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Sequence, Chains, Asymmetric and Biological Units

Title NATIVE STRUCTURE OF A C-DI-GMP RIBOSWITCH FROM V. CHOLERAE
Keywords RNA, RIBOSWITCH, C-DI-GMP, RNA BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  P 87 712 0
2  RNA    R 92 1952 32
3  Ligand   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  P 1 0 1
4  Ligand   C-DI-GMP RIBOSWITCH  R 5 0 50
5 Water     169 0 169
total       354 2664 252

Proteins
Unit 1 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93

Nucleic acids
Unit 2 GTP8 G9 U10 C11 A12 C13 G14 C15 A16 C17 A18 G19 G20 G21 C22 A23 A24 A25 C26 C27 A28 U29 U30 C31 G32 A33 A34 A35 G36 A37 G38 U39 G40 G41 G42 A43 C44 G45 C46 A47 A48 A49 G50 C51 C52 U53 C54 C55 G56 G57 C58 C59 U60 A61 A62 A63 C64 C65 G75 G76 U77 A78 G79 G80 U81 A82 G83 C84 G85 G86 G87 G88 U89 U90 A91 C92 C93 G94 A95 U96 G97 G98 A660 U661 U662 G663 C664 A665 C666 U667 C668 C669

Ligands
Unit 3 MG99
Unit 4 C2E1 MG2 MG4 MG5 MG670

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany