3MLW - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ANTI-HIV-1 V3 FAB 1006-15D IN COMPLEX W V3 PEPTIDE
• Keywords: HUMAN MONOCLONAL ANTIBODY, FAB, HIV-1, GP120, THIRD VARIABLE ANTIBODY-ANTIGEN INTERACTION, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3MLW	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 LIGHT CHAIN	L	215	1621	0
2	Protein	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 HEAVY CHAIN	H	228	1726	0
3	Protein	HIV-1 GP120 THIRD VARIABLE REGION (V3) CROWN	P	17	143	0
4	Protein	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 LIGHT CHAIN	M	215	1621	0
5	Protein	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 HEAVY CHAIN	I	228	1726	0
6	Protein	HIV-1 GP120 THIRD VARIABLE REGION (V3) CROWN	Q	17	142	0
7	Ligand	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 LIGHT CHAIN	L	1	0	5
8	Ligand	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 HEAVY CHAIN	H	2	0	10
9	Ligand	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 LIGHT CHAIN	M	1	0	5
10	Ligand	HUMAN MONOCLONAL ANTI-HIV-1 GP120 V3 ANTIBODY 100 HEAVY CHAIN	I	2	0	10
11	Water			161	0	161
total				1087	6979	191

Proteins

Unit 1	GLN 1 SER 2 VAL 3 LEU 4 THR 5 GLN 6 PRO 7 PRO 8 SER 9 ALA 11 SER 12 GLY 13 THR 14 PRO 15 GLY 16 GLN 17 ARG 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 SER 24 GLY 25 ASN 26 SER 27 SER 27A ASN 27B ILE 28 GLU 29 ASN 30 ASN 31 TYR 32 VAL 33 TYR 34 TRP 35 TYR 36 GLN 37 GLN 38 LEU 39 PRO 40 GLY 41 SER 42 THR 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 PHE 49 ARG 50 ASP 51 ASP 52 GLN 53 ARG 54 PRO 55 SER 56 GLY 57 VAL 58 PRO 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 THR 69 SER 70 ALA 71 SER 72 LEU 73 ALA 74 ILE 75 SER 76 GLY 77 LEU 78 ARG 79 SER 80 GLU 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 ALA 89 SER 90 TRP 91 ASP 92 ASP 93 SER 94 ARG 95 GLY 95A GLY 95B PRO 95C ASP 95D TYR 96 VAL 97 PHE 98 GLY 99 THR 100 GLY 101 THR 102 LYS 103 VAL 104 THR 105 VAL 106 LEU 106A GLY 107 GLN 108 PRO 109 LYS 110 ALA 111 ASN 112 PRO 113 THR 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLN 126 ALA 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 LEU 135 ILE 136 SER 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 ALA 143 VAL 144 THR 145 VAL 146 ALA 147 TRP 148 LYS 149 ALA 150 ASP 151 GLY 152 SER 153 PRO 154 VAL 155 LYS 156 ALA 157 GLY 158 VAL 159 GLU 160 THR 161 THR 162 LYS 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 169 ASN 170 LYS 171 TYR 172 ALA 173 ALA 174 SER 175 SER 176 TYR 177 LEU 178 SER 179 LEU 180 THR 181 PRO 182 GLU 183 GLN 184 TRP 185 LYS 186 SER 187 HIS 188 ARG 189 SER 190 TYR 191 SER 192 CYS 193 GLN 194 VAL 195 THR 196 HIS 197 GLU 198 GLY 199 SER 200 THR 201 VAL 202 GLU 203 LYS 204 THR 205 VAL 206 ALA 207 PRO 208 THR 209
Unit 2	GLN 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 LYS 12 LYS 13 ALA 14 GLY 15 GLU 16 SER 17 LEU 18 GLU 19 ILE 20 SER 21 CYS 22 LYS 23 GLY 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 ASP 31 HIS 32 TRP 33 ILE 34 ALA 35 TRP 36 VAL 37 ARG 38 GLN 39 VAL 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 MET 50 ILE 51 TYR 52 PRO 52A GLY 53 ASP 54 SER 55 ASP 56 THR 57 ARG 58 TYR 59 SER 60 PRO 61 SER 62 LEU 63 GLN 64 GLY 65 ARG 66 VAL 67 THR 68 MET 69 SER 70 ALA 71 ASP 72 LYS 73 THR 74 LEU 75 SER 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 TRP 82 SER 82A ARG 82B LEU 82C GLU 83 ALA 84 SER 85 ASP 86 THR 87 ALA 88 MET 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 LEU 95 HIS 96 TYR 97 SER 98 ASP 99 ARG 100 SER 100A GLY 100B SER 100C TYR 100D PHE 100E ASN 100F ASP 100G VAL 100H PHE 100I HIS 101 MET 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 LYS 129 SER 130 THR 131 SER 132 GLY 133 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214 SER 215
Unit 3	LYS 303 ARG 304 LYS 305 ARG 306 ILE 307 HIS 308 ILE 309 GLY 312 PRO 313 GLY 314 ARG 315 ALA 316 PHE 317 TYR 318 THR 319 THR 320 LYS 321
Unit 4	GLN 1 SER 2 VAL 3 LEU 4 THR 5 GLN 6 PRO 7 PRO 8 SER 9 ALA 11 SER 12 GLY 13 THR 14 PRO 15 GLY 16 GLN 17 ARG 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 SER 24 GLY 25 ASN 26 SER 27 SER 27A ASN 27B ILE 28 GLU 29 ASN 30 ASN 31 TYR 32 VAL 33 TYR 34 TRP 35 TYR 36 GLN 37 GLN 38 LEU 39 PRO 40 GLY 41 SER 42 THR 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 PHE 49 ARG 50 ASP 51 ASP 52 GLN 53 ARG 54 PRO 55 SER 56 GLY 57 VAL 58 PRO 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 THR 69 SER 70 ALA 71 SER 72 LEU 73 ALA 74 ILE 75 SER 76 GLY 77 LEU 78 ARG 79 SER 80 GLU 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 ALA 89 SER 90 TRP 91 ASP 92 ASP 93 SER 94 ARG 95 GLY 95A GLY 95B PRO 95C ASP 95D TYR 96 VAL 97 PHE 98 GLY 99 THR 100 GLY 101 THR 102 LYS 103 VAL 104 THR 105 VAL 106 LEU 106A GLY 107 GLN 108 PRO 109 LYS 110 ALA 111 ASN 112 PRO 113 THR 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLN 126 ALA 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 LEU 135 ILE 136 SER 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 ALA 143 VAL 144 THR 145 VAL 146 ALA 147 TRP 148 LYS 149 ALA 150 ASP 151 GLY 152 SER 153 PRO 154 VAL 155 LYS 156 ALA 157 GLY 158 VAL 159 GLU 160 THR 161 THR 162 LYS 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 169 ASN 170 LYS 171 TYR 172 ALA 173 ALA 174 SER 175 SER 176 TYR 177 LEU 178 SER 179 LEU 180 THR 181 PRO 182 GLU 183 GLN 184 TRP 185 LYS 186 SER 187 HIS 188 ARG 189 SER 190 TYR 191 SER 192 CYS 193 GLN 194 VAL 195 THR 196 HIS 197 GLU 198 GLY 199 SER 200 THR 201 VAL 202 GLU 203 LYS 204 THR 205 VAL 206 ALA 207 PRO 208 THR 209
Unit 5	GLN 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 LYS 12 LYS 13 ALA 14 GLY 15 GLU 16 SER 17 LEU 18 GLU 19 ILE 20 SER 21 CYS 22 LYS 23 GLY 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 ASP 31 HIS 32 TRP 33 ILE 34 ALA 35 TRP 36 VAL 37 ARG 38 GLN 39 VAL 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 MET 50 ILE 51 TYR 52 PRO 52A GLY 53 ASP 54 SER 55 ASP 56 THR 57 ARG 58 TYR 59 SER 60 PRO 61 SER 62 LEU 63 GLN 64 GLY 65 ARG 66 VAL 67 THR 68 MET 69 SER 70 ALA 71 ASP 72 LYS 73 THR 74 LEU 75 SER 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 TRP 82 SER 82A ARG 82B LEU 82C GLU 83 ALA 84 SER 85 ASP 86 THR 87 ALA 88 MET 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 LEU 95 HIS 96 TYR 97 SER 98 ASP 99 ARG 100 SER 100A GLY 100B SER 100C TYR 100D PHE 100E ASN 100F ASP 100G VAL 100H PHE 100I HIS 101 MET 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 LYS 129 SER 130 THR 131 SER 132 GLY 133 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214 SER 215
Unit 6	ASN 302 LYS 303 ARG 304 LYS 305 ARG 306 ILE 307 HIS 308 ILE 309 GLY 312 PRO 313 GLY 314 ARG 315 ALA 316 PHE 317 TYR 318 THR 319 THR 320

Ligands

Unit 7	PO4 210
Unit 8	PO4 216 PO4 217
Unit 9	PO4 210
Unit 10	PO4 216 PO4 217