Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF YAGE, A PROPHAGE PROTEIN BELONGING TO T DIHYDRODIPICOLINIC ACID SYNTHASE FAMILY FROM E. COLI K12 IN WITH PYRUVATE
Keywords TIM BARREL, PROTEIN-LIGAND COMPLEX, ALDOLASE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3N2X     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UNCHARACTERIZED PROTEIN YAGE  A 298 2249 14
2  Protein   UNCHARACTERIZED PROTEIN YAGE  B 298 2251 14
3  Protein   UNCHARACTERIZED PROTEIN YAGE  C 298 2245 14
4  Protein   UNCHARACTERIZED PROTEIN YAGE  D 298 2254 14
5  Ligand   UNCHARACTERIZED PROTEIN YAGE  A 1 0 4
6  Ligand   UNCHARACTERIZED PROTEIN YAGE  B 1 0 4
7  Ligand   UNCHARACTERIZED PROTEIN YAGE  C 1 0 4
8  Ligand   UNCHARACTERIZED PROTEIN YAGE  D 1 0 4
9 Water     495 0 495
total       1691 8999 567
Proteins
Unit 1 ALA12 LEU13 PHE14 THR15 GLY16 ILE17 ILE18 PRO19 PRO20 VAL21 SER22 THR23 ILE24 PHE25 THR26 ALA27 ASP28 GLY29 GLN30 LEU31 ASP32 LYS33 PRO34 GLY35 THR36 ALA37 ALA38 LEU39 ILE40 ASP41 ASP42 LEU43 ILE44 LYS45 ALA46 GLY47 VAL48 ASP49 GLY50 LEU51 PHE52 PHE53 LEU54 GLY55 SER56 GLY57 GLY58 GLU59 PHE60 SER61 GLN62 LEU63 GLY64 ALA65 GLU66 GLU67 ARG68 LYS69 ALA70 ILE71 ALA72 ARG73 PHE74 ALA75 ILE76 ASP77 HIS78 VAL79 ASP80 ARG81 ARG82 VAL83 PRO84 VAL85 LEU86 ILE87 GLY88 THR89 GLY90 GLY91 THR92 ASN93 ALA94 ARG95 GLU96 THR97 ILE98 GLU99 LEU100 SER101 GLN102 HIS103 ALA104 GLN105 GLN106 ALA107 GLY108 ALA109 ASP110 GLY111 ILE112 VAL113 VAL114 ILE115 ASN116 PRO117 TYR118 TYR119 TRP120 LYS121 VAL122 SER123 GLU124 ALA125 ASN126 LEU127 ILE128 ARG129 TYR130 PHE131 GLU132 GLN133 VAL134 ALA135 ASP136 SER137 VAL138 THR139 LEU140 PRO141 VAL142 MET143 LEU144 TYR145 ASN146 PHE147 PRO148 ALA149 LEU150 THR151 GLY152 GLN153 ASP154 LEU155 THR156 PRO157 ALA158 LEU159 VAL160 LYS161 THR162 LEU163 ALA164 ASP165 SER166 ARG167 SER168 ASN169 ILE170 ILE171 GLY172 ILE173 KPI174 ASP175 THR176 ILE177 ASP178 SER179 VAL180 ALA181 HIS182 LEU183 ARG184 SER185 MET186 ILE187 HIS188 THR189 VAL190 LYS191 GLY192 ALA193 HIS194 PRO195 HIS196 PHE197 THR198 VAL199 LEU200 CYS201 GLY202 TYR203 ASP204 ASP205 HIS206 LEU207 PHE208 ASN209 THR210 LEU211 LEU212 LEU213 GLY214 GLY215 ASP216 GLY217 ALA218 ILE219 SER220 ALA221 SER222 GLY223 ASN224 PHE225 ALA226 PRO227 GLN228 VAL229 SER230 VAL231 ASN232 LEU233 LEU234 LYS235 ALA236 TRP237 ARG238 ASP239 GLY240 ASP241 VAL242 ALA243 LYS244 ALA245 ALA246 GLY247 TYR248 HIS249 GLN250 THR251 LEU252 LEU253 GLN254 ILE255 PRO256 GLN257 MET258 TYR259 GLN260 LEU261 ASP262 THR263 PRO264 PHE265 VAL266 ASN267 VAL268 ILE269 LYS270 GLU271 ALA272 ILE273 VAL274 LEU275 CYS276 GLY277 ARG278 PRO279 VAL280 SER281 THR282 HIS283 VAL284 LEU285 PRO286 PRO287 ALA288 SER289 PRO290 LEU291 ASP292 GLU293 PRO294 ARG295 LYS296 ALA297 GLN298 LEU299 LYS300 THR301 LEU302 LEU303 GLN304 GLN305 LEU306 LYS307 LEU308 CYS309
Unit 2 ALA12 LEU13 PHE14 THR15 GLY16 ILE17 ILE18 PRO19 PRO20 VAL21 SER22 THR23 ILE24 PHE25 THR26 ALA27 ASP28 GLY29 GLN30 LEU31 ASP32 LYS33 PRO34 GLY35 THR36 ALA37 ALA38 LEU39 ILE40 ASP41 ASP42 LEU43 ILE44 LYS45 ALA46 GLY47 VAL48 ASP49 GLY50 LEU51 PHE52 PHE53 LEU54 GLY55 SER56 GLY57 GLY58 GLU59 PHE60 SER61 GLN62 LEU63 GLY64 ALA65 GLU66 GLU67 ARG68 LYS69 ALA70 ILE71 ALA72 ARG73 PHE74 ALA75 ILE76 ASP77 HIS78 VAL79 ASP80 ARG81 ARG82 VAL83 PRO84 VAL85 LEU86 ILE87 GLY88 THR89 GLY90 GLY91 THR92 ASN93 ALA94 ARG95 GLU96 THR97 ILE98 GLU99 LEU100 SER101 GLN102 HIS103 ALA104 GLN105 GLN106 ALA107 GLY108 ALA109 ASP110 GLY111 ILE112 VAL113 VAL114 ILE115 ASN116 PRO117 TYR118 TYR119 TRP120 LYS121 VAL122 SER123 GLU124 ALA125 ASN126 LEU127 ILE128 ARG129 TYR130 PHE131 GLU132 GLN133 VAL134 ALA135 ASP136 SER137 VAL138 THR139 LEU140 PRO141 VAL142 MET143 LEU144 TYR145 ASN146 PHE147 PRO148 ALA149 LEU150 THR151 GLY152 GLN153 ASP154 LEU155 THR156 PRO157 ALA158 LEU159 VAL160 LYS161 THR162 LEU163 ALA164 ASP165 SER166 ARG167 SER168 ASN169 ILE170 ILE171 GLY172 ILE173 KPI174 ASP175 THR176 ILE177 ASP178 SER179 VAL180 ALA181 HIS182 LEU183 ARG184 SER185 MET186 ILE187 HIS188 THR189 VAL190 LYS191 GLY192 ALA193 HIS194 PRO195 HIS196 PHE197 THR198 VAL199 LEU200 CYS201 GLY202 TYR203 ASP204 ASP205 HIS206 LEU207 PHE208 ASN209 THR210 LEU211 LEU212 LEU213 GLY214 GLY215 ASP216 GLY217 ALA218 ILE219 SER220 ALA221 SER222 GLY223 ASN224 PHE225 ALA226 PRO227 GLN228 VAL229 SER230 VAL231 ASN232 LEU233 LEU234 LYS235 ALA236 TRP237 ARG238 ASP239 GLY240 ASP241 VAL242 ALA243 LYS244 ALA245 ALA246 GLY247 TYR248 HIS249 GLN250 THR251 LEU252 LEU253 GLN254 ILE255 PRO256 GLN257 MET258 TYR259 GLN260 LEU261 ASP262 THR263 PRO264 PHE265 VAL266 ASN267 VAL268 ILE269 LYS270 GLU271 ALA272 ILE273 VAL274 LEU275 CYS276 GLY277 ARG278 PRO279 VAL280 SER281 THR282 HIS283 VAL284 LEU285 PRO286 PRO287 ALA288 SER289 PRO290 LEU291 ASP292 GLU293 PRO294 ARG295 LYS296 ALA297 GLN298 LEU299 LYS300 THR301 LEU302 LEU303 GLN304 GLN305 LEU306 LYS307 LEU308 CYS309
Unit 3 ALA12 LEU13 PHE14 THR15 GLY16 ILE17 ILE18 PRO19 PRO20 VAL21 SER22 THR23 ILE24 PHE25 THR26 ALA27 ASP28 GLY29 GLN30 LEU31 ASP32 LYS33 PRO34 GLY35 THR36 ALA37 ALA38 LEU39 ILE40 ASP41 ASP42 LEU43 ILE44 LYS45 ALA46 GLY47 VAL48 ASP49 GLY50 LEU51 PHE52 PHE53 LEU54 GLY55 SER56 GLY57 GLY58 GLU59 PHE60 SER61 GLN62 LEU63 GLY64 ALA65 GLU66 GLU67 ARG68 LYS69 ALA70 ILE71 ALA72 ARG73 PHE74 ALA75 ILE76 ASP77 HIS78 VAL79 ASP80 ARG81 ARG82 VAL83 PRO84 VAL85 LEU86 ILE87 GLY88 THR89 GLY90 GLY91 THR92 ASN93 ALA94 ARG95 GLU96 THR97 ILE98 GLU99 LEU100 SER101 GLN102 HIS103 ALA104 GLN105 GLN106 ALA107 GLY108 ALA109 ASP110 GLY111 ILE112 VAL113 VAL114 ILE115 ASN116 PRO117 TYR118 TYR119 TRP120 LYS121 VAL122 SER123 GLU124 ALA125 ASN126 LEU127 ILE128 ARG129 TYR130 PHE131 GLU132 GLN133 VAL134 ALA135 ASP136 SER137 VAL138 THR139 LEU140 PRO141 VAL142 MET143 LEU144 TYR145 ASN146 PHE147 PRO148 ALA149 LEU150 THR151 GLY152 GLN153 ASP154 LEU155 THR156 PRO157 ALA158 LEU159 VAL160 LYS161 THR162 LEU163 ALA164 ASP165 SER166 ARG167 SER168 ASN169 ILE170 ILE171 GLY172 ILE173 KPI174 ASP175 THR176 ILE177 ASP178 SER179 VAL180 ALA181 HIS182 LEU183 ARG184 SER185 MET186 ILE187 HIS188 THR189 VAL190 LYS191 GLY192 ALA193 HIS194 PRO195 HIS196 PHE197 THR198 VAL199 LEU200 CYS201 GLY202 TYR203 ASP204 ASP205 HIS206 LEU207 PHE208 ASN209 THR210 LEU211 LEU212 LEU213 GLY214 GLY215 ASP216 GLY217 ALA218 ILE219 SER220 ALA221 SER222 GLY223 ASN224 PHE225 ALA226 PRO227 GLN228 VAL229 SER230 VAL231 ASN232 LEU233 LEU234 LYS235 ALA236 TRP237 ARG238 ASP239 GLY240 ASP241 VAL242 ALA243 LYS244 ALA245 ALA246 GLY247 TYR248 HIS249 GLN250 THR251 LEU252 LEU253 GLN254 ILE255 PRO256 GLN257 MET258 TYR259 GLN260 LEU261 ASP262 THR263 PRO264 PHE265 VAL266 ASN267 VAL268 ILE269 LYS270 GLU271 ALA272 ILE273 VAL274 LEU275 CYS276 GLY277 ARG278 PRO279 VAL280 SER281 THR282 HIS283 VAL284 LEU285 PRO286 PRO287 ALA288 SER289 PRO290 LEU291 ASP292 GLU293 PRO294 ARG295 LYS296 ALA297 GLN298 LEU299 LYS300 THR301 LEU302 LEU303 GLN304 GLN305 LEU306 LYS307 LEU308 CYS309
Unit 4 ALA12 LEU13 PHE14 THR15 GLY16 ILE17 ILE18 PRO19 PRO20 VAL21 SER22 THR23 ILE24 PHE25 THR26 ALA27 ASP28 GLY29 GLN30 LEU31 ASP32 LYS33 PRO34 GLY35 THR36 ALA37 ALA38 LEU39 ILE40 ASP41 ASP42 LEU43 ILE44 LYS45 ALA46 GLY47 VAL48 ASP49 GLY50 LEU51 PHE52 PHE53 LEU54 GLY55 SER56 GLY57 GLY58 GLU59 PHE60 SER61 GLN62 LEU63 GLY64 ALA65 GLU66 GLU67 ARG68 LYS69 ALA70 ILE71 ALA72 ARG73 PHE74 ALA75 ILE76 ASP77 HIS78 VAL79 ASP80 ARG81 ARG82 VAL83 PRO84 VAL85 LEU86 ILE87 GLY88 THR89 GLY90 GLY91 THR92 ASN93 ALA94 ARG95 GLU96 THR97 ILE98 GLU99 LEU100 SER101 GLN102 HIS103 ALA104 GLN105 GLN106 ALA107 GLY108 ALA109 ASP110 GLY111 ILE112 VAL113 VAL114 ILE115 ASN116 PRO117 TYR118 TYR119 TRP120 LYS121 VAL122 SER123 GLU124 ALA125 ASN126 LEU127 ILE128 ARG129 TYR130 PHE131 GLU132 GLN133 VAL134 ALA135 ASP136 SER137 VAL138 THR139 LEU140 PRO141 VAL142 MET143 LEU144 TYR145 ASN146 PHE147 PRO148 ALA149 LEU150 THR151 GLY152 GLN153 ASP154 LEU155 THR156 PRO157 ALA158 LEU159 VAL160 LYS161 THR162 LEU163 ALA164 ASP165 SER166 ARG167 SER168 ASN169 ILE170 ILE171 GLY172 ILE173 KPI174 ASP175 THR176 ILE177 ASP178 SER179 VAL180 ALA181 HIS182 LEU183 ARG184 SER185 MET186 ILE187 HIS188 THR189 VAL190 LYS191 GLY192 ALA193 HIS194 PRO195 HIS196 PHE197 THR198 VAL199 LEU200 CYS201 GLY202 TYR203 ASP204 ASP205 HIS206 LEU207 PHE208 ASN209 THR210 LEU211 LEU212 LEU213 GLY214 GLY215 ASP216 GLY217 ALA218 ILE219 SER220 ALA221 SER222 GLY223 ASN224 PHE225 ALA226 PRO227 GLN228 VAL229 SER230 VAL231 ASN232 LEU233 LEU234 LYS235 ALA236 TRP237 ARG238 ASP239 GLY240 ASP241 VAL242 ALA243 LYS244 ALA245 ALA246 GLY247 TYR248 HIS249 GLN250 THR251 LEU252 LEU253 GLN254 ILE255 PRO256 GLN257 MET258 TYR259 GLN260 LEU261 ASP262 THR263 PRO264 PHE265 VAL266 ASN267 VAL268 ILE269 LYS270 GLU271 ALA272 ILE273 VAL274 LEU275 CYS276 GLY277 ARG278 PRO279 VAL280 SER281 THR282 HIS283 VAL284 LEU285 PRO286 PRO287 ALA288 SER289 PRO290 LEU291 ASP292 GLU293 PRO294 ARG295 LYS296 ALA297 GLN298 LEU299 LYS300 THR301 LEU302 LEU303 GLN304 GLN305 LEU306 LYS307 LEU308 CYS309
Ligands
Unit 5 EDO1
Unit 6 EDO2
Unit 7 EDO3
Unit 8 EDO4
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany