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Title | RESTRICTION ENDONUCLEASE IN COMPLEX WITH SUBSTRATE DNA | |
Keywords | ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, THAI, INTERCAL HYDROLASE-DNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3NDH | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | RESTRICTION ENDONUCLEASE THAI | A | 214 | 1769 | 0 |
2 | Protein | RESTRICTION ENDONUCLEASE THAI | B | 208 | 1709 | 0 |
3 | Other macromolecule | DNA (5'-D(*G*GP*TP*AP*CP*GP*CP*GP*AP*TP*G)-3') | C | 10 | 205 | 0 |
4 | Other macromolecule | DNA (5'-D(*C*CP*AP*TP*CP*GP*CP*GP*TP*AP*C)-3') | D | 10 | 199 | 0 |
5 | Ligand | RESTRICTION ENDONUCLEASE THAI | A | 6 | 0 | 26 |
6 | Ligand | RESTRICTION ENDONUCLEASE THAI | B | 5 | 0 | 23 |
7 | Ligand | DNA (5'-D(*G*GP*TP*AP*CP*GP*CP*GP*AP*TP*G)-3') | C | 2 | 0 | 8 |
8 | Water | 470 | 0 | 470 | ||
total | 925 | 3882 | 527 |
Unit 1 | HIS-4 HIS-3 HIS-2 HIS-1 GLU0 PHE1 ASP9 HIS10 LEU11 LYS12 ASP13 LEU14 PHE15 ARG16 ASP17 ARG18 LEU19 ILE20 ILE21 ASP22 LYS23 VAL24 GLN25 ARG26 ARG27 LEU28 PRO29 TYR30 MET31 PHE32 GLN33 LEU34 ALA35 GLU36 LEU37 GLU38 SER39 SER40 ARG41 ALA42 GLY43 LYS44 VAL45 GLY46 MET47 GLU48 VAL49 GLY50 SER51 LEU52 ARG53 GLU54 ARG55 ILE56 ILE57 SER58 SER59 LEU60 LEU61 ILE62 TYR63 LYS64 PHE65 GLY66 GLU67 LYS68 ASN69 VAL70 GLU71 THR72 ASP73 LEU74 PRO75 ILE76 THR77 GLU78 PRO79 GLU80 ILE81 ASP82 VAL83 LYS84 LEU85 PHE86 GLY87 SER88 PRO89 ILE90 SER91 ILE92 LYS93 THR94 ILE95 THR96 GLY97 LYS98 GLU99 PRO100 ALA101 GLY102 VAL103 LYS104 LEU105 ILE106 TRP107 THR108 VAL109 ASP110 ALA111 THR112 LYS113 ALA114 ARG115 GLN116 PHE117 LEU118 GLU119 THR120 TRP121 HIS122 PRO123 ARG124 PHE125 ASP126 LEU127 ILE128 LEU129 VAL130 HIS131 ILE132 ASN133 TRP134 SER135 SER136 LEU137 GLY138 GLY139 VAL140 TYR141 TYR142 ILE143 PRO144 ASP145 TYR146 VAL147 GLN148 GLN149 ARG150 ILE151 PHE152 ASP153 GLU154 ILE155 GLY156 LYS157 ASP158 LYS159 TYR160 ILE161 LYS162 LEU163 PRO164 LYS165 GLN166 GLY167 THR168 ASN169 PRO170 ARG171 GLY172 VAL173 GLU174 ILE175 SER176 ASN177 GLU178 ALA179 LEU180 LYS181 GLU182 ILE183 MET184 THR185 ASP186 GLU187 GLU188 THR189 MET190 SER191 ILE192 LYS193 ILE194 GLU195 TRP196 LYS197 LYS198 THR199 ASN200 VAL201 GLN202 TYR203 ASN204 ALA205 PHE206 LYS207 ARG208 TRP209 VAL210 ASP211 LEU212 TRP213 SER214 GLU215 GLY216 |
Unit 2 | ASP9 HIS10 LEU11 LYS12 ASP13 LEU14 PHE15 ARG16 ASP17 ARG18 LEU19 ILE20 ILE21 ASP22 LYS23 VAL24 GLN25 ARG26 ARG27 LEU28 PRO29 TYR30 MET31 PHE32 GLN33 LEU34 ALA35 GLU36 LEU37 GLU38 SER39 SER40 ARG41 ALA42 GLY43 LYS44 VAL45 GLY46 MET47 GLU48 VAL49 GLY50 SER51 LEU52 ARG53 GLU54 ARG55 ILE56 ILE57 SER58 SER59 LEU60 LEU61 ILE62 TYR63 LYS64 PHE65 GLY66 GLU67 LYS68 ASN69 VAL70 GLU71 THR72 ASP73 LEU74 PRO75 ILE76 THR77 GLU78 PRO79 GLU80 ILE81 ASP82 VAL83 LYS84 LEU85 PHE86 GLY87 SER88 PRO89 ILE90 SER91 ILE92 LYS93 THR94 ILE95 THR96 GLY97 LYS98 GLU99 PRO100 ALA101 GLY102 VAL103 LYS104 LEU105 ILE106 TRP107 THR108 VAL109 ASP110 ALA111 THR112 LYS113 ALA114 ARG115 GLN116 PHE117 LEU118 GLU119 THR120 TRP121 HIS122 PRO123 ARG124 PHE125 ASP126 LEU127 ILE128 LEU129 VAL130 HIS131 ILE132 ASN133 TRP134 SER135 SER136 LEU137 GLY138 GLY139 VAL140 TYR141 TYR142 ILE143 PRO144 ASP145 TYR146 VAL147 GLN148 GLN149 ARG150 ILE151 PHE152 ASP153 GLU154 ILE155 GLY156 LYS157 ASP158 LYS159 TYR160 ILE161 LYS162 LEU163 PRO164 LYS165 GLN166 GLY167 THR168 ASN169 PRO170 ARG171 GLY172 VAL173 GLU174 ILE175 SER176 ASN177 GLU178 ALA179 LEU180 LYS181 GLU182 ILE183 MET184 THR185 ASP186 GLU187 GLU188 THR189 MET190 SER191 ILE192 LYS193 ILE194 GLU195 TRP196 LYS197 LYS198 THR199 ASN200 VAL201 GLN202 TYR203 ASN204 ALA205 PHE206 LYS207 ARG208 TRP209 VAL210 ASP211 LEU212 TRP213 SER214 GLU215 GLY216 |
Unit 3 | DG2 DT3 DA4 DC5 DG6 DC7 DG8 DA9 DT10 DG11 |
Unit 4 | DC2 DA3 DT4 DC5 DG6 DC7 DG8 DT9 DA10 DC11 |
Unit 5 | NA217 CL218 PGE219 ACT220 SO4221 SO4222 |
Unit 6 | NA217 CL218 PGE219 PGE220 ACT221 |
Unit 7 | ACT12 ACT13 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |