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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE CATALYTIC AND CARBOHYDRATE BINDING DOMA ENDOGLUCANASE D FROM CLOSTRIDIUM CELLULOVORANS BOUND TO CEL
Keywords CELLOTRIOSE, ENDOGLUCANASE, XYLANASE, CARBOHYDRATE BINDING D GLUCANASE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3NDZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENDOGLUCANASE D  A 345 2707 0
2  Protein   ENDOGLUCANASE D  E 107 782 0
3  Protein   ENDOGLUCANASE D  B 345 2707 0
4  Protein   ENDOGLUCANASE D  F 107 782 0
5  Protein   ENDOGLUCANASE D  C 345 2707 0
6  Protein   ENDOGLUCANASE D  G 107 782 0
7  Protein   ENDOGLUCANASE D  D 345 2707 0
8  Protein   ENDOGLUCANASE D  H 107 780 0
9  Ligand    I 3 0 34
10  Ligand    J 3 0 34
11  Ligand    K 3 0 34
12  Ligand    L 3 0 34
13  Ligand    M 3 0 34
14  Ligand    N 3 0 34
15 Water     1927 0 1927
total       3753 13954 2131
Proteins
Unit 1 SER4 THR5 ALA6 PHE7 THR8 GLY9 VAL10 ARG11 ASP12 VAL13 PRO14 ALA15 GLN16 GLN17 ILE18 VAL19 ASN20 GLU21 MET22 LYS23 VAL24 GLY25 TRP26 ASN27 LEU28 GLY29 ASN30 THR31 MET32 ASP33 ALA34 ILE35 GLY36 GLY37 GLU38 THR39 ASN40 TRP41 GLY42 ASN43 PRO44 MET45 THR46 THR47 HIS48 ALA49 MET50 ILE51 ASN52 LYS53 ILE54 LYS55 GLU56 ALA57 GLY58 PHE59 ASN60 THR61 LEU62 ARG63 LEU64 PRO65 VAL66 THR67 TRP68 ASP69 GLY70 HIS71 MET72 GLY73 ALA74 ALA75 PRO76 GLU77 TYR78 THR79 ILE80 ASP81 GLN82 THR83 TRP84 MET85 LYS86 ARG87 VAL88 GLU89 GLU90 ILE91 ALA92 ASN93 TYR94 ALA95 PHE96 ASP97 ASN98 ASP99 MET100 TYR101 VAL102 ILE103 ILE104 ASN105 LEU106 HIS107 HIS108 GLU109 ASN110 GLU111 TRP112 LEU113 LYS114 PRO115 PHE116 TYR117 ALA118 ASN119 GLU120 ALA121 GLN122 VAL123 LYS124 ALA125 GLN126 LEU127 THR128 LYS129 VAL130 TRP131 THR132 GLN133 ILE134 ALA135 ASN136 ASN137 PHE138 LYS139 LYS140 TYR141 GLY142 ASP143 HIS144 LEU145 ILE146 PHE147 GLU148 THR149 MET150 ASN151 GLU152 PRO153 ARG154 PRO155 VAL156 GLY157 ALA158 SER159 LEU160 GLN161 TRP162 THR163 GLY164 GLY165 SER166 TYR167 GLU168 ASN169 ARG170 GLU171 VAL172 VAL173 ASN174 ARG175 TYR176 ASN177 LEU178 THR179 ALA180 VAL181 ASN182 ALA183 ILE184 ARG185 ALA186 THR187 GLY188 GLY189 ASN190 ASN191 ALA192 THR193 ARG194 TYR195 ILE196 MET197 VAL198 PRO199 THR200 LEU201 ALA202 ALA203 SER204 ALA205 MET206 SER207 THR208 THR209 ILE210 ASN211 ASP212 LEU213 VAL214 ILE215 PRO216 ASN217 ASN218 ASP219 SER220 LYS221 VAL222 ILE223 VAL224 SER225 LEU226 HIS227 MET228 TYR229 SER230 PRO231 TYR232 PHE233 PHE234 ALA235 MET236 ASP237 ILE238 ASN239 GLY240 THR241 SER242 SER243 TRP244 GLY245 SER246 ASP247 TYR248 ASP249 LYS250 SER251 SER252 LEU253 ASP254 SER255 GLU256 PHE257 ASP258 ALA259 VAL260 TYR261 ASN262 LYS263 PHE264 VAL265 LYS266 ASN267 GLY268 ARG269 ALA270 VAL271 VAL272 ILE273 GLY274 GLU275 MET276 GLY277 SER278 ILE279 ASN280 LYS281 ASN282 ASN283 THR284 ALA285 ALA286 ARG287 VAL288 THR289 HIS290 ALA291 GLU292 TYR293 TYR294 ALA295 LYS296 SER297 ALA298 LYS299 ALA300 ARG301 GLY302 LEU303 THR304 PRO305 ILE306 TRP307 TRP308 ASP309 ASN310 GLY311 TYR312 SER313 VAL314 ALA315 GLY316 LYS317 ALA318 GLU319 THR320 PHE321 GLY322 ILE323 PHE324 ASN325 ARG326 SER327 ASN328 LEU329 THR330 TRP331 ASP332 ALA333 PRO334 GLU335 VAL336 MET337 LYS338 ALA339 PHE340 ILE341 LYS342 GLY343 ILE344 GLY345 GLY346 SER347 SER348
Unit 2 SER381 ALA382 VAL383 GLU384 VAL385 THR386 TYR387 ALA388 ILE389 THR390 ASN391 SER392 TRP393 GLY394 SER395 GLY396 ALA397 SER398 VAL399 ASN400 VAL401 THR402 ILE403 LYS404 ASN405 ASN406 GLY407 THR408 THR409 PRO410 ILE411 ASN412 GLY413 TRP414 THR415 LEU416 LYS417 TRP418 THR419 MET420 PRO421 ILE422 ASN423 GLN424 THR425 ILE426 THR427 ASN428 MET429 TRP430 SER431 ALA432 SER433 PHE434 VAL435 ALA436 SER437 GLY438 THR439 THR440 LEU441 SER442 VAL443 THR444 ASN445 ALA446 GLY447 TYR448 ASN449 GLY450 THR451 ILE452 ALA453 ALA454 ASN455 GLY456 GLY457 THR458 GLN459 SER460 PHE461 GLY462 PHE463 ASN464 ILE465 ASN466 TYR467 SER468 GLY469 VAL470 LEU471 SER472 LYS473 PRO474 THR475 GLY476 PHE477 THR478 VAL479 ASN480 GLY481 THR482 GLU483 CYS484 THR485 VAL486 LYS487
Unit 3 SER4 THR5 ALA6 PHE7 THR8 GLY9 VAL10 ARG11 ASP12 VAL13 PRO14 ALA15 GLN16 GLN17 ILE18 VAL19 ASN20 GLU21 MET22 LYS23 VAL24 GLY25 TRP26 ASN27 LEU28 GLY29 ASN30 THR31 MET32 ASP33 ALA34 ILE35 GLY36 GLY37 GLU38 THR39 ASN40 TRP41 GLY42 ASN43 PRO44 MET45 THR46 THR47 HIS48 ALA49 MET50 ILE51 ASN52 LYS53 ILE54 LYS55 GLU56 ALA57 GLY58 PHE59 ASN60 THR61 LEU62 ARG63 LEU64 PRO65 VAL66 THR67 TRP68 ASP69 GLY70 HIS71 MET72 GLY73 ALA74 ALA75 PRO76 GLU77 TYR78 THR79 ILE80 ASP81 GLN82 THR83 TRP84 MET85 LYS86 ARG87 VAL88 GLU89 GLU90 ILE91 ALA92 ASN93 TYR94 ALA95 PHE96 ASP97 ASN98 ASP99 MET100 TYR101 VAL102 ILE103 ILE104 ASN105 LEU106 HIS107 HIS108 GLU109 ASN110 GLU111 TRP112 LEU113 LYS114 PRO115 PHE116 TYR117 ALA118 ASN119 GLU120 ALA121 GLN122 VAL123 LYS124 ALA125 GLN126 LEU127 THR128 LYS129 VAL130 TRP131 THR132 GLN133 ILE134 ALA135 ASN136 ASN137 PHE138 LYS139 LYS140 TYR141 GLY142 ASP143 HIS144 LEU145 ILE146 PHE147 GLU148 THR149 MET150 ASN151 GLU152 PRO153 ARG154 PRO155 VAL156 GLY157 ALA158 SER159 LEU160 GLN161 TRP162 THR163 GLY164 GLY165 SER166 TYR167 GLU168 ASN169 ARG170 GLU171 VAL172 VAL173 ASN174 ARG175 TYR176 ASN177 LEU178 THR179 ALA180 VAL181 ASN182 ALA183 ILE184 ARG185 ALA186 THR187 GLY188 GLY189 ASN190 ASN191 ALA192 THR193 ARG194 TYR195 ILE196 MET197 VAL198 PRO199 THR200 LEU201 ALA202 ALA203 SER204 ALA205 MET206 SER207 THR208 THR209 ILE210 ASN211 ASP212 LEU213 VAL214 ILE215 PRO216 ASN217 ASN218 ASP219 SER220 LYS221 VAL222 ILE223 VAL224 SER225 LEU226 HIS227 MET228 TYR229 SER230 PRO231 TYR232 PHE233 PHE234 ALA235 MET236 ASP237 ILE238 ASN239 GLY240 THR241 SER242 SER243 TRP244 GLY245 SER246 ASP247 TYR248 ASP249 LYS250 SER251 SER252 LEU253 ASP254 SER255 GLU256 PHE257 ASP258 ALA259 VAL260 TYR261 ASN262 LYS263 PHE264 VAL265 LYS266 ASN267 GLY268 ARG269 ALA270 VAL271 VAL272 ILE273 GLY274 GLU275 MET276 GLY277 SER278 ILE279 ASN280 LYS281 ASN282 ASN283 THR284 ALA285 ALA286 ARG287 VAL288 THR289 HIS290 ALA291 GLU292 TYR293 TYR294 ALA295 LYS296 SER297 ALA298 LYS299 ALA300 ARG301 GLY302 LEU303 THR304 PRO305 ILE306 TRP307 TRP308 ASP309 ASN310 GLY311 TYR312 SER313 VAL314 ALA315 GLY316 LYS317 ALA318 GLU319 THR320 PHE321 GLY322 ILE323 PHE324 ASN325 ARG326 SER327 ASN328 LEU329 THR330 TRP331 ASP332 ALA333 PRO334 GLU335 VAL336 MET337 LYS338 ALA339 PHE340 ILE341 LYS342 GLY343 ILE344 GLY345 GLY346 SER347 SER348
Unit 4 SER381 ALA382 VAL383 GLU384 VAL385 THR386 TYR387 ALA388 ILE389 THR390 ASN391 SER392 TRP393 GLY394 SER395 GLY396 ALA397 SER398 VAL399 ASN400 VAL401 THR402 ILE403 LYS404 ASN405 ASN406 GLY407 THR408 THR409 PRO410 ILE411 ASN412 GLY413 TRP414 THR415 LEU416 LYS417 TRP418 THR419 MET420 PRO421 ILE422 ASN423 GLN424 THR425 ILE426 THR427 ASN428 MET429 TRP430 SER431 ALA432 SER433 PHE434 VAL435 ALA436 SER437 GLY438 THR439 THR440 LEU441 SER442 VAL443 THR444 ASN445 ALA446 GLY447 TYR448 ASN449 GLY450 THR451 ILE452 ALA453 ALA454 ASN455 GLY456 GLY457 THR458 GLN459 SER460 PHE461 GLY462 PHE463 ASN464 ILE465 ASN466 TYR467 SER468 GLY469 VAL470 LEU471 SER472 LYS473 PRO474 THR475 GLY476 PHE477 THR478 VAL479 ASN480 GLY481 THR482 GLU483 CYS484 THR485 VAL486 LYS487
Unit 5 SER4 THR5 ALA6 PHE7 THR8 GLY9 VAL10 ARG11 ASP12 VAL13 PRO14 ALA15 GLN16 GLN17 ILE18 VAL19 ASN20 GLU21 MET22 LYS23 VAL24 GLY25 TRP26 ASN27 LEU28 GLY29 ASN30 THR31 MET32 ASP33 ALA34 ILE35 GLY36 GLY37 GLU38 THR39 ASN40 TRP41 GLY42 ASN43 PRO44 MET45 THR46 THR47 HIS48 ALA49 MET50 ILE51 ASN52 LYS53 ILE54 LYS55 GLU56 ALA57 GLY58 PHE59 ASN60 THR61 LEU62 ARG63 LEU64 PRO65 VAL66 THR67 TRP68 ASP69 GLY70 HIS71 MET72 GLY73 ALA74 ALA75 PRO76 GLU77 TYR78 THR79 ILE80 ASP81 GLN82 THR83 TRP84 MET85 LYS86 ARG87 VAL88 GLU89 GLU90 ILE91 ALA92 ASN93 TYR94 ALA95 PHE96 ASP97 ASN98 ASP99 MET100 TYR101 VAL102 ILE103 ILE104 ASN105 LEU106 HIS107 HIS108 GLU109 ASN110 GLU111 TRP112 LEU113 LYS114 PRO115 PHE116 TYR117 ALA118 ASN119 GLU120 ALA121 GLN122 VAL123 LYS124 ALA125 GLN126 LEU127 THR128 LYS129 VAL130 TRP131 THR132 GLN133 ILE134 ALA135 ASN136 ASN137 PHE138 LYS139 LYS140 TYR141 GLY142 ASP143 HIS144 LEU145 ILE146 PHE147 GLU148 THR149 MET150 ASN151 GLU152 PRO153 ARG154 PRO155 VAL156 GLY157 ALA158 SER159 LEU160 GLN161 TRP162 THR163 GLY164 GLY165 SER166 TYR167 GLU168 ASN169 ARG170 GLU171 VAL172 VAL173 ASN174 ARG175 TYR176 ASN177 LEU178 THR179 ALA180 VAL181 ASN182 ALA183 ILE184 ARG185 ALA186 THR187 GLY188 GLY189 ASN190 ASN191 ALA192 THR193 ARG194 TYR195 ILE196 MET197 VAL198 PRO199 THR200 LEU201 ALA202 ALA203 SER204 ALA205 MET206 SER207 THR208 THR209 ILE210 ASN211 ASP212 LEU213 VAL214 ILE215 PRO216 ASN217 ASN218 ASP219 SER220 LYS221 VAL222 ILE223 VAL224 SER225 LEU226 HIS227 MET228 TYR229 SER230 PRO231 TYR232 PHE233 PHE234 ALA235 MET236 ASP237 ILE238 ASN239 GLY240 THR241 SER242 SER243 TRP244 GLY245 SER246 ASP247 TYR248 ASP249 LYS250 SER251 SER252 LEU253 ASP254 SER255 GLU256 PHE257 ASP258 ALA259 VAL260 TYR261 ASN262 LYS263 PHE264 VAL265 LYS266 ASN267 GLY268 ARG269 ALA270 VAL271 VAL272 ILE273 GLY274 GLU275 MET276 GLY277 SER278 ILE279 ASN280 LYS281 ASN282 ASN283 THR284 ALA285 ALA286 ARG287 VAL288 THR289 HIS290 ALA291 GLU292 TYR293 TYR294 ALA295 LYS296 SER297 ALA298 LYS299 ALA300 ARG301 GLY302 LEU303 THR304 PRO305 ILE306 TRP307 TRP308 ASP309 ASN310 GLY311 TYR312 SER313 VAL314 ALA315 GLY316 LYS317 ALA318 GLU319 THR320 PHE321 GLY322 ILE323 PHE324 ASN325 ARG326 SER327 ASN328 LEU329 THR330 TRP331 ASP332 ALA333 PRO334 GLU335 VAL336 MET337 LYS338 ALA339 PHE340 ILE341 LYS342 GLY343 ILE344 GLY345 GLY346 SER347 SER348
Unit 6 SER381 ALA382 VAL383 GLU384 VAL385 THR386 TYR387 ALA388 ILE389 THR390 ASN391 SER392 TRP393 GLY394 SER395 GLY396 ALA397 SER398 VAL399 ASN400 VAL401 THR402 ILE403 LYS404 ASN405 ASN406 GLY407 THR408 THR409 PRO410 ILE411 ASN412 GLY413 TRP414 THR415 LEU416 LYS417 TRP418 THR419 MET420 PRO421 ILE422 ASN423 GLN424 THR425 ILE426 THR427 ASN428 MET429 TRP430 SER431 ALA432 SER433 PHE434 VAL435 ALA436 SER437 GLY438 THR439 THR440 LEU441 SER442 VAL443 THR444 ASN445 ALA446 GLY447 TYR448 ASN449 GLY450 THR451 ILE452 ALA453 ALA454 ASN455 GLY456 GLY457 THR458 GLN459 SER460 PHE461 GLY462 PHE463 ASN464 ILE465 ASN466 TYR467 SER468 GLY469 VAL470 LEU471 SER472 LYS473 PRO474 THR475 GLY476 PHE477 THR478 VAL479 ASN480 GLY481 THR482 GLU483 CYS484 THR485 VAL486 LYS487
Unit 7 SER4 THR5 ALA6 PHE7 THR8 GLY9 VAL10 ARG11 ASP12 VAL13 PRO14 ALA15 GLN16 GLN17 ILE18 VAL19 ASN20 GLU21 MET22 LYS23 VAL24 GLY25 TRP26 ASN27 LEU28 GLY29 ASN30 THR31 MET32 ASP33 ALA34 ILE35 GLY36 GLY37 GLU38 THR39 ASN40 TRP41 GLY42 ASN43 PRO44 MET45 THR46 THR47 HIS48 ALA49 MET50 ILE51 ASN52 LYS53 ILE54 LYS55 GLU56 ALA57 GLY58 PHE59 ASN60 THR61 LEU62 ARG63 LEU64 PRO65 VAL66 THR67 TRP68 ASP69 GLY70 HIS71 MET72 GLY73 ALA74 ALA75 PRO76 GLU77 TYR78 THR79 ILE80 ASP81 GLN82 THR83 TRP84 MET85 LYS86 ARG87 VAL88 GLU89 GLU90 ILE91 ALA92 ASN93 TYR94 ALA95 PHE96 ASP97 ASN98 ASP99 MET100 TYR101 VAL102 ILE103 ILE104 ASN105 LEU106 HIS107 HIS108 GLU109 ASN110 GLU111 TRP112 LEU113 LYS114 PRO115 PHE116 TYR117 ALA118 ASN119 GLU120 ALA121 GLN122 VAL123 LYS124 ALA125 GLN126 LEU127 THR128 LYS129 VAL130 TRP131 THR132 GLN133 ILE134 ALA135 ASN136 ASN137 PHE138 LYS139 LYS140 TYR141 GLY142 ASP143 HIS144 LEU145 ILE146 PHE147 GLU148 THR149 MET150 ASN151 GLU152 PRO153 ARG154 PRO155 VAL156 GLY157 ALA158 SER159 LEU160 GLN161 TRP162 THR163 GLY164 GLY165 SER166 TYR167 GLU168 ASN169 ARG170 GLU171 VAL172 VAL173 ASN174 ARG175 TYR176 ASN177 LEU178 THR179 ALA180 VAL181 ASN182 ALA183 ILE184 ARG185 ALA186 THR187 GLY188 GLY189 ASN190 ASN191 ALA192 THR193 ARG194 TYR195 ILE196 MET197 VAL198 PRO199 THR200 LEU201 ALA202 ALA203 SER204 ALA205 MET206 SER207 THR208 THR209 ILE210 ASN211 ASP212 LEU213 VAL214 ILE215 PRO216 ASN217 ASN218 ASP219 SER220 LYS221 VAL222 ILE223 VAL224 SER225 LEU226 HIS227 MET228 TYR229 SER230 PRO231 TYR232 PHE233 PHE234 ALA235 MET236 ASP237 ILE238 ASN239 GLY240 THR241 SER242 SER243 TRP244 GLY245 SER246 ASP247 TYR248 ASP249 LYS250 SER251 SER252 LEU253 ASP254 SER255 GLU256 PHE257 ASP258 ALA259 VAL260 TYR261 ASN262 LYS263 PHE264 VAL265 LYS266 ASN267 GLY268 ARG269 ALA270 VAL271 VAL272 ILE273 GLY274 GLU275 MET276 GLY277 SER278 ILE279 ASN280 LYS281 ASN282 ASN283 THR284 ALA285 ALA286 ARG287 VAL288 THR289 HIS290 ALA291 GLU292 TYR293 TYR294 ALA295 LYS296 SER297 ALA298 LYS299 ALA300 ARG301 GLY302 LEU303 THR304 PRO305 ILE306 TRP307 TRP308 ASP309 ASN310 GLY311 TYR312 SER313 VAL314 ALA315 GLY316 LYS317 ALA318 GLU319 THR320 PHE321 GLY322 ILE323 PHE324 ASN325 ARG326 SER327 ASN328 LEU329 THR330 TRP331 ASP332 ALA333 PRO334 GLU335 VAL336 MET337 LYS338 ALA339 PHE340 ILE341 LYS342 GLY343 ILE344 GLY345 GLY346 SER347 SER348
Unit 8 SER381 ALA382 VAL383 GLU384 VAL385 THR386 TYR387 ALA388 ILE389 THR390 ASN391 SER392 TRP393 GLY394 SER395 GLY396 ALA397 SER398 VAL399 ASN400 VAL401 THR402 ILE403 LYS404 ASN405 ASN406 GLY407 THR408 THR409 PRO410 ILE411 ASN412 GLY413 TRP414 THR415 LEU416 LYS417 TRP418 THR419 MET420 PRO421 ILE422 ASN423 GLN424 THR425 ILE426 THR427 ASN428 MET429 TRP430 SER431 ALA432 SER433 PHE434 VAL435 ALA436 SER437 GLY438 THR439 THR440 LEU441 SER442 VAL443 THR444 ASN445 ALA446 GLY447 TYR448 ASN449 GLY450 THR451 ILE452 ALA453 ALA454 ASN455 GLY456 GLY457 THR458 GLN459 SER460 PHE461 GLY462 PHE463 ASN464 ILE465 ASN466 TYR467 SER468 GLY469 VAL470 LEU471 SER472 LYS473 PRO474 THR475 GLY476 PHE477 THR478 VAL479 ASN480 GLY481 THR482 GLU483 CYS484 THR485 VAL486 LYS487
Ligands
Unit 9 BGC1 BGC2 BGC3
Unit 10 BGC1 BGC2 BGC3
Unit 11 BGC1 BGC2 BGC3
Unit 12 BGC1 BGC2 BGC3
Unit 13 BGC1 BGC2 BGC3
Unit 14 BGC1 BGC2 BGC3
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany