3NDR - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF TETRAMERIC PYRIDOXAL 4-DEHYDROGENASE FR MESORHIZOBIUM LOTI
• Keywords: PYRIDOXAL, TPLDH, 4-PYRIDOXOLACTONE, SHORT CHAIN DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3NDR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	A	247	1747	40
2	Protein	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	B	247	1747	40
3	Protein	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	C	247	1747	40
4	Protein	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	D	247	1747	40
5	Ligand	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	A	1	0	44
6	Ligand	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	B	1	0	44
7	Ligand	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	C	1	0	44
8	Ligand	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	D	1	0	44
9	Water			60	0	60
total				1052	6988	396

Proteins

Unit 1	THR 2 GLU 3 ARG 4 LEU 5 ALA 6 GLY 7 LYS 8 THR 9 ALA 10 LEU 11 VAL 12 THR 13 GLY 14 ALA 15 ALA 16 GLN 17 GLY 18 ILE 19 GLY 20 LYS 21 ALA 22 ILE 23 ALA 24 ALA 25 ARG 26 LEU 27 ALA 28 ALA 29 ASP 30 GLY 31 ALA 32 THR 33 VAL 34 ILE 35 VAL 36 SER 37 ASP 38 ILE 39 ASN 40 ALA 41 GLU 42 GLY 43 ALA 44 LYS 45 ALA 46 ALA 47 ALA 48 ALA 49 SER 50 ILE 51 GLY 52 LYS 53 LYS 54 ALA 55 ARG 56 ALA 57 ILE 58 ALA 59 ALA 60 ASP 61 ILE 62 SER 63 ASP 64 PRO 65 GLY 66 SER 67 VAL 68 LYS 69 ALA 70 LEU 71 PHE 72 ALA 73 GLU 74 ILE 75 GLN 76 ALA 77 LEU 78 THR 79 GLY 80 GLY 81 ILE 82 ASP 83 ILE 84 LEU 85 VAL 86 ASN 87 ASN 88 ALA 89 SER 90 ILE 91 VAL 92 PRO 93 PHE 94 VAL 95 ALA 96 TRP 97 ASP 98 ASP 99 VAL 100 ASP 101 LEU 102 ASP 103 HIS 104 TRP 105 ARG 106 LYS 107 ILE 108 ILE 109 ASP 110 VAL 111 ASN 112 LEU 113 THR 114 GLY 115 THR 116 PHE 117 ILE 118 VAL 119 THR 120 ARG 121 ALA 122 GLY 123 THR 124 ASP 125 GLN 126 MSE 127 ARG 128 ALA 129 ALA 130 GLY 131 LYS 132 ALA 133 GLY 134 ARG 135 VAL 136 ILE 137 SER 138 ILE 139 ALA 140 SER 141 ASN 142 THR 143 PHE 144 PHE 145 ALA 146 GLY 147 THR 148 PRO 149 ASN 150 MSE 151 ALA 152 ALA 153 TYR 154 VAL 155 ALA 156 ALA 157 LYS 158 GLY 159 GLY 160 VAL 161 ILE 162 GLY 163 PHE 164 THR 165 ARG 166 ALA 167 LEU 168 ALA 169 THR 170 GLU 171 LEU 172 GLY 173 LYS 174 TYR 175 ASN 176 ILE 177 THR 178 ALA 179 ASN 180 ALA 181 VAL 182 THR 183 PRO 184 GLY 185 LEU 186 ILE 187 GLU 188 SER 189 ASP 190 GLY 191 VAL 192 LYS 193 ALA 194 SER 195 PRO 196 HIS 197 ASN 198 GLU 199 ALA 200 PHE 201 GLY 202 PHE 203 VAL 204 GLU 205 MSE 206 LEU 207 GLN 208 ALA 209 MSE 210 LYS 211 GLY 212 LYS 213 GLY 214 GLN 215 PRO 216 GLU 217 HIS 218 ILE 219 ALA 220 ASP 221 VAL 222 VAL 223 SER 224 PHE 225 LEU 226 ALA 227 SER 228 ASP 229 ASP 230 ALA 231 ARG 232 TRP 233 ILE 234 THR 235 GLY 236 GLN 237 THR 238 LEU 239 ASN 240 VAL 241 ASP 242 ALA 243 GLY 244 MSE 245 VAL 246 ARG 247 HIS 248
Unit 2	THR 2 GLU 3 ARG 4 LEU 5 ALA 6 GLY 7 LYS 8 THR 9 ALA 10 LEU 11 VAL 12 THR 13 GLY 14 ALA 15 ALA 16 GLN 17 GLY 18 ILE 19 GLY 20 LYS 21 ALA 22 ILE 23 ALA 24 ALA 25 ARG 26 LEU 27 ALA 28 ALA 29 ASP 30 GLY 31 ALA 32 THR 33 VAL 34 ILE 35 VAL 36 SER 37 ASP 38 ILE 39 ASN 40 ALA 41 GLU 42 GLY 43 ALA 44 LYS 45 ALA 46 ALA 47 ALA 48 ALA 49 SER 50 ILE 51 GLY 52 LYS 53 LYS 54 ALA 55 ARG 56 ALA 57 ILE 58 ALA 59 ALA 60 ASP 61 ILE 62 SER 63 ASP 64 PRO 65 GLY 66 SER 67 VAL 68 LYS 69 ALA 70 LEU 71 PHE 72 ALA 73 GLU 74 ILE 75 GLN 76 ALA 77 LEU 78 THR 79 GLY 80 GLY 81 ILE 82 ASP 83 ILE 84 LEU 85 VAL 86 ASN 87 ASN 88 ALA 89 SER 90 ILE 91 VAL 92 PRO 93 PHE 94 VAL 95 ALA 96 TRP 97 ASP 98 ASP 99 VAL 100 ASP 101 LEU 102 ASP 103 HIS 104 TRP 105 ARG 106 LYS 107 ILE 108 ILE 109 ASP 110 VAL 111 ASN 112 LEU 113 THR 114 GLY 115 THR 116 PHE 117 ILE 118 VAL 119 THR 120 ARG 121 ALA 122 GLY 123 THR 124 ASP 125 GLN 126 MSE 127 ARG 128 ALA 129 ALA 130 GLY 131 LYS 132 ALA 133 GLY 134 ARG 135 VAL 136 ILE 137 SER 138 ILE 139 ALA 140 SER 141 ASN 142 THR 143 PHE 144 PHE 145 ALA 146 GLY 147 THR 148 PRO 149 ASN 150 MSE 151 ALA 152 ALA 153 TYR 154 VAL 155 ALA 156 ALA 157 LYS 158 GLY 159 GLY 160 VAL 161 ILE 162 GLY 163 PHE 164 THR 165 ARG 166 ALA 167 LEU 168 ALA 169 THR 170 GLU 171 LEU 172 GLY 173 LYS 174 TYR 175 ASN 176 ILE 177 THR 178 ALA 179 ASN 180 ALA 181 VAL 182 THR 183 PRO 184 GLY 185 LEU 186 ILE 187 GLU 188 SER 189 ASP 190 GLY 191 VAL 192 LYS 193 ALA 194 SER 195 PRO 196 HIS 197 ASN 198 GLU 199 ALA 200 PHE 201 GLY 202 PHE 203 VAL 204 GLU 205 MSE 206 LEU 207 GLN 208 ALA 209 MSE 210 LYS 211 GLY 212 LYS 213 GLY 214 GLN 215 PRO 216 GLU 217 HIS 218 ILE 219 ALA 220 ASP 221 VAL 222 VAL 223 SER 224 PHE 225 LEU 226 ALA 227 SER 228 ASP 229 ASP 230 ALA 231 ARG 232 TRP 233 ILE 234 THR 235 GLY 236 GLN 237 THR 238 LEU 239 ASN 240 VAL 241 ASP 242 ALA 243 GLY 244 MSE 245 VAL 246 ARG 247 HIS 248
Unit 3	THR 2 GLU 3 ARG 4 LEU 5 ALA 6 GLY 7 LYS 8 THR 9 ALA 10 LEU 11 VAL 12 THR 13 GLY 14 ALA 15 ALA 16 GLN 17 GLY 18 ILE 19 GLY 20 LYS 21 ALA 22 ILE 23 ALA 24 ALA 25 ARG 26 LEU 27 ALA 28 ALA 29 ASP 30 GLY 31 ALA 32 THR 33 VAL 34 ILE 35 VAL 36 SER 37 ASP 38 ILE 39 ASN 40 ALA 41 GLU 42 GLY 43 ALA 44 LYS 45 ALA 46 ALA 47 ALA 48 ALA 49 SER 50 ILE 51 GLY 52 LYS 53 LYS 54 ALA 55 ARG 56 ALA 57 ILE 58 ALA 59 ALA 60 ASP 61 ILE 62 SER 63 ASP 64 PRO 65 GLY 66 SER 67 VAL 68 LYS 69 ALA 70 LEU 71 PHE 72 ALA 73 GLU 74 ILE 75 GLN 76 ALA 77 LEU 78 THR 79 GLY 80 GLY 81 ILE 82 ASP 83 ILE 84 LEU 85 VAL 86 ASN 87 ASN 88 ALA 89 SER 90 ILE 91 VAL 92 PRO 93 PHE 94 VAL 95 ALA 96 TRP 97 ASP 98 ASP 99 VAL 100 ASP 101 LEU 102 ASP 103 HIS 104 TRP 105 ARG 106 LYS 107 ILE 108 ILE 109 ASP 110 VAL 111 ASN 112 LEU 113 THR 114 GLY 115 THR 116 PHE 117 ILE 118 VAL 119 THR 120 ARG 121 ALA 122 GLY 123 THR 124 ASP 125 GLN 126 MSE 127 ARG 128 ALA 129 ALA 130 GLY 131 LYS 132 ALA 133 GLY 134 ARG 135 VAL 136 ILE 137 SER 138 ILE 139 ALA 140 SER 141 ASN 142 THR 143 PHE 144 PHE 145 ALA 146 GLY 147 THR 148 PRO 149 ASN 150 MSE 151 ALA 152 ALA 153 TYR 154 VAL 155 ALA 156 ALA 157 LYS 158 GLY 159 GLY 160 VAL 161 ILE 162 GLY 163 PHE 164 THR 165 ARG 166 ALA 167 LEU 168 ALA 169 THR 170 GLU 171 LEU 172 GLY 173 LYS 174 TYR 175 ASN 176 ILE 177 THR 178 ALA 179 ASN 180 ALA 181 VAL 182 THR 183 PRO 184 GLY 185 LEU 186 ILE 187 GLU 188 SER 189 ASP 190 GLY 191 VAL 192 LYS 193 ALA 194 SER 195 PRO 196 HIS 197 ASN 198 GLU 199 ALA 200 PHE 201 GLY 202 PHE 203 VAL 204 GLU 205 MSE 206 LEU 207 GLN 208 ALA 209 MSE 210 LYS 211 GLY 212 LYS 213 GLY 214 GLN 215 PRO 216 GLU 217 HIS 218 ILE 219 ALA 220 ASP 221 VAL 222 VAL 223 SER 224 PHE 225 LEU 226 ALA 227 SER 228 ASP 229 ASP 230 ALA 231 ARG 232 TRP 233 ILE 234 THR 235 GLY 236 GLN 237 THR 238 LEU 239 ASN 240 VAL 241 ASP 242 ALA 243 GLY 244 MSE 245 VAL 246 ARG 247 HIS 248
Unit 4	THR 2 GLU 3 ARG 4 LEU 5 ALA 6 GLY 7 LYS 8 THR 9 ALA 10 LEU 11 VAL 12 THR 13 GLY 14 ALA 15 ALA 16 GLN 17 GLY 18 ILE 19 GLY 20 LYS 21 ALA 22 ILE 23 ALA 24 ALA 25 ARG 26 LEU 27 ALA 28 ALA 29 ASP 30 GLY 31 ALA 32 THR 33 VAL 34 ILE 35 VAL 36 SER 37 ASP 38 ILE 39 ASN 40 ALA 41 GLU 42 GLY 43 ALA 44 LYS 45 ALA 46 ALA 47 ALA 48 ALA 49 SER 50 ILE 51 GLY 52 LYS 53 LYS 54 ALA 55 ARG 56 ALA 57 ILE 58 ALA 59 ALA 60 ASP 61 ILE 62 SER 63 ASP 64 PRO 65 GLY 66 SER 67 VAL 68 LYS 69 ALA 70 LEU 71 PHE 72 ALA 73 GLU 74 ILE 75 GLN 76 ALA 77 LEU 78 THR 79 GLY 80 GLY 81 ILE 82 ASP 83 ILE 84 LEU 85 VAL 86 ASN 87 ASN 88 ALA 89 SER 90 ILE 91 VAL 92 PRO 93 PHE 94 VAL 95 ALA 96 TRP 97 ASP 98 ASP 99 VAL 100 ASP 101 LEU 102 ASP 103 HIS 104 TRP 105 ARG 106 LYS 107 ILE 108 ILE 109 ASP 110 VAL 111 ASN 112 LEU 113 THR 114 GLY 115 THR 116 PHE 117 ILE 118 VAL 119 THR 120 ARG 121 ALA 122 GLY 123 THR 124 ASP 125 GLN 126 MSE 127 ARG 128 ALA 129 ALA 130 GLY 131 LYS 132 ALA 133 GLY 134 ARG 135 VAL 136 ILE 137 SER 138 ILE 139 ALA 140 SER 141 ASN 142 THR 143 PHE 144 PHE 145 ALA 146 GLY 147 THR 148 PRO 149 ASN 150 MSE 151 ALA 152 ALA 153 TYR 154 VAL 155 ALA 156 ALA 157 LYS 158 GLY 159 GLY 160 VAL 161 ILE 162 GLY 163 PHE 164 THR 165 ARG 166 ALA 167 LEU 168 ALA 169 THR 170 GLU 171 LEU 172 GLY 173 LYS 174 TYR 175 ASN 176 ILE 177 THR 178 ALA 179 ASN 180 ALA 181 VAL 182 THR 183 PRO 184 GLY 185 LEU 186 ILE 187 GLU 188 SER 189 ASP 190 GLY 191 VAL 192 LYS 193 ALA 194 SER 195 PRO 196 HIS 197 ASN 198 GLU 199 ALA 200 PHE 201 GLY 202 PHE 203 VAL 204 GLU 205 MSE 206 LEU 207 GLN 208 ALA 209 MSE 210 LYS 211 GLY 212 LYS 213 GLY 214 GLN 215 PRO 216 GLU 217 HIS 218 ILE 219 ALA 220 ASP 221 VAL 222 VAL 223 SER 224 PHE 225 LEU 226 ALA 227 SER 228 ASP 229 ASP 230 ALA 231 ARG 232 TRP 233 ILE 234 THR 235 GLY 236 GLN 237 THR 238 LEU 239 ASN 240 VAL 241 ASP 242 ALA 243 GLY 244 MSE 245 VAL 246 ARG 247 HIS 248

Ligands

Unit 5	NAD 251
Unit 6	NAD 251
Unit 7	NAD 251
Unit 8	NAD 251