3NDV - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE N-TERMINAL BETA-AMINOPEPTIDASE BAPA COMPLEX WITH AMPICILLIN
• Keywords: NTN-HYDROLASE, BETA-AMINOPEPTIDASE, BETA-PEPTIDE, ALPHA-BETA ALPHA SANDWICH, N-TERMINAL BETA-AMINOPEPTIDASE, HYDROLASE-A COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3NDV	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	BETA-PEPTIDYL AMINOPEPTIDASE	A	367	2657	0
2	Protein	BETA-PEPTIDYL AMINOPEPTIDASE	B	365	2641	0
3	Protein	BETA-PEPTIDYL AMINOPEPTIDASE	C	366	2650	0
4	Protein	BETA-PEPTIDYL AMINOPEPTIDASE	D	367	2657	0
5	Ligand	BETA-PEPTIDYL AMINOPEPTIDASE	A	3	0	54
6	Ligand	BETA-PEPTIDYL AMINOPEPTIDASE	B	3	0	36
7	Ligand	BETA-PEPTIDYL AMINOPEPTIDASE	C	2	0	30
8	Ligand	BETA-PEPTIDYL AMINOPEPTIDASE	D	2	0	48
9	Water			1138	0	1138
total				2613	10605	1306

Proteins

Unit 1	GLY 1 PRO 2 ARG 3 ALA 4 ARG 5 ASP 6 LEU 7 GLY 8 VAL 9 PRO 10 PHE 11 GLU 12 GLY 13 THR 14 PRO 15 GLY 16 ALA 17 LEU 18 ASN 19 ALA 20 ILE 21 THR 22 ASP 23 VAL 24 ALA 25 GLY 26 VAL 27 GLU 28 VAL 29 GLY 30 HIS 31 THR 32 THR 33 VAL 34 ILE 35 SER 36 GLY 37 ASP 38 GLY 39 ALA 40 MET 41 VAL 42 ILE 43 GLY 44 LYS 45 GLY 46 PRO 47 TYR 48 ARG 49 THR 50 GLY 51 VAL 52 THR 53 ILE 54 ILE 55 HIS 56 PRO 57 LEU 58 GLY 59 LYS 60 THR 61 SER 62 LEU 63 ASP 64 GLY 65 VAL 66 ALA 67 ALA 68 GLY 69 ARG 70 ALA 71 VAL 72 ILE 73 ASN 74 GLY 75 THR 76 GLY 77 GLU 78 TRP 79 THR 80 GLY 81 MET 82 HIS 83 LEU 84 VAL 85 ASP 86 GLU 87 VAL 88 GLY 89 GLN 90 PHE 91 LEU 92 GLY 93 PRO 94 ILE 95 ALA 96 LEU 97 THR 98 GLY 99 THR 100 GLY 101 ASN 102 VAL 103 GLY 104 LEU 105 VAL 106 HIS 107 GLN 108 SER 109 MET 110 MET 111 ASP 112 TRP 113 SER 114 VAL 115 GLY 116 LYS 117 VAL 118 PRO 119 GLU 120 GLU 121 ALA 122 LEU 123 PHE 124 SER 125 ARG 126 LEU 127 LEU 128 PRO 129 VAL 130 VAL 131 ALA 132 GLU 133 THR 134 LEU 135 ASP 136 ASN 137 ARG 138 LEU 139 ASN 140 ASP 141 VAL 142 PHE 143 GLY 144 HIS 145 GLY 146 LEU 147 THR 148 ARG 149 ASP 150 HIS 151 VAL 152 PHE 153 ALA 154 ALA 155 LEU 156 ASP 157 GLY 158 ALA 159 LYS 160 GLY 161 GLY 162 PRO 163 VAL 164 ALA 165 GLU 166 GLY 167 ASN 168 VAL 169 GLY 170 GLY 171 GLY 172 THR 173 GLY 174 MET 175 ILE 176 ALA 177 TYR 178 THR 179 PHE 180 LYS 181 GLY 182 GLY 183 ILE 184 GLY 185 THR 186 SER 187 SER 188 ARG 189 VAL 190 VAL 191 SER 192 ALA 193 GLY 194 ASP 195 THR 196 ARG 197 TYR 198 THR 199 VAL 200 GLY 201 VAL 202 LEU 203 VAL 204 GLN 205 ALA 206 ASN 207 HIS 208 GLY 209 ASP 210 ARG 211 ASN 212 ASP 213 LEU 214 ARG 215 ILE 216 ALA 217 GLY 218 VAL 219 GLN 220 ILE 221 GLY 222 LYS 223 GLU 224 ILE 225 LYS 226 GLY 227 ALA 228 TRP 229 PRO 230 GLU 231 VAL 232 ASN 233 GLY 234 ILE 235 VAL 236 ALA 237 ALA 238 GLY 239 PRO 240 ASP 241 ALA 242 GLY 243 LYS 244 PRO 245 SER 250 LEU 251 LEU 252 ILE 253 VAL 254 ILE 255 ALA 256 THR 257 ASP 258 ALA 259 PRO 260 LEU 261 MET 262 PRO 263 HIS 264 GLN 265 LEU 266 GLU 267 ARG 268 MET 269 ALA 270 ARG 271 ARG 272 ALA 273 ALA 274 LEU 275 GLY 276 VAL 277 GLY 278 ARG 279 ASN 280 GLY 281 SER 282 THR 283 ALA 284 GLY 285 ALA 286 LEU 287 SER 288 GLY 289 GLU 290 PHE 291 ALA 292 LEU 293 ALA 294 PHE 295 SER 296 THR 297 SER 298 HIS 299 VAL 300 ILE 301 PRO 302 LEU 303 GLY 304 GLY 305 LYS 306 PRO 307 ARG 308 LEU 309 PRO 310 ALA 311 ILE 312 ILE 313 ASN 314 ASP 315 THR 316 ASP 317 SER 318 GLU 319 THR 320 MET 321 ASN 322 ALA 323 LEU 324 PHE 325 ARG 326 GLY 327 VAL 328 VAL 329 GLN 330 ALA 331 THR 332 GLU 333 GLU 334 ALA 335 LEU 336 VAL 337 ASN 338 GLN 339 LEU 340 VAL 341 ALA 342 SER 343 GLU 344 THR 345 MET 346 THR 347 GLY 348 ALA 349 ASN 350 ASN 351 ALA 352 LYS 353 VAL 354 TYR 355 GLY 356 ILE 357 PRO 358 HIS 359 ASP 360 GLN 361 LEU 362 ALA 363 ARG 364 ILE 365 MET 366 LYS 367 ALA 368 ARG 369 PHE 370 PRO 371
Unit 2	GLY 1 PRO 2 ARG 3 ALA 4 ARG 5 ASP 6 LEU 7 GLY 8 VAL 9 PRO 10 PHE 11 GLU 12 GLY 13 THR 14 PRO 15 GLY 16 ALA 17 LEU 18 ASN 19 ALA 20 ILE 21 THR 22 ASP 23 VAL 24 ALA 25 GLY 26 VAL 27 GLU 28 VAL 29 GLY 30 HIS 31 THR 32 THR 33 VAL 34 ILE 35 SER 36 GLY 37 ASP 38 GLY 39 ALA 40 MET 41 VAL 42 ILE 43 GLY 44 LYS 45 GLY 46 PRO 47 TYR 48 ARG 49 THR 50 GLY 51 VAL 52 THR 53 ILE 54 ILE 55 HIS 56 PRO 57 LEU 58 GLY 59 LYS 60 THR 61 SER 62 LEU 63 ASP 64 GLY 65 VAL 66 ALA 67 ALA 68 GLY 69 ARG 70 ALA 71 VAL 72 ILE 73 ASN 74 GLY 75 THR 76 GLY 77 GLU 78 TRP 79 THR 80 GLY 81 MET 82 HIS 83 LEU 84 VAL 85 ASP 86 GLU 87 VAL 88 GLY 89 GLN 90 PHE 91 LEU 92 GLY 93 PRO 94 ILE 95 ALA 96 LEU 97 THR 98 GLY 99 THR 100 GLY 101 ASN 102 VAL 103 GLY 104 LEU 105 VAL 106 HIS 107 GLN 108 SER 109 MET 110 MET 111 ASP 112 TRP 113 SER 114 VAL 115 GLY 116 LYS 117 VAL 118 PRO 119 GLU 120 GLU 121 ALA 122 LEU 123 PHE 124 SER 125 ARG 126 LEU 127 LEU 128 PRO 129 VAL 130 VAL 131 ALA 132 GLU 133 THR 134 LEU 135 ASP 136 ASN 137 ARG 138 LEU 139 ASN 140 ASP 141 VAL 142 PHE 143 GLY 144 HIS 145 GLY 146 LEU 147 THR 148 ARG 149 ASP 150 HIS 151 VAL 152 PHE 153 ALA 154 ALA 155 LEU 156 ASP 157 GLY 158 ALA 159 LYS 160 GLY 161 GLY 162 PRO 163 VAL 164 ALA 165 GLU 166 GLY 167 ASN 168 VAL 169 GLY 170 GLY 171 GLY 172 THR 173 GLY 174 MET 175 ILE 176 ALA 177 TYR 178 THR 179 PHE 180 LYS 181 GLY 182 GLY 183 ILE 184 GLY 185 THR 186 SER 187 SER 188 ARG 189 VAL 190 VAL 191 SER 192 ALA 193 GLY 194 ASP 195 THR 196 ARG 197 TYR 198 THR 199 VAL 200 GLY 201 VAL 202 LEU 203 VAL 204 GLN 205 ALA 206 ASN 207 HIS 208 GLY 209 ASP 210 ARG 211 ASN 212 ASP 213 LEU 214 ARG 215 ILE 216 ALA 217 GLY 218 VAL 219 GLN 220 ILE 221 GLY 222 LYS 223 GLU 224 ILE 225 LYS 226 GLY 227 ALA 228 TRP 229 PRO 230 GLU 231 VAL 232 ASN 233 GLY 234 ILE 235 VAL 236 ALA 237 ALA 238 GLY 239 PRO 240 ASP 241 ALA 242 GLY 243 SER 250 LEU 251 LEU 252 ILE 253 VAL 254 ILE 255 ALA 256 THR 257 ASP 258 ALA 259 PRO 260 LEU 261 MET 262 PRO 263 HIS 264 GLN 265 LEU 266 GLU 267 ARG 268 MET 269 ALA 270 ARG 271 ARG 272 ALA 273 ALA 274 LEU 275 GLY 276 VAL 277 GLY 278 ARG 279 ASN 280 GLY 281 SER 282 THR 283 ALA 284 GLY 285 ALA 286 LEU 287 SER 288 GLY 289 GLU 290 PHE 291 ALA 292 LEU 293 ALA 294 PHE 295 SER 296 THR 297 SER 298 HIS 299 VAL 300 ILE 301 PRO 302 LEU 303 GLY 304 GLY 305 LYS 306 PRO 307 ARG 308 LEU 309 PRO 310 ALA 311 ILE 312 ILE 313 ASN 314 ASP 315 THR 316 ASP 317 SER 318 GLU 319 THR 320 MET 321 ASN 322 ALA 323 LEU 324 PHE 325 ARG 326 GLY 327 VAL 328 VAL 329 GLN 330 ALA 331 THR 332 GLU 333 GLU 334 ALA 335 LEU 336 VAL 337 ASN 338 GLN 339 LEU 340 VAL 341 ALA 342 SER 343 GLU 344 THR 345 MET 346 THR 347 GLY 348 ALA 349 ASN 350 ASN 351 ALA 352 LYS 353 VAL 354 TYR 355 GLY 356 ILE 357 PRO 358 HIS 359 ASP 360 GLN 361 LEU 362 ALA 363 ARG 364 ILE 365 MET 366 LYS 367 ALA 368 ARG 369 PHE 370 PRO 371
Unit 3	GLY 1 PRO 2 ARG 3 ALA 4 ARG 5 ASP 6 LEU 7 GLY 8 VAL 9 PRO 10 PHE 11 GLU 12 GLY 13 THR 14 PRO 15 GLY 16 ALA 17 LEU 18 ASN 19 ALA 20 ILE 21 THR 22 ASP 23 VAL 24 ALA 25 GLY 26 VAL 27 GLU 28 VAL 29 GLY 30 HIS 31 THR 32 THR 33 VAL 34 ILE 35 SER 36 GLY 37 ASP 38 GLY 39 ALA 40 MET 41 VAL 42 ILE 43 GLY 44 LYS 45 GLY 46 PRO 47 TYR 48 ARG 49 THR 50 GLY 51 VAL 52 THR 53 ILE 54 ILE 55 HIS 56 PRO 57 LEU 58 GLY 59 LYS 60 THR 61 SER 62 LEU 63 ASP 64 GLY 65 VAL 66 ALA 67 ALA 68 GLY 69 ARG 70 ALA 71 VAL 72 ILE 73 ASN 74 GLY 75 THR 76 GLY 77 GLU 78 TRP 79 THR 80 GLY 81 MET 82 HIS 83 LEU 84 VAL 85 ASP 86 GLU 87 VAL 88 GLY 89 GLN 90 PHE 91 LEU 92 GLY 93 PRO 94 ILE 95 ALA 96 LEU 97 THR 98 GLY 99 THR 100 GLY 101 ASN 102 VAL 103 GLY 104 LEU 105 VAL 106 HIS 107 GLN 108 SER 109 MET 110 MET 111 ASP 112 TRP 113 SER 114 VAL 115 GLY 116 LYS 117 VAL 118 PRO 119 GLU 120 GLU 121 ALA 122 LEU 123 PHE 124 SER 125 ARG 126 LEU 127 LEU 128 PRO 129 VAL 130 VAL 131 ALA 132 GLU 133 THR 134 LEU 135 ASP 136 ASN 137 ARG 138 LEU 139 ASN 140 ASP 141 VAL 142 PHE 143 GLY 144 HIS 145 GLY 146 LEU 147 THR 148 ARG 149 ASP 150 HIS 151 VAL 152 PHE 153 ALA 154 ALA 155 LEU 156 ASP 157 GLY 158 ALA 159 LYS 160 GLY 161 GLY 162 PRO 163 VAL 164 ALA 165 GLU 166 GLY 167 ASN 168 VAL 169 GLY 170 GLY 171 GLY 172 THR 173 GLY 174 MET 175 ILE 176 ALA 177 TYR 178 THR 179 PHE 180 LYS 181 GLY 182 GLY 183 ILE 184 GLY 185 THR 186 SER 187 SER 188 ARG 189 VAL 190 VAL 191 SER 192 ALA 193 GLY 194 ASP 195 THR 196 ARG 197 TYR 198 THR 199 VAL 200 GLY 201 VAL 202 LEU 203 VAL 204 GLN 205 ALA 206 ASN 207 HIS 208 GLY 209 ASP 210 ARG 211 ASN 212 ASP 213 LEU 214 ARG 215 ILE 216 ALA 217 GLY 218 VAL 219 GLN 220 ILE 221 GLY 222 LYS 223 GLU 224 ILE 225 LYS 226 GLY 227 ALA 228 TRP 229 PRO 230 GLU 231 VAL 232 ASN 233 GLY 234 ILE 235 VAL 236 ALA 237 ALA 238 GLY 239 PRO 240 ASP 241 ALA 242 GLY 243 LYS 244 SER 250 LEU 251 LEU 252 ILE 253 VAL 254 ILE 255 ALA 256 THR 257 ASP 258 ALA 259 PRO 260 LEU 261 MET 262 PRO 263 HIS 264 GLN 265 LEU 266 GLU 267 ARG 268 MET 269 ALA 270 ARG 271 ARG 272 ALA 273 ALA 274 LEU 275 GLY 276 VAL 277 GLY 278 ARG 279 ASN 280 GLY 281 SER 282 THR 283 ALA 284 GLY 285 ALA 286 LEU 287 SER 288 GLY 289 GLU 290 PHE 291 ALA 292 LEU 293 ALA 294 PHE 295 SER 296 THR 297 SER 298 HIS 299 VAL 300 ILE 301 PRO 302 LEU 303 GLY 304 GLY 305 LYS 306 PRO 307 ARG 308 LEU 309 PRO 310 ALA 311 ILE 312 ILE 313 ASN 314 ASP 315 THR 316 ASP 317 SER 318 GLU 319 THR 320 MET 321 ASN 322 ALA 323 LEU 324 PHE 325 ARG 326 GLY 327 VAL 328 VAL 329 GLN 330 ALA 331 THR 332 GLU 333 GLU 334 ALA 335 LEU 336 VAL 337 ASN 338 GLN 339 LEU 340 VAL 341 ALA 342 SER 343 GLU 344 THR 345 MET 346 THR 347 GLY 348 ALA 349 ASN 350 ASN 351 ALA 352 LYS 353 VAL 354 TYR 355 GLY 356 ILE 357 PRO 358 HIS 359 ASP 360 GLN 361 LEU 362 ALA 363 ARG 364 ILE 365 MET 366 LYS 367 ALA 368 ARG 369 PHE 370 PRO 371
Unit 4	GLY 1 PRO 2 ARG 3 ALA 4 ARG 5 ASP 6 LEU 7 GLY 8 VAL 9 PRO 10 PHE 11 GLU 12 GLY 13 THR 14 PRO 15 GLY 16 ALA 17 LEU 18 ASN 19 ALA 20 ILE 21 THR 22 ASP 23 VAL 24 ALA 25 GLY 26 VAL 27 GLU 28 VAL 29 GLY 30 HIS 31 THR 32 THR 33 VAL 34 ILE 35 SER 36 GLY 37 ASP 38 GLY 39 ALA 40 MET 41 VAL 42 ILE 43 GLY 44 LYS 45 GLY 46 PRO 47 TYR 48 ARG 49 THR 50 GLY 51 VAL 52 THR 53 ILE 54 ILE 55 HIS 56 PRO 57 LEU 58 GLY 59 LYS 60 THR 61 SER 62 LEU 63 ASP 64 GLY 65 VAL 66 ALA 67 ALA 68 GLY 69 ARG 70 ALA 71 VAL 72 ILE 73 ASN 74 GLY 75 THR 76 GLY 77 GLU 78 TRP 79 THR 80 GLY 81 MET 82 HIS 83 LEU 84 VAL 85 ASP 86 GLU 87 VAL 88 GLY 89 GLN 90 PHE 91 LEU 92 GLY 93 PRO 94 ILE 95 ALA 96 LEU 97 THR 98 GLY 99 THR 100 GLY 101 ASN 102 VAL 103 GLY 104 LEU 105 VAL 106 HIS 107 GLN 108 SER 109 MET 110 MET 111 ASP 112 TRP 113 SER 114 VAL 115 GLY 116 LYS 117 VAL 118 PRO 119 GLU 120 GLU 121 ALA 122 LEU 123 PHE 124 SER 125 ARG 126 LEU 127 LEU 128 PRO 129 VAL 130 VAL 131 ALA 132 GLU 133 THR 134 LEU 135 ASP 136 ASN 137 ARG 138 LEU 139 ASN 140 ASP 141 VAL 142 PHE 143 GLY 144 HIS 145 GLY 146 LEU 147 THR 148 ARG 149 ASP 150 HIS 151 VAL 152 PHE 153 ALA 154 ALA 155 LEU 156 ASP 157 GLY 158 ALA 159 LYS 160 GLY 161 GLY 162 PRO 163 VAL 164 ALA 165 GLU 166 GLY 167 ASN 168 VAL 169 GLY 170 GLY 171 GLY 172 THR 173 GLY 174 MET 175 ILE 176 ALA 177 TYR 178 THR 179 PHE 180 LYS 181 GLY 182 GLY 183 ILE 184 GLY 185 THR 186 SER 187 SER 188 ARG 189 VAL 190 VAL 191 SER 192 ALA 193 GLY 194 ASP 195 THR 196 ARG 197 TYR 198 THR 199 VAL 200 GLY 201 VAL 202 LEU 203 VAL 204 GLN 205 ALA 206 ASN 207 HIS 208 GLY 209 ASP 210 ARG 211 ASN 212 ASP 213 LEU 214 ARG 215 ILE 216 ALA 217 GLY 218 VAL 219 GLN 220 ILE 221 GLY 222 LYS 223 GLU 224 ILE 225 LYS 226 GLY 227 ALA 228 TRP 229 PRO 230 GLU 231 VAL 232 ASN 233 GLY 234 ILE 235 VAL 236 ALA 237 ALA 238 GLY 239 PRO 240 ASP 241 ALA 242 GLY 243 LYS 244 PRO 245 SER 250 LEU 251 LEU 252 ILE 253 VAL 254 ILE 255 ALA 256 THR 257 ASP 258 ALA 259 PRO 260 LEU 261 MET 262 PRO 263 HIS 264 GLN 265 LEU 266 GLU 267 ARG 268 MET 269 ALA 270 ARG 271 ARG 272 ALA 273 ALA 274 LEU 275 GLY 276 VAL 277 GLY 278 ARG 279 ASN 280 GLY 281 SER 282 THR 283 ALA 284 GLY 285 ALA 286 LEU 287 SER 288 GLY 289 GLU 290 PHE 291 ALA 292 LEU 293 ALA 294 PHE 295 SER 296 THR 297 SER 298 HIS 299 VAL 300 ILE 301 PRO 302 LEU 303 GLY 304 GLY 305 LYS 306 PRO 307 ARG 308 LEU 309 PRO 310 ALA 311 ILE 312 ILE 313 ASN 314 ASP 315 THR 316 ASP 317 SER 318 GLU 319 THR 320 MET 321 ASN 322 ALA 323 LEU 324 PHE 325 ARG 326 GLY 327 VAL 328 VAL 329 GLN 330 ALA 331 THR 332 GLU 333 GLU 334 ALA 335 LEU 336 VAL 337 ASN 338 GLN 339 LEU 340 VAL 341 ALA 342 SER 343 GLU 344 THR 345 MET 346 THR 347 GLY 348 ALA 349 ASN 350 ASN 351 ALA 352 LYS 353 VAL 354 TYR 355 GLY 356 ILE 357 PRO 358 HIS 359 ASP 360 GLN 361 LEU 362 ALA 363 ARG 364 ILE 365 MET 366 LYS 367 ALA 368 ARG 369 PHE 370 PRO 371

Ligands

Unit 5	GOL 374 AIC 375 NDV 376
Unit 6	GOL 374 GOL 375 AIC 376
Unit 7	GOL 374 AIC 375
Unit 8	AIC 374 NDV 375