASP 50 LEU 51 GLU 52 GLU 53 LEU 54 LEU 55 ASN 56 SER 57 LEU 58 LYS 59 GLU 60 LYS 61 GLY 62 TYR 63 ASP 64 GLU 65 PHE 66 VAL 67 PHE 68 GLU 69 HIS 70 PRO 71 GLU 72 LEU 73 SER 74 ARG 75 ARG 76 ALA 77 LYS 78 GLU 79 LEU 80 GLY 81 PHE 82 SER 83 ALA 84 THR 85 THR 86 GLU 87 PHE 88 PRO 89 ASN 90 ILE 91 ALA 92 GLY 93 GLU 94 ARG 95 LEU 96 ARG 97 SER 98 ASN 99 PRO 100 GLU 101 GLU 102 PHE 103 LEU 104 GLY 105 GLU 106 ASN 107 TRP 108 PHE 109 GLU 110 GLU 111 TYR 112 TYR 113 LYS 114 VAL 115 GLY 116 VAL 117 ALA 118 LEU 119 THR 120 ARG 121 MET 122 ARG 123 ILE 124 GLN 125 GLU 126 GLN 127 SER 128 GLY 129 ALA 130 ARG 131 ASP 132 LYS 133 MET 134 VAL 135 ILE 136 GLN 137 ALA 138 ILE 139 GLU 140 ALA 141 LEU 142 ASP 143 ASP 144 VAL 145 ASP 146 LYS 147 VAL 148 ILE 149 ASN 150 LEU 151 LEU 152 VAL 153 ALA 154 ARG 155 LEU 156 ARG 157 GLU 158 TRP 159 TYR 160 SER 161 LEU 162 HIS 163 PHE 164 PRO 165 GLU 166 LEU 167 ASP 168 GLU 169 LEU 170 LEU 171 PRO 172 LYS 173 HIS 174 PRO 175 GLN 176 TYR 177 VAL 178 ALA 179 PHE 180 VAL 181 LYS 182 THR 183 VAL 184 GLY 185 HIS 186 ARG 187 ASP 188 ASN 189 ILE 190 ASN 191 GLU 192 GLU 193 VAL 194 LEU 195 ARG 196 GLU 197 LEU 198 GLY 199 LEU 200 SER 201 GLU 202 GLU 203 LYS 204 ILE 205 LYS 206 LYS 207 ILE 208 LEU 209 GLU 210 ALA 211 LYS 212 GLU 213 LYS 214 THR 215 MET 216 GLY 217 ALA 218 TRP 219 MET 220 ASP 221 GLN 222 THR 223 ASP 224 ILE 225 GLU 226 VAL 227 VAL 228 ARG 229 GLN 230 LEU 231 ALA 232 GLU 233 GLU 234 ILE 235 ASP 236 ARG 237 LEU 238 TYR 239 GLN 240 LEU 241 ARG 242 LYS 243 LYS 244 LEU 245 GLU 246 ASP 247 TYR 248 ILE 249 ASP 250 ARG 251 ALA 252 MET 253 ASP 254 ASP 255 VAL 256 ALA 257 PRO 258 ASN 259 LEU 260 LYS 261 ALA 262 LEU 263 VAL 264 GLY 265 ALA 266 LYS 267 LEU 268 ALA 269 ALA 270 ARG 271 LEU 272 ILE 273 SER 274 LEU 275 ALA 276 GLY 277 GLY 278 LEU 279 ARG 280 GLU 281 LEU 282 ALA 283 MET 284 MET 285 PRO 286 SER 287 SER 288 THR 289 ILE 290 GLN 291 VAL 292 LEU 293 GLY 294 ALA 295 GLU 296 LYS 297 ALA 298 LEU 299 PHE 300 ARG 301 HIS 302 LEU 303 ARG 304 THR 305 GLY 306 ALA 307 LYS 308 PRO 309 PRO 310 LYS 311 HIS 312 GLY 313 VAL 314 ILE 315 TYR 316 GLN 317 TYR 318 PRO 319 ALA 320 ILE 321 ASN 322 ARG 323 SER 324 PRO 325 TRP 326 TRP 327 GLN 328 ARG 329 GLY 330 LYS 331 ILE 332 ALA 333 ARG 334 ALA 335 LEU 336 ALA 337 GLY 338 LYS 339 LEU 340 ALA 341 ILE 342 ALA 343 ALA 344 ARG 345 VAL 346 ASP 347 TYR 348 PHE 349 SER 350 GLY 351 GLU 352 TYR 353 ILE 354 ALA 355 GLU 356 GLU 357 LEU 358 LYS 359 LYS 360 GLU 361 LEU 362 GLU 363 ALA 364 ARG 365 ILE 366 ARG 367 GLU 368 ILE 369 LYS 370 GLU 371 LYS 372 TYR 373
Unit 3	LYS 4 PRO 5 SER 6 TYR 7 VAL 8 LYS 9 PHE 10 GLU 11 VAL 12 PRO 13 LYS 14 GLU 15 LEU 16 ALA 17 GLU 18 LYS 19 ALA 20 LEU 21 GLN 22 ALA 23 VAL 24 GLU 25 ILE 26 ALA 27 ARG 28 ASP 29 THR 30 GLY 31 LYS 32 ILE 33 ARG 34 LYS 35 GLY 36 THR 37 ASN 38 GLU 39 THR 40 THR 41 LYS 42 ALA 43 VAL 44 GLU 45 ARG 46 GLY 47 GLN 48 ALA 49 LYS 50 LEU 51 VAL 52 ILE 53 ILE 54 ALA 55 GLU 56 ASP 57 VAL 58 ASP 59 PRO 60 GLU 61 GLU 62 ILE 63 VAL 64 ALA 65 HIS 66 LEU 67 PRO 68 PRO 69 LEU 70 CYS 71 GLU 72 GLU 73 LYS 74 GLU 75 ILE 76 PRO 77 TYR 78 ILE 79 TYR 80 VAL 81 PRO 82 SER 83 LYS 84 LYS 85 GLU 86 LEU 87 GLY 88 ALA 89 ALA 90 ALA 91 GLY 92 ILE 93 GLU 94 VAL 95 ALA 96 ALA 97 ALA 98 SER 99 VAL 100 ALA 101 ILE 102 ILE 103 GLU 104 PRO 105 GLY 106 LYS 107 ALA 108 ARG 109 ASP 110 LEU 111 VAL 112 GLU 113 GLU 114 ILE 115 ALA 116 MET 117 LYS 118 VAL 119 LYS 120 GLU 121 LEU 122 MET 123 LYS 124
Unit 6	MET 1 VAL 2 GLU 3 VAL 4 LYS 5 LYS 6 HIS 7 LYS 8 PHE 9 PRO 10 GLY 11 VAL 12 TYR 13 VAL 14 VAL 15 ILE 16 ASP 17 ASP 18 ASP 19 GLY 20 SER 21 GLU 22 LYS 23 ILE 24 ALA 25 THR 26 LYS 27 ASN 28 LEU 29 VAL 30 PRO 31 GLY 32 GLN 33 ARG 34 VAL 35 TYR 36 GLY 37 GLU 38 ARG 39 VAL 40 ILE 41 LYS 42 TRP 43 GLU 44 GLY 45 GLU 46 GLU 47 TYR 48 ARG 49 ILE 50 TRP 51 ASN 52 PRO 53 HIS 54 ARG 55 SER 56 LYS 57 LEU 58 GLY 59 ALA 60 ALA 61 ILE 62 VAL 63 ASN 64 GLY 65 LEU 66 LYS 67 ASN 68 PHE 69 PRO 70 ILE 71 LYS 72 PRO 73 GLY 74 LYS 75 SER 76 VAL 77 LEU 78 TYR 79 LEU 80 GLY 81 ILE 82 ALA 83 SER 84 GLY 85 THR 86 THR 87 ALA 88 SER 89 HIS 90 VAL 91 SER 92 ASP 93 ILE 94 VAL 95 GLY 96 TRP 97 GLU 98 GLY 99 LYS 100 ILE 101 TYR 102 GLY 103 ILE 104 GLU 105 PHE 106 SER 107 PRO 108 ARG 109 VAL 110 LEU 111 ARG 112 GLU 113 LEU 114 VAL 115 PRO 116 ILE 117 VAL 118 GLU 119 GLU 120 ARG 121 ARG 122 ASN 123 ILE 124 ILE 125 PRO 126 ILE 127 LEU 128 GLY 129 ASP 130 ALA 131 THR 132 LYS 133 PRO 134 GLU 135 GLU 136 TYR 137 ARG 138 ALA 139 LEU 140 VAL 141 THR 142 LYS 143 VAL 144 ASP 145 VAL 146 ILE 147 PHE 148 GLU 149 ASP 150 VAL 151 ALA 152 GLN 153 PRO 154 THR 155 GLN 156 ALA 157 LYS 158 ILE 159 LEU 160 ILE 161 ASP 162 ASN 163 ALA 164 LYS 165 ALA 166 TYR 167 LEU 168 LYS 169 ARG 170 GLY 171 GLY 172 TYR 173 GLY 174 MET 175 ILE 176 ALA 177 VAL 178 LYS 179 SER 180 ARG 181 SER 182 ILE 183 ASP 184 VAL 185 THR 186 LYS 187 GLU 188 PRO 189 GLU 190 GLN 191 VAL 192 PHE 193 LYS 194 GLU 195 VAL 196 GLU 197 ARG 198 GLU 199 LEU 200 SER 201 GLU 202 TYR 203 PHE 204 GLU 205 VAL 206 ILE 207 GLU 208 ARG 209 LEU 210 ASN 211 LEU 212 GLU 213 PRO 214 TYR 215 GLU 216 LYS 217 ASP 218 HIS 219 ALA 220 LEU 221 PHE 222 VAL 223 VAL 224 ARG 225 LYS 226 PRO 227
Unit 7	LYS 4 PRO 5 SER 6 TYR 7 VAL 8 LYS 9 PHE 10 GLU 11 VAL 12 PRO 13 LYS 14 GLU 15 LEU 16 ALA 17 GLU 18 LYS 19 ALA 20 LEU 21 GLN 22 ALA 23 VAL 24 GLU 25 ILE 26 ALA 27 ARG 28 ASP 29 THR 30 GLY 31 LYS 32 ILE 33 ARG 34 LYS 35 GLY 36 THR 37 ASN 38 GLU 39 THR 40 THR 41 LYS 42 ALA 43 VAL 44 GLU 45 ARG 46 GLY 47 GLN 48 ALA 49 LYS 50 LEU 51 VAL 52 ILE 53 ILE 54 ALA 55 GLU 56 ASP 57 VAL 58 ASP 59 PRO 60 GLU 61 GLU 62 ILE 63 VAL 64 ALA 65 HIS 66 LEU 67 PRO 68 PRO 69 LEU 70 CYS 71 GLU 72 GLU 73 LYS 74 GLU 75 ILE 76 PRO 77 TYR 78 ILE 79 TYR 80 VAL 81 PRO 82 SER 83 LYS 84 LYS 85 GLU 86 LEU 87 GLY 88 ALA 89 ALA 90 ALA 91 GLY 92 ILE 93 GLU 94 VAL 95 ALA 96 ALA 97 ALA 98 SER 99 VAL 100 ALA 101 ILE 102 ILE 103 GLU 104 PRO 105 GLY 106 LYS 107 ALA 108 ARG 109 ASP 110 LEU 111 VAL 112 GLU 113 GLU 114 ILE 115 ALA 116 MET 117 LYS 118 VAL 119 LYS 120 GLU 121 LEU 122 MET 123 LYS 124
Unit 8	MET 1 VAL 2 GLU 3 VAL 4 LYS 5 LYS 6 HIS 7 LYS 8 PHE 9 PRO 10 GLY 11 VAL 12 TYR 13 VAL 14 VAL 15 ILE 16 ASP 17 ASP 18 ASP 19 GLY 20 SER 21 GLU 22 LYS 23 ILE 24 ALA 25 THR 26 LYS 27 ASN 28 LEU 29 VAL 30 PRO 31 GLY 32 GLN 33 ARG 34 VAL 35 TYR 36 GLY 37 GLU 38 ARG 39 VAL 40 ILE 41 LYS 42 TRP 43 GLU 44 GLY 45 GLU 46 GLU 47 TYR 48 ARG 49 ILE 50 TRP 51 ASN 52 PRO 53 HIS 54 ARG 55 SER 56 LYS 57 LEU 58 GLY 59 ALA 60 ALA 61 ILE 62 VAL 63 ASN 64 GLY 65 LEU 66 LYS 67 ASN 68 PHE 69 PRO 70 ILE 71 LYS 72 PRO 73 GLY 74 LYS 75 SER 76 VAL 77 LEU 78 TYR 79 LEU 80 GLY 81 ILE 82 ALA 83 SER 84 GLY 85 THR 86 THR 87 ALA 88 SER 89 HIS 90 VAL 91 SER 92 ASP 93 ILE 94 VAL 95 GLY 96 TRP 97 GLU 98 GLY 99 LYS 100 ILE 101 TYR 102 GLY 103 ILE 104 GLU 105 PHE 106 SER 107 PRO 108 ARG 109 VAL 110 LEU 111 ARG 112 GLU 113 LEU 114 VAL 115 PRO 116 ILE 117 VAL 118 GLU 119 GLU 120 ARG 121 ARG 122 ASN 123 ILE 124 ILE 125 PRO 126 ILE 127 LEU 128 GLY 129 ASP 130 ALA 131 THR 132 LYS 133 PRO 134 GLU 135 GLU 136 TYR 137 ARG 138 ALA 139 LEU 140 VAL 141 THR 142 LYS 143 VAL 144 ASP 145 VAL 146 ILE 147 PHE 148 GLU 149 ASP 150 VAL 151 ALA 152 GLN 153 PRO 154 THR 155 GLN 156 ALA 157 LYS 158 ILE 159 LEU 160 ILE 161 ASP 162 ASN 163 ALA 164 LYS 165 ALA 166 TYR 167 LEU 168 LYS 169 ARG 170 GLY 171 GLY 172 TYR 173 GLY 174 MET 175 ILE 176 ALA 177 VAL 178 LYS 179 SER 180 ARG 181 SER 182 ILE 183 ASP 184 VAL 185 THR 186 LYS 187 GLU 188 PRO 189 GLU 190 GLN 191 VAL 192 PHE 193 LYS 194 GLU 195 VAL 196 GLU 197 ARG 198 GLU 199 LEU 200 SER 201 GLU 202 TYR 203 PHE 204 GLU 205 VAL 206 ILE 207 GLU 208 ARG 209 LEU 210 ASN 211 LEU 212 GLU 213 PRO 214 TYR 215 GLU 216 LYS 217 ASP 218 HIS 219 ALA 220 LEU 221 PHE 222 VAL 223 VAL 224 ARG 225 LYS 226 PRO 227

Nucleic acids

Unit 4	G 1 C 2 C 3 G 4 U 5 U 6 G 7 A 8 A 9 G 10 C 11 U 12 C 13 U 14 G 15 A 16 C 17 C 18 G 19 A 20 A 21 A 22 G 23 G 24 C 25 G 26 U 27 G 28 A 29 U 30 G 31 A 32 G 33 C 34
Unit 5	G 1 C 2 C 3 G 4 U 5 U 6 G 7 A 8 A 9 G 10 C 11 U 12 C 13 U 14 G 15 A 16 C 17 C 18 G 19 A 20 A 21 A 22 G 23 G 24 C 25 G 26 U 27 G 28 A 29 U 30 G 31 A 32 G 33 C 34
Unit 9	G 1 A 2 G 3 C 4 U 5 U 6 C 7 A 8 A 9 C 10 G 11 G 12 C 13
Unit 10	A 2 G 3 C 4 U 5 U 6 C 7 A 8 A 9 C 10 G 11 G 12 C 13

Ligands

Unit 11	SAM 228
Unit 12	SAM 228