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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN
Keywords LYSOPHOSPHOLIPASE D, AUTOTAXIN, ENPP2, LYSOPHOSPHATIDIC ACID HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3NKM     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE MEMBER 2  A 805 6447 0
2  Ligand    B 2 0 28
3  Ligand    C 6 0 72
4  Ligand    D 2 0 28
5  Ligand   ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE MEMBER 2  A 26 0 90
6 Water     712 0 712
total       1553 6447 930

Proteins
Unit 1 TRP51 THR52 ASN53 THR54 SER55 GLY56 SER57 CYS58 LYS59 GLY60 ARG61 CYS62 PHE63 GLU64 LEU65 GLN66 GLU67 VAL68 GLY69 PRO70 PRO71 ASP72 CYS73 ARG74 CYS75 ASP76 ASN77 LEU78 CYS79 LYS80 SER81 TYR82 SER83 SER84 CYS85 CYS86 HIS87 ASP88 PHE89 ASP90 GLU91 LEU92 CYS93 LEU94 LYS95 THR96 ALA97 ARG98 GLY99 TRP100 GLU101 CYS102 THR103 LYS104 ASP105 ARG106 CYS107 GLY108 GLU109 VAL110 ARG111 ASN112 GLU113 GLU114 ASN115 ALA116 CYS117 HIS118 CYS119 SER120 GLU121 ASP122 CYS123 LEU124 SER125 ARG126 GLY127 ASP128 CYS129 CYS130 THR131 ASN132 TYR133 GLN134 VAL135 VAL136 CYS137 LYS138 GLY139 GLU140 SER141 HIS142 TRP143 VAL144 ASP145 ASP146 ASP147 CYS148 GLU149 GLU150 ILE151 ARG152 VAL153 PRO154 GLU155 CYS156 PRO157 ALA158 GLY159 PHE160 VAL161 ARG162 PRO163 PRO164 LEU165 ILE166 ILE167 PHE168 SER169 VAL170 ASP171 GLY172 PHE173 ARG174 ALA175 SER176 TYR177 MET178 LYS179 LYS180 GLY181 SER182 LYS183 VAL184 MET185 PRO186 ASN187 ILE188 GLU189 LYS190 LEU191 ARG192 SER193 CYS194 GLY195 THR196 HIS197 ALA198 PRO199 TYR200 MET201 ARG202 PRO203 VAL204 TYR205 PRO206 THR207 LYS208 THR209 PHE210 PRO211 ASN212 LEU213 TYR214 THR215 LEU216 ALA217 THR218 GLY219 LEU220 TYR221 PRO222 GLU223 SER224 HIS225 GLY226 ILE227 VAL228 GLY229 ASN230 SER231 MET232 TYR233 ASP234 PRO235 VAL236 PHE237 ASP238 ALA239 THR240 PHE241 HIS242 LEU243 ARG244 GLY245 ARG246 GLU247 LYS248 PHE249 ASN250 HIS251 ARG252 TRP253 TRP254 GLY255 GLY256 GLN257 PRO258 LEU259 TRP260 ILE261 THR262 ALA263 THR264 LYS265 GLN266 GLY267 VAL268 ARG269 ALA270 GLY271 THR272 PHE273 PHE274 TRP275 SER276 VAL277 SER278 ILE279 PRO280 HIS281 GLU282 ARG283 ARG284 ILE285 LEU286 THR287 ILE288 LEU289 GLN290 TRP291 LEU292 SER293 LEU294 PRO295 ASP296 ASN297 GLU298 ARG299 PRO300 SER301 VAL302 TYR303 ALA304 PHE305 TYR306 SER307 GLU308 GLN309 PRO310 ASP311 PHE312 SER313 GLY314 HIS315 LYS316 TYR317 GLY318 PRO319 PHE320 GLY321 PRO322 GLU323 MET324 THR325 ASN326 PRO327 LEU328 ARG329 GLU330 ILE331 ASP332 LYS333 THR334 VAL335 GLY336 GLN337 LEU338 MET339 ASP340 GLY341 LEU342 LYS343 GLN344 LEU345 LYS346 LEU347 HIS348 ARG349 CYS350 VAL351 ASN352 VAL353 ILE354 PHE355 VAL356 GLY357 ASP358 HIS359 GLY360 MET361 GLU362 ASP363 VAL364 THR365 CYS366 ASP367 ARG368 THR369 GLU370 PHE371 LEU372 SER373 ASN374 TYR375 LEU376 THR377 ASN378 VAL379 ASP380 ASP381 ILE382 THR383 LEU384 VAL385 PRO386 GLY387 THR388 LEU389 GLY390 ARG391 ILE392 ARG393 PRO394 LYS395 ILE396 PRO397 ASN398 ASN399 LEU400 LYS401 TYR402 ASP403 PRO404 LYS405 ALA406 ILE407 ILE408 ALA409 ASN410 LEU411 THR412 CYS413 LYS414 LYS415 PRO416 ASP417 GLN418 HIS419 PHE420 LYS421 PRO422 TYR423 MET424 LYS425 GLN426 HIS427 LEU428 PRO429 LYS430 ARG431 LEU432 HIS433 TYR434 ALA435 ASN436 ASN437 ARG438 ARG439 ILE440 GLU441 ASP442 LEU443 HIS444 LEU445 LEU446 VAL447 GLU448 ARG449 ARG450 TRP451 HIS452 VAL453 ALA454 ARG455 LYS456 PRO457 LEU458 ASP459 VAL460 TYR461 LYS462 LYS463 PRO464 SER465 GLY466 LYS467 CYS468 PHE469 PHE470 GLN471 GLY472 ASP473 HIS474 GLY475 PHE476 ASP477 ASN478 LYS479 VAL480 ASN481 SER482 MET483 GLN484 THR485 VAL486 PHE487 VAL488 GLY489 TYR490 GLY491 PRO492 THR493 PHE494 LYS495 TYR496 ARG497 THR498 LYS499 VAL500 PRO501 PRO502 PHE503 GLU504 ASN505 ILE506 GLU507 LEU508 TYR509 ASN510 VAL511 MET512 CYS513 ASP514 LEU515 LEU516 GLY517 LEU518 LYS519 PRO520 ALA521 PRO522 ASN523 ASN524 GLY525 THR526 HIS527 GLY528 SER529 LEU530 ASN531 HIS532 LEU533 LEU534 ARG535 THR536 ASN537 THR538 PHE539 ARG540 PRO541 THR542 LEU543 PRO544 GLU545 GLU546 VAL547 SER548 ARG549 PRO550 ASN551 TYR552 PRO553 GLY554 ILE555 MET556 TYR557 LEU558 GLN559 SER560 ASP561 PHE562 ASP563 LEU564 GLY565 CYS566 THR567 CYS568 ASP569 ASP570 LYS571 ASN572 LYS573 LEU574 GLU575 GLU576 LEU577 ASN578 LYS579 ARG580 LEU581 HIS582 THR583 LYS584 GLY585 SER586 THR587 GLU588 GLU589 ARG590 HIS591 LEU592 LEU593 TYR594 GLY595 ARG596 PRO597 ALA598 VAL599 LEU600 TYR601 ARG602 THR603 SER604 TYR605 ASP606 ILE607 LEU608 TYR609 HIS610 THR611 ASP612 PHE613 GLU614 SER615 GLY616 TYR617 SER618 GLU619 ILE620 PHE621 LEU622 MET623 PRO624 LEU625 TRP626 THR627 SER628 TYR629 THR630 ILE631 SER632 LYS633 GLN634 ALA635 GLU636 VAL637 SER638 SER639 ILE640 PRO641 GLU642 HIS643 LEU644 THR645 ASN646 CYS647 VAL648 ARG649 PRO650 ASP651 VAL652 ARG653 VAL654 SER655 PRO656 GLY657 PHE658 SER659 GLN660 ASN661 CYS662 LEU663 ALA664 TYR665 LYS666 ASN667 ASP668 LYS669 GLN670 MET671 SER672 TYR673 GLY674 PHE675 LEU676 PHE677 PRO678 PRO679 TYR680 LEU681 SER682 SER683 SER684 PRO685 GLU686 ALA687 LYS688 TYR689 ASP690 ALA691 PHE692 LEU693 VAL694 THR695 ASN696 MET697 VAL698 PRO699 MET700 TYR701 PRO702 ALA703 PHE704 LYS705 ARG706 VAL707 TRP708 THR709 TYR710 PHE711 GLN712 ARG713 VAL714 LEU715 VAL716 LYS717 LYS718 TYR719 ALA720 SER721 GLU722 ARG723 ASN724 GLY725 VAL726 ASN727 VAL728 ILE729 SER730 GLY731 PRO732 ILE733 PHE734 ASP735 TYR736 ASN737 TYR738 ASN739 GLY740 LEU741 ARG742 ASP743 ILE744 GLU745 ASP746 GLU747 ILE748 LYS749 GLN750 TYR751 VAL752 GLU753 GLY754 SER755 SER756 ILE757 PRO758 VAL759 PRO760 THR761 HIS762 TYR763 TYR764 SER765 ILE766 ILE767 THR768 SER769 CYS770 LEU771 ASP772 PHE773 THR774 GLN775 PRO776 ALA777 ASP778 LYS779 CYS780 ASP781 GLY782 PRO783 LEU784 SER785 VAL786 SER787 SER788 PHE789 ILE790 LEU791 PRO792 HIS793 ARG794 PRO795 ASP796 ASN797 ASP798 GLU799 SER800 CYS801 ASN802 SER803 SER804 GLU805 ASP806 GLU807 SER808 LYS809 TRP810 VAL811 GLU812 GLU813 LEU814 MET815 LYS816 MET817 HIS818 THR819 ALA820 ARG821 VAL822 ARG823 ASP824 ILE825 GLU826 HIS827 LEU828 THR829 GLY830 LEU831 ASP832 PHE833 TYR834 ARG835 LYS836 THR837 SER838 ARG839 SER840 TYR841 SER842 GLU843 ILE844 LEU845 THR846 LEU847 LYS848 THR849 TYR850 LEU851 HIS852 THR853 TYR854 GLU855

Ligands
Unit 2 NAG1 NAG2
Unit 3 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6
Unit 4 NAG1 NAG2
Unit 5 ZN1001 ZN1002 CA1003 NA1004 K1005 SO41006 NKP1007 SCN1008 SCN1009 EDO1010 EDO1011 EDO1012 EDO1013 EDO1014 EDO1015 EDO1016 EDO1017 EDO1018 EDO1019 EDO1020 EDO1021 EDO1022 EDO1023 EDO1024 EDO1025 EDO1026

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany