3NDU - Sequence, Chains, Asymmetric and Biological Units

• Title: HIV-1 PROTEASE SAQUINAVIR:RITONAVIR 1:5 COMPLEX STRUCTURE
• Keywords: HIV-1 PROTEASE, HYDROLASE, AIDS, ASPARTYL PROTEASE, SAQUINAV CARBAMYLATION, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3NDU	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROTEASE	A	100	756	3
2	Protein	PROTEASE	B	100	756	3
3	Protein	PROTEASE	C	99	756	0
4	Protein	PROTEASE	D	99	756	0
5	Ligand	PROTEASE	A	8	0	70
6	Ligand	PROTEASE	B	7	0	18
7	Ligand	PROTEASE	C	6	0	20
8	Ligand	PROTEASE	D	2	0	53
9	Water			262	0	262
total				683	3024	429

Proteins

Unit 1	ARF 1 PRO 2 GLN 3 ILE 4 THR 5 LEU 6 TRP 7 LYS 8 ARG 9 PRO 10 LEU 11 VAL 12 THR 13 ILE 14 LYS 15 ILE 16 GLY 17 GLY 18 GLN 19 LEU 20 LYS 21 GLU 22 ALA 23 LEU 24 LEU 25 ASP 26 THR 27 GLY 28 ALA 29 ASP 30 ASP 31 THR 32 VAL 33 ILE 34 GLU 35 GLU 36 MET 37 SER 38 LEU 39 PRO 40 GLY 41 ARG 42 TRP 43 LYS 44 PRO 45 LYS 46 MET 47 ILE 48 GLY 49 GLY 50 ILE 51 GLY 52 GLY 53 PHE 54 ILE 55 LYS 56 VAL 57 ARG 58 GLN 59 TYR 60 ASP 61 GLN 62 ILE 63 ILE 64 ILE 65 GLU 66 ILE 67 ALA 68 GLY 69 HIS 70 LYS 71 ALA 72 ILE 73 GLY 74 THR 75 VAL 76 LEU 77 VAL 78 GLY 79 PRO 80 THR 81 PRO 82 VAL 83 ASN 84 ILE 85 ILE 86 GLY 87 ARG 88 ASN 89 LEU 90 LEU 91 THR 92 GLN 93 ILE 94 GLY 95 ALA 96 THR 97 LEU 98 ASN 99 PHE 100
Unit 2	ARF 1 PRO 2 GLN 3 ILE 4 THR 5 LEU 6 TRP 7 LYS 8 ARG 9 PRO 10 LEU 11 VAL 12 THR 13 ILE 14 LYS 15 ILE 16 GLY 17 GLY 18 GLN 19 LEU 20 LYS 21 GLU 22 ALA 23 LEU 24 LEU 25 ASP 26 THR 27 GLY 28 ALA 29 ASP 30 ASP 31 THR 32 VAL 33 ILE 34 GLU 35 GLU 36 MET 37 SER 38 LEU 39 PRO 40 GLY 41 ARG 42 TRP 43 LYS 44 PRO 45 LYS 46 MET 47 ILE 48 GLY 49 GLY 50 ILE 51 GLY 52 GLY 53 PHE 54 ILE 55 LYS 56 VAL 57 ARG 58 GLN 59 TYR 60 ASP 61 GLN 62 ILE 63 ILE 64 ILE 65 GLU 66 ILE 67 ALA 68 GLY 69 HIS 70 LYS 71 ALA 72 ILE 73 GLY 74 THR 75 VAL 76 LEU 77 VAL 78 GLY 79 PRO 80 THR 81 PRO 82 VAL 83 ASN 84 ILE 85 ILE 86 GLY 87 ARG 88 ASN 89 LEU 90 LEU 91 THR 92 GLN 93 ILE 94 GLY 95 ALA 96 THR 97 LEU 98 ASN 99 PHE 100
Unit 3	PRO 1 GLN 2 ILE 3 THR 4 LEU 5 TRP 6 LYS 7 ARG 8 PRO 9 LEU 10 VAL 11 THR 12 ILE 13 LYS 14 ILE 15 GLY 16 GLY 17 GLN 18 LEU 19 LYS 20 GLU 21 ALA 22 LEU 23 LEU 24 ASP 25 THR 26 GLY 27 ALA 28 ASP 29 ASP 30 THR 31 VAL 32 ILE 33 GLU 34 GLU 35 MET 36 SER 37 LEU 38 PRO 39 GLY 40 ARG 41 TRP 42 LYS 43 PRO 44 LYS 45 MET 46 ILE 47 GLY 48 GLY 49 ILE 50 GLY 51 GLY 52 PHE 53 ILE 54 LYS 55 VAL 56 ARG 57 GLN 58 TYR 59 ASP 60 GLN 61 ILE 62 ILE 63 ILE 64 GLU 65 ILE 66 ALA 67 GLY 68 HIS 69 LYS 70 ALA 71 ILE 72 GLY 73 THR 74 VAL 75 LEU 76 VAL 77 GLY 78 PRO 79 THR 80 PRO 81 VAL 82 ASN 83 ILE 84 ILE 85 GLY 86 ARG 87 ASN 88 LEU 89 LEU 90 THR 91 GLN 92 ILE 93 GLY 94 ALA 95 THR 96 LEU 97 ASN 98 PHE 99
Unit 4	PRO 1 GLN 2 ILE 3 THR 4 LEU 5 TRP 6 LYS 7 ARG 8 PRO 9 LEU 10 VAL 11 THR 12 ILE 13 LYS 14 ILE 15 GLY 16 GLY 17 GLN 18 LEU 19 LYS 20 GLU 21 ALA 22 LEU 23 LEU 24 ASP 25 THR 26 GLY 27 ALA 28 ASP 29 ASP 30 THR 31 VAL 32 ILE 33 GLU 34 GLU 35 MET 36 SER 37 LEU 38 PRO 39 GLY 40 ARG 41 TRP 42 LYS 43 PRO 44 LYS 45 MET 46 ILE 47 GLY 48 GLY 49 ILE 50 GLY 51 GLY 52 PHE 53 ILE 54 LYS 55 VAL 56 ARG 57 GLN 58 TYR 59 ASP 60 GLN 61 ILE 62 ILE 63 ILE 64 GLU 65 ILE 66 ALA 67 GLY 68 HIS 69 LYS 70 ALA 71 ILE 72 GLY 73 THR 74 VAL 75 LEU 76 VAL 77 GLY 78 PRO 79 THR 80 PRO 81 VAL 82 ASN 83 ILE 84 ILE 85 GLY 86 ARG 87 ASN 88 LEU 89 LEU 90 THR 91 GLN 92 ILE 93 GLY 94 ALA 95 THR 96 LEU 97 ASN 98 PHE 99

Ligands

Unit 5	ROC 101 DMS 102 ACT 1007 CL 1010 GOL 1012 NA 1015 ACT 1017 CL 1021
Unit 6	DMS 101 GOL 1001 CL 1003 CL 1005 NA 1014 ACT 1016 NA 1020
Unit 7	DMS 100 DMS 101 CL 1004 CL 1006 ACT 1008 GOL 1013
Unit 8	ROC 100 DMS 101