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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE INTERACTION BETWEE NUCLEOPORIN NUP98 AND THE MRNA EXPORT FACTOR RAE1
Keywords NUCLEAR PORE COMPLEX, MRNA EXPORT, NUCLEAR PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3MMY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MRNA EXPORT FACTOR  A 354 2784 0
2  Protein   NUCLEAR PORE COMPLEX PROTEIN NUP98  B 51 405 0
3  Protein   MRNA EXPORT FACTOR  C 355 2792 0
4  Protein   NUCLEAR PORE COMPLEX PROTEIN NUP98  D 51 405 0
5  Protein   MRNA EXPORT FACTOR  E 354 2784 0
6  Protein   NUCLEAR PORE COMPLEX PROTEIN NUP98  F 51 405 0
7  Protein   MRNA EXPORT FACTOR  G 355 2792 0
8  Protein   NUCLEAR PORE COMPLEX PROTEIN NUP98  H 50 398 0
9  Ligand   MRNA EXPORT FACTOR  A 1 0 12
10  Ligand   MRNA EXPORT FACTOR  C 1 0 12
11  Ligand   MRNA EXPORT FACTOR  E 1 0 12
12  Ligand   MRNA EXPORT FACTOR  G 1 0 12
13 Water     798 0 798
total       2423 12765 846
Proteins
Unit 1 PHE4 GLY5 THR6 THR7 SER8 GLY9 PHE10 GLY11 THR12 SER13 GLY14 THR15 SER16 MET17 PHE18 THR23 ASP24 ASN25 HIS26 ASN27 PRO28 MET29 LYS30 ASP31 ILE32 GLU33 VAL34 THR35 SER36 SER37 PRO38 ASP39 ASP40 SER41 ILE42 GLY43 CYS44 LEU45 SER46 PHE47 SER48 PRO49 PRO50 THR51 LEU52 PRO53 GLY54 ASN55 PHE56 LEU57 ILE58 ALA59 GLY60 SER61 TRP62 ALA63 ASN64 ASP65 VAL66 ARG67 CYS68 TRP69 GLU70 VAL71 GLN72 ASP73 SER74 GLY75 GLN76 THR77 ILE78 PRO79 LYS80 ALA81 GLN82 GLN83 MET84 HIS85 THR86 GLY87 PRO88 VAL89 LEU90 ASP91 VAL92 CYS93 TRP94 SER95 ASP96 ASP97 GLY98 SER99 LYS100 VAL101 PHE102 THR103 ALA104 SER105 CYS106 ASP107 LYS108 THR109 ALA110 LYS111 MET112 TRP113 ASP114 LEU115 SER116 SER117 ASN118 GLN119 ALA120 ILE121 GLN122 ILE123 ALA124 GLN125 HIS126 ASP127 ALA128 PRO129 VAL130 LYS131 THR132 ILE133 HIS134 TRP135 ILE136 LYS137 ALA138 PRO139 ASN140 TYR141 SER142 CYS143 VAL144 MET145 THR146 GLY147 SER148 TRP149 ASP150 LYS151 THR152 LEU153 LYS154 PHE155 TRP156 ASP157 THR158 ARG159 SER160 SER161 ASN162 PRO163 MET164 MET165 VAL166 LEU167 GLN168 LEU169 PRO170 GLU171 ARG172 CYS173 TYR174 CYS175 ALA176 ASP177 VAL178 ILE179 TYR180 PRO181 MET182 ALA183 VAL184 VAL185 ALA186 THR187 ALA188 GLU189 ARG190 GLY191 LEU192 ILE193 VAL194 TYR195 GLN196 LEU197 GLU198 ASN199 GLN200 PRO201 SER202 GLU203 PHE204 ARG205 ARG206 ILE207 GLU208 SER209 PRO210 LEU211 LYS212 HIS213 GLN214 HIS215 ARG216 CYS217 VAL218 ALA219 ILE220 PHE221 LYS222 ASP223 LYS224 GLN225 ASN226 LYS227 PRO228 THR229 GLY230 PHE231 ALA232 LEU233 GLY234 SER235 ILE236 GLU237 GLY238 ARG239 VAL240 ALA241 ILE242 HIS243 TYR244 ILE245 ASN246 PRO247 PRO248 ASN249 PRO250 ALA251 LYS252 ASP253 ASN254 PHE255 THR256 PHE257 LYS258 CYS259 HIS260 ARG261 SER262 ASN263 SER268 ALA269 PRO270 GLN271 ASP272 ILE273 TYR274 ALA275 VAL276 ASN277 GLY278 ILE279 ALA280 PHE281 HIS282 PRO283 VAL284 HIS285 GLY286 THR287 LEU288 ALA289 THR290 VAL291 GLY292 SER293 ASP294 GLY295 ARG296 PHE297 SER298 PHE299 TRP300 ASP301 LYS302 ASP303 ALA304 ARG305 THR306 LYS307 LEU308 LYS309 THR310 SER311 GLU312 GLN313 LEU314 ASP315 GLN316 PRO317 ILE318 SER319 ALA320 CYS321 CYS322 PHE323 ASN324 HIS325 ASN326 GLY327 ASN328 ILE329 PHE330 ALA331 TYR332 ALA333 SER334 SER335 TYR336 ASP337 TRP338 SER339 LYS340 GLY341 HIS342 GLU343 PHE344 TYR345 ASN346 PRO347 GLN348 LYS349 LYS350 ASN351 TYR352 ILE353 PHE354 LEU355 ARG356 ASN357 ALA358 ALA359 GLU360 GLU361 LEU362 LYS363 PRO364 ARG365
Unit 2 THR158 GLY159 THR160 THR161 ILE162 LYS163 PHE164 ASN165 PRO166 PRO167 THR168 GLY169 THR170 ASP171 THR172 MET173 SER179 THR180 ASN181 ILE182 SER183 THR184 LYS185 HIS186 GLN187 CYS188 ILE189 THR190 ALA191 MET192 LYS193 GLU194 TYR195 GLU196 SER197 LYS198 SER199 LEU200 GLU201 GLU202 LEU203 ARG204 LEU205 GLU206 ASP207 TYR208 GLN209 ALA210 ASN211 ARG212 LYS213
Unit 3 PHE4 SER8 GLY9 PHE10 GLY11 THR12 SER13 GLY14 THR15 SER16 MET17 PHE18 THR23 ASP24 ASN25 HIS26 ASN27 PRO28 MET29 LYS30 ASP31 ILE32 GLU33 VAL34 THR35 SER36 SER37 PRO38 ASP39 ASP40 SER41 ILE42 GLY43 CYS44 LEU45 SER46 PHE47 SER48 PRO49 PRO50 THR51 LEU52 PRO53 GLY54 ASN55 PHE56 LEU57 ILE58 ALA59 GLY60 SER61 TRP62 ALA63 ASN64 ASP65 VAL66 ARG67 CYS68 TRP69 GLU70 VAL71 GLN72 ASP73 SER74 GLY75 GLN76 THR77 ILE78 PRO79 LYS80 ALA81 GLN82 GLN83 MET84 HIS85 THR86 GLY87 PRO88 VAL89 LEU90 ASP91 VAL92 CYS93 TRP94 SER95 ASP96 ASP97 GLY98 SER99 LYS100 VAL101 PHE102 THR103 ALA104 SER105 CYS106 ASP107 LYS108 THR109 ALA110 LYS111 MET112 TRP113 ASP114 LEU115 SER116 SER117 ASN118 GLN119 ALA120 ILE121 GLN122 ILE123 ALA124 GLN125 HIS126 ASP127 ALA128 PRO129 VAL130 LYS131 THR132 ILE133 HIS134 TRP135 ILE136 LYS137 ALA138 PRO139 ASN140 TYR141 SER142 CYS143 VAL144 MET145 THR146 GLY147 SER148 TRP149 ASP150 LYS151 THR152 LEU153 LYS154 PHE155 TRP156 ASP157 THR158 ARG159 SER160 SER161 ASN162 PRO163 MET164 MET165 VAL166 LEU167 GLN168 LEU169 PRO170 GLU171 ARG172 CYS173 TYR174 CYS175 ALA176 ASP177 VAL178 ILE179 TYR180 PRO181 MET182 ALA183 VAL184 VAL185 ALA186 THR187 ALA188 GLU189 ARG190 GLY191 LEU192 ILE193 VAL194 TYR195 GLN196 LEU197 GLU198 ASN199 GLN200 PRO201 SER202 GLU203 PHE204 ARG205 ARG206 ILE207 GLU208 SER209 PRO210 LEU211 LYS212 HIS213 GLN214 HIS215 ARG216 CYS217 VAL218 ALA219 ILE220 PHE221 LYS222 ASP223 LYS224 GLN225 ASN226 LYS227 PRO228 THR229 GLY230 PHE231 ALA232 LEU233 GLY234 SER235 ILE236 GLU237 GLY238 ARG239 VAL240 ALA241 ILE242 HIS243 TYR244 ILE245 ASN246 PRO247 PRO248 ASN249 PRO250 ALA251 LYS252 ASP253 ASN254 PHE255 THR256 PHE257 LYS258 CYS259 HIS260 ARG261 SER262 ASN263 GLY264 THR265 ASN266 THR267 SER268 ALA269 PRO270 GLN271 ASP272 ILE273 TYR274 ALA275 VAL276 ASN277 GLY278 ILE279 ALA280 PHE281 HIS282 PRO283 VAL284 HIS285 GLY286 THR287 LEU288 ALA289 THR290 VAL291 GLY292 SER293 ASP294 GLY295 ARG296 PHE297 SER298 PHE299 TRP300 ASP301 LYS302 ASP303 ALA304 ARG305 THR306 LYS307 LEU308 LYS309 THR310 SER311 GLU312 GLN313 LEU314 ASP315 GLN316 PRO317 ILE318 SER319 ALA320 CYS321 CYS322 PHE323 ASN324 HIS325 ASN326 GLY327 ASN328 ILE329 PHE330 ALA331 TYR332 ALA333 SER334 SER335 TYR336 ASP337 TRP338 SER339 LYS340 GLY341 HIS342 GLU343 PHE344 TYR345 ASN346 PRO347 GLN348 LYS349 LYS350 ASN351 TYR352 ILE353 PHE354 LEU355 ARG356 ASN357 ALA358 ALA359 GLU360 GLU361 LEU362 LYS363 PRO364 ARG365
Unit 4 THR158 GLY159 THR160 THR161 ILE162 LYS163 PHE164 ASN165 PRO166 PRO167 THR168 GLY169 THR170 ASP171 THR172 MET173 SER179 THR180 ASN181 ILE182 SER183 THR184 LYS185 HIS186 GLN187 CYS188 ILE189 THR190 ALA191 MET192 LYS193 GLU194 TYR195 GLU196 SER197 LYS198 SER199 LEU200 GLU201 GLU202 LEU203 ARG204 LEU205 GLU206 ASP207 TYR208 GLN209 ALA210 ASN211 ARG212 LYS213
Unit 5 PHE4 GLY5 THR6 THR7 SER8 GLY9 PHE10 GLY11 THR12 SER13 GLY14 THR15 SER16 MET17 PHE18 THR23 ASP24 ASN25 HIS26 ASN27 PRO28 MET29 LYS30 ASP31 ILE32 GLU33 VAL34 THR35 SER36 SER37 PRO38 ASP39 ASP40 SER41 ILE42 GLY43 CYS44 LEU45 SER46 PHE47 SER48 PRO49 PRO50 THR51 LEU52 PRO53 GLY54 ASN55 PHE56 LEU57 ILE58 ALA59 GLY60 SER61 TRP62 ALA63 ASN64 ASP65 VAL66 ARG67 CYS68 TRP69 GLU70 VAL71 GLN72 ASP73 SER74 GLY75 GLN76 THR77 ILE78 PRO79 LYS80 ALA81 GLN82 GLN83 MET84 HIS85 THR86 GLY87 PRO88 VAL89 LEU90 ASP91 VAL92 CYS93 TRP94 SER95 ASP96 ASP97 GLY98 SER99 LYS100 VAL101 PHE102 THR103 ALA104 SER105 CYS106 ASP107 LYS108 THR109 ALA110 LYS111 MET112 TRP113 ASP114 LEU115 SER116 SER117 ASN118 GLN119 ALA120 ILE121 GLN122 ILE123 ALA124 GLN125 HIS126 ASP127 ALA128 PRO129 VAL130 LYS131 THR132 ILE133 HIS134 TRP135 ILE136 LYS137 ALA138 PRO139 ASN140 TYR141 SER142 CYS143 VAL144 MET145 THR146 GLY147 SER148 TRP149 ASP150 LYS151 THR152 LEU153 LYS154 PHE155 TRP156 ASP157 THR158 ARG159 SER160 SER161 ASN162 PRO163 MET164 MET165 VAL166 LEU167 GLN168 LEU169 PRO170 GLU171 ARG172 CYS173 TYR174 CYS175 ALA176 ASP177 VAL178 ILE179 TYR180 PRO181 MET182 ALA183 VAL184 VAL185 ALA186 THR187 ALA188 GLU189 ARG190 GLY191 LEU192 ILE193 VAL194 TYR195 GLN196 LEU197 GLU198 ASN199 GLN200 PRO201 SER202 GLU203 PHE204 ARG205 ARG206 ILE207 GLU208 SER209 PRO210 LEU211 LYS212 HIS213 GLN214 HIS215 ARG216 CYS217 VAL218 ALA219 ILE220 PHE221 LYS222 ASP223 LYS224 GLN225 ASN226 LYS227 PRO228 THR229 GLY230 PHE231 ALA232 LEU233 GLY234 SER235 ILE236 GLU237 GLY238 ARG239 VAL240 ALA241 ILE242 HIS243 TYR244 ILE245 ASN246 PRO247 PRO248 ASN249 PRO250 ALA251 LYS252 ASP253 ASN254 PHE255 THR256 PHE257 LYS258 CYS259 HIS260 ARG261 SER262 ASN263 SER268 ALA269 PRO270 GLN271 ASP272 ILE273 TYR274 ALA275 VAL276 ASN277 GLY278 ILE279 ALA280 PHE281 HIS282 PRO283 VAL284 HIS285 GLY286 THR287 LEU288 ALA289 THR290 VAL291 GLY292 SER293 ASP294 GLY295 ARG296 PHE297 SER298 PHE299 TRP300 ASP301 LYS302 ASP303 ALA304 ARG305 THR306 LYS307 LEU308 LYS309 THR310 SER311 GLU312 GLN313 LEU314 ASP315 GLN316 PRO317 ILE318 SER319 ALA320 CYS321 CYS322 PHE323 ASN324 HIS325 ASN326 GLY327 ASN328 ILE329 PHE330 ALA331 TYR332 ALA333 SER334 SER335 TYR336 ASP337 TRP338 SER339 LYS340 GLY341 HIS342 GLU343 PHE344 TYR345 ASN346 PRO347 GLN348 LYS349 LYS350 ASN351 TYR352 ILE353 PHE354 LEU355 ARG356 ASN357 ALA358 ALA359 GLU360 GLU361 LEU362 LYS363 PRO364 ARG365
Unit 6 THR158 GLY159 THR160 THR161 ILE162 LYS163 PHE164 ASN165 PRO166 PRO167 THR168 GLY169 THR170 ASP171 THR172 MET173 SER179 THR180 ASN181 ILE182 SER183 THR184 LYS185 HIS186 GLN187 CYS188 ILE189 THR190 ALA191 MET192 LYS193 GLU194 TYR195 GLU196 SER197 LYS198 SER199 LEU200 GLU201 GLU202 LEU203 ARG204 LEU205 GLU206 ASP207 TYR208 GLN209 ALA210 ASN211 ARG212 LYS213
Unit 7 PHE4 SER8 GLY9 PHE10 GLY11 THR12 SER13 GLY14 THR15 SER16 MET17 PHE18 THR23 ASP24 ASN25 HIS26 ASN27 PRO28 MET29 LYS30 ASP31 ILE32 GLU33 VAL34 THR35 SER36 SER37 PRO38 ASP39 ASP40 SER41 ILE42 GLY43 CYS44 LEU45 SER46 PHE47 SER48 PRO49 PRO50 THR51 LEU52 PRO53 GLY54 ASN55 PHE56 LEU57 ILE58 ALA59 GLY60 SER61 TRP62 ALA63 ASN64 ASP65 VAL66 ARG67 CYS68 TRP69 GLU70 VAL71 GLN72 ASP73 SER74 GLY75 GLN76 THR77 ILE78 PRO79 LYS80 ALA81 GLN82 GLN83 MET84 HIS85 THR86 GLY87 PRO88 VAL89 LEU90 ASP91 VAL92 CYS93 TRP94 SER95 ASP96 ASP97 GLY98 SER99 LYS100 VAL101 PHE102 THR103 ALA104 SER105 CYS106 ASP107 LYS108 THR109 ALA110 LYS111 MET112 TRP113 ASP114 LEU115 SER116 SER117 ASN118 GLN119 ALA120 ILE121 GLN122 ILE123 ALA124 GLN125 HIS126 ASP127 ALA128 PRO129 VAL130 LYS131 THR132 ILE133 HIS134 TRP135 ILE136 LYS137 ALA138 PRO139 ASN140 TYR141 SER142 CYS143 VAL144 MET145 THR146 GLY147 SER148 TRP149 ASP150 LYS151 THR152 LEU153 LYS154 PHE155 TRP156 ASP157 THR158 ARG159 SER160 SER161 ASN162 PRO163 MET164 MET165 VAL166 LEU167 GLN168 LEU169 PRO170 GLU171 ARG172 CYS173 TYR174 CYS175 ALA176 ASP177 VAL178 ILE179 TYR180 PRO181 MET182 ALA183 VAL184 VAL185 ALA186 THR187 ALA188 GLU189 ARG190 GLY191 LEU192 ILE193 VAL194 TYR195 GLN196 LEU197 GLU198 ASN199 GLN200 PRO201 SER202 GLU203 PHE204 ARG205 ARG206 ILE207 GLU208 SER209 PRO210 LEU211 LYS212 HIS213 GLN214 HIS215 ARG216 CYS217 VAL218 ALA219 ILE220 PHE221 LYS222 ASP223 LYS224 GLN225 ASN226 LYS227 PRO228 THR229 GLY230 PHE231 ALA232 LEU233 GLY234 SER235 ILE236 GLU237 GLY238 ARG239 VAL240 ALA241 ILE242 HIS243 TYR244 ILE245 ASN246 PRO247 PRO248 ASN249 PRO250 ALA251 LYS252 ASP253 ASN254 PHE255 THR256 PHE257 LYS258 CYS259 HIS260 ARG261 SER262 ASN263 GLY264 THR265 ASN266 THR267 SER268 ALA269 PRO270 GLN271 ASP272 ILE273 TYR274 ALA275 VAL276 ASN277 GLY278 ILE279 ALA280 PHE281 HIS282 PRO283 VAL284 HIS285 GLY286 THR287 LEU288 ALA289 THR290 VAL291 GLY292 SER293 ASP294 GLY295 ARG296 PHE297 SER298 PHE299 TRP300 ASP301 LYS302 ASP303 ALA304 ARG305 THR306 LYS307 LEU308 LYS309 THR310 SER311 GLU312 GLN313 LEU314 ASP315 GLN316 PRO317 ILE318 SER319 ALA320 CYS321 CYS322 PHE323 ASN324 HIS325 ASN326 GLY327 ASN328 ILE329 PHE330 ALA331 TYR332 ALA333 SER334 SER335 TYR336 ASP337 TRP338 SER339 LYS340 GLY341 HIS342 GLU343 PHE344 TYR345 ASN346 PRO347 GLN348 LYS349 LYS350 ASN351 TYR352 ILE353 PHE354 LEU355 ARG356 ASN357 ALA358 ALA359 GLU360 GLU361 LEU362 LYS363 PRO364 ARG365
Unit 8 GLY159 THR160 THR161 ILE162 LYS163 PHE164 ASN165 PRO166 PRO167 THR168 GLY169 THR170 ASP171 THR172 MET173 SER179 THR180 ASN181 ILE182 SER183 THR184 LYS185 HIS186 GLN187 CYS188 ILE189 THR190 ALA191 MET192 LYS193 GLU194 TYR195 GLU196 SER197 LYS198 SER199 LEU200 GLU201 GLU202 LEU203 ARG204 LEU205 GLU206 ASP207 TYR208 GLN209 ALA210 ASN211 ARG212 LYS213
Ligands
Unit 9 MES1001
Unit 10 MES1001
Unit 11 MES1001
Unit 12 MES1001
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany