3ML1 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE PERIPLASMIC NITRATE REDUCTASE FROM CUPRIAVIDUS NECATOR
• Keywords: HETERODIMER, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3ML1	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PERIPLASMIC NITRATE REDUCTASE	A	799	6346	0
2	Protein	DIHEME CYTOCHROME C NAPB	B	109	862	0
3	Ligand	PERIPLASMIC NITRATE REDUCTASE	A	4	0	104
4	Ligand	DIHEME CYTOCHROME C NAPB	B	2	0	86
5	Water			672	0	672
total				1586	7208	862

Proteins

Unit 1

VAL 4 THR 5 ASP 6 SER 7 GLU 8 VAL 9 THR 10 LYS 11 LEU 12 LYS 13 TRP 14 SER 15 LYS 16 ALA 17 PRO 18 CYS 19 ARG 20 PHE 21 CYS 22 GLY 23 THR 24 GLY 25 CYS 26 GLY 27 VAL 28 THR 29 VAL 30 ALA 31 VAL 32 LYS 33 ASP 34 ASN 35 LYS 36 VAL 37 VAL 38 ALA 39 THR 40 GLN 41 GLY 42 ASP 43 PRO 44 GLN 45 ALA 46 GLU 47 VAL 48 ASN 49 LYS 50 GLY 51 LEU 52 ASN 53 CYS 54 VAL 55 LYS 56 GLY 57 TYR 58 PHE 59 LEU 60 SER 61 LYS 62 ILE 63 MET 64 TYR 65 GLY 66 GLN 67 ASP 68 ARG 69 LEU 70 THR 71 ARG 72 PRO 73 LEU 74 MET 75 ARG 76 MET 77 LYS 78 ASN 79 GLY 80 LYS 81 TYR 82 ASP 83 LYS 84 ASN 85 GLY 86 ASP 87 PHE 88 ALA 89 PRO 90 VAL 91 THR 92 TRP 93 ASP 94 GLN 95 ALA 96 PHE 97 ASP 98 GLU 99 MET 100 GLU 101 ARG 102 GLN 103 PHE 104 LYS 105 ARG 106 VAL 107 LEU 108 LYS 109 GLU 110 LYS 111 GLY 112 PRO 113 THR 114 ALA 115 VAL 116 GLY 117 MET 118 PHE 119 GLY 120 SER 121 GLY 122 GLN 123 TRP 124 THR 125 VAL 126 TRP 127 GLU 128 GLY 129 TYR 130 ALA 131 ALA 132 ALA 133 LYS 134 LEU 135 TYR 136 LYS 137 ALA 138 GLY 139 PHE 140 ARG 141 SER 142 ASN 143 ASN 144 ILE 145 ASP 146 PRO 147 ASN 148 ALA 149 ARG 150 HIS 151 CYS 152 MET 153 ALA 154 SER 155 ALA 156 ALA 157 ALA 158 GLY 159 PHE 160 MET 161 ARG 162 THR 163 PHE 164 GLY 165 MET 166 ASP 167 GLU 168 PRO 169 MET 170 GLY 171 CYS 172 TYR 173 ASP 174 ASP 175 PHE 176 GLU 177 ALA 178 ALA 179 ASP 180 ALA 181 PHE 182 VAL 183 LEU 184 TRP 185 GLY 186 SER 187 ASN 188 MET 189 ALA 190 GLU 191 MET 192 HIS 193 PRO 194 ILE 195 LEU 196 TRP 197 THR 198 ARG 199 VAL 200 THR 201 ASP 202 ARG 203 ARG 204 LEU 205 SER 206 HIS 207 PRO 208 LYS 209 THR 210 ARG 211 VAL 212 VAL 213 VAL 214 LEU 215 SER 216 THR 217 PHE 218 THR 219 HIS 220 ARG 221 CYS 222 PHE 223 ASP 224 LEU 225 ALA 226 ASP 227 ILE 228 GLY 229 ILE 230 ILE 231 PHE 232 LYS 233 PRO 234 GLN 235 THR 236 ASP 237 LEU 238 ALA 239 MET 240 LEU 241 ASN 242 TYR 243 ILE 244 ALA 245 ASN 246 TYR 247 ILE 248 ILE 249 ARG 250 ASN 251 ASN 252 LYS 253 VAL 254 ASN 255 LYS 256 ASP 257 PHE 258 VAL 259 ASN 260 LYS 261 HIS 262 THR 263 VAL 264 PHE 265 LYS 266 GLU 267 GLY 268 VAL 269 THR 270 ASP 271 ILE 272 GLY 273 TYR 274 GLY 275 LEU 276 ARG 277 PRO 278 ASP 279 HIS 280 PRO 281 LEU 282 GLN 283 LYS 284 ALA 285 ALA 286 LYS 287 ASN 288 ALA 289 SER 290 ASP 291 PRO 292 GLY 293 ALA 294 ALA 295 LYS 296 VAL 297 ILE 298 THR 299 PHE 300 ASP 301 GLU 302 PHE 303 ALA 304 LYS 305 PHE 306 VAL 307 SER 308 LYS 309 TYR 310 ASP 311 ALA 312 ASP 313 TYR 314 VAL 315 SER 316 LYS 317 LEU 318 SER 319 ALA 320 VAL 321 PRO 322 LYS 323 ALA 324 LYS 325 LEU 326 ASP 327 GLN 328 LEU 329 ALA 330 GLU 331 LEU 332 TYR 333 ALA 334 ASP 335 PRO 336 ASN 337 ILE 338 LYS 339 VAL 340 MET 341 SER 342 LEU 343 TRP 344 THR 345 MET 346 GLY 347 PHE 348 ASN 349 GLN 350 HIS 351 THR 352 ARG 353 GLY 354 THR 355 TRP 356 ALA 357 ASN 358 ASN 359 MET 360 VAL 361 TYR 362 ASN 363 LEU 364 HIS 365 LEU 366 LEU 367 THR 368 GLY 369 LYS 370 ILE 371 ALA 372 THR 373 PRO 374 GLY 375 ASN 376 SER 377 PRO 378 PHE 379 SER 380 LEU 381 THR 382 GLY 383 GLN 384 PRO 385 SER 386 ALA 387 CYS 388 GLY 389 THR 390 ALA 391 ARG 392 GLU 393 VAL 394 GLY 395 THR 396 PHE 397 SER 398 HIS 399 ARG 400 LEU 401 PRO 402 ALA 403 ASP 404 MET 405 VAL 406 VAL 407 THR 408 ASN 409 PRO 410 LYS 411 HIS 412 ARG 413 GLU 414 GLU 415 ALA 416 GLU 417 ARG 418 ILE 419 TRP 420 LYS 421 LEU 422 PRO 423 PRO 424 GLY 425 THR 426 ILE 427 PRO 428 ASP 429 LYS 430 PRO 431 GLY 432 TYR 433 ASP 434 ALA 435 VAL 436 LEU 437 GLN 438 ASN 439 ARG 440 MET 441 LEU 442 LYS 443 ASP 444 GLY 445 LYS 446 LEU 447 ASN 448 ALA 449 TYR 450 TRP 451 VAL 452 GLN 453 VAL 454 ASN 455 ASN 456 ASN 457 MET 458 GLN 459 ALA 460 ALA 461 ALA 462 ASN 463 LEU 464 MET 465 GLU 466 GLU 467 GLY 468 LEU 469 PRO 470 GLY 471 TYR 472 ARG 473 ASN 474 PRO 475 ALA 476 ASN 477 PHE 478 ILE 479 VAL 480 VAL 481 SER 482 ASP 483 ALA 484 TYR 485 PRO 486 THR 487 VAL 488 THR 489 ALA 490 LEU 491 ALA 492 ALA 493 ASP 494 LEU 495 VAL 496 LEU 497 PRO 498 SER 499 ALA 500 MET 501 TRP 502 VAL 503 GLU 504 LYS 505 GLU 506 GLY 507 ALA 508 TYR 509 GLY 510 ASN 511 ALA 512 GLU 513 ARG 514 ARG 515 THR 516 GLN 517 PHE 518 TRP 519 HIS 520 GLN 521 LEU 522 VAL 523 ASP 524 ALA 525 PRO 526 GLY 527 GLU 528 ALA 529 ARG 530 SER 531 ASP 532 LEU 533 TRP 534 GLN 535 LEU 536 VAL 537 GLU 538 PHE 539 ALA 540 LYS 541 ARG 542 PHE 543 LYS 544 VAL 545 GLU 546 GLU 547 VAL 548 TRP 549 PRO 550 PRO 551 GLU 552 LEU 553 ILE 554 ALA 555 LYS 556 LYS 557 PRO 558 GLU 559 TYR 560 LYS 561 GLY 562 LYS 563 THR 564 LEU 565 TYR 566 ASP 567 VAL 568 LEU 569 TYR 570 ARG 571 ASN 572 GLY 573 GLN 574 VAL 575 ASP 576 LYS 577 PHE 578 PRO 579 LEU 580 LYS 581 ASP 582 VAL 583 ASN 584 ALA 585 GLU 586 TYR 587 HIS 588 ASN 589 ALA 590 GLU 591 ALA 592 LYS 593 ALA 594 PHE 595 GLY 596 PHE 597 TYR 598 LEU 599 GLN 600 LYS 601 GLY 602 LEU 603 PHE 604 GLU 605 GLU 606 TYR 607 ALA 608 THR 609 PHE 610 GLY 611 ARG 612 GLY 613 HIS 614 GLY 615 HIS 616 ASP 617 LEU 618 ALA 619 PRO 620 PHE 621 ASP 622 ALA 623 TYR 624 HIS 625 GLU 626 ALA 627 ARG 628 GLY 629 LEU 630 ARG 631 TRP 632 PRO 633 VAL 634 VAL 635 ASN 636 GLY 637 LYS 638 GLU 639 THR 640 ARG 641 TRP 642 ARG 643 TYR 644 ARG 645 GLU 646 GLY 647 SER 648 ASP 649 PRO 650 TYR 651 VAL 652 LYS 653 ALA 654 GLY 655 THR 656 GLY 657 PHE 658 GLN 659 PHE 660 TYR 661 GLY 662 ASN 663 PRO 664 ASP 665 GLY 666 LYS 667 ALA 668 VAL 669 ILE 670 PHE 671 ALA 672 LEU 673 PRO 674 TYR 675 GLU 676 PRO 677 PRO 678 ALA 679 GLU 680 SER 681 PRO 682 ASP 683 LYS 684 GLU 685 TYR 686 PRO 687 TYR 688 TRP 689 LEU 690 VAL 691 THR 692 GLY 693 ARG 694 VAL 695 LEU 696 GLU 697 HIS 698 TRP 699 HIS 700 SER 701 GLY 702 SER 703 MET 704 THR 705 ARG 706 ARG 707 VAL 708 PRO 709 GLU 710 LEU 711 TYR 712 ARG 713 SER 714 PHE 715 PRO 716 ASN 717 ALA 718 VAL 719 VAL 720 PHE 721 MET 722 HIS 723 PRO 724 GLU 725 ASP 726 ALA 727 LYS 728 ALA 729 LEU 730 GLY 731 LEU 732 ARG 733 ARG 734 GLY 735 VAL 736 GLU 737 VAL 738 GLU 739 VAL 740 VAL 741 SER 742 ARG 743 ARG 744 GLY 745 ARG 746 MET 747 ARG 748 SER 749 ARG 750 ILE 751 GLU 752 THR 753 ARG 754 GLY 755 ARG 756 ASP 757 ALA 758 PRO 759 PRO 760 ARG 761 GLY 762 LEU 763 VAL 764 PHE 765 VAL 766 PRO 767 TRP 768 PHE 769 ASP 770 ALA 771 SER 772 GLN 773 LEU 774 ILE 775 ASN 776 LYS 777 VAL 778 THR 779 LEU 780 ASP 781 ALA 782 THR 783 CYS 784 PRO 785 ILE 786 SER 787 LEU 788 GLN 789 THR 790 ASP 791 PHE 792 LYS 793 LYS 794 CYS 795 ALA 796 VAL 797 LYS 798 ILE 799 VAL 800 LYS 801 VAL 802

Unit 2

GLY 1 LEU 2 VAL 3 ASP 4 ALA 5 MET 6 ARG 7 GLY 8 PRO 9 THR 10 ALA 11 ILE 12 ALA 13 ASN 14 GLU 15 PRO 16 ARG 17 ALA 18 PRO 19 LEU 20 LEU 21 TYR 22 PRO 23 THR 24 GLU 25 ASN 26 LYS 27 MET 37 GLN 38 PRO 39 PRO 40 THR 41 ILE 42 PRO 43 HIS 44 LYS 45 ILE 46 ASP 47 GLY 48 TYR 49 GLN 50 LEU 51 ASP 52 LYS 53 ASP 54 PHE 55 ASN 56 ARG 57 CYS 58 MET 59 PHE 60 CYS 61 HIS 62 ALA 63 ARG 64 THR 65 ALA 72 ILE 73 PRO 74 VAL 75 SER 76 ILE 77 THR 78 HIS 79 TYR 80 MET 81 ASP 82 ARG 83 ASP 84 ASN 85 ASN 86 VAL 87 LEU 88 ALA 89 ASP 90 VAL 91 SER 92 PRO 93 ARG 94 ARG 95 TYR 96 PHE 97 CYS 98 THR 99 GLN 100 CYS 101 HIS 102 VAL 103 PRO 104 GLN 105 ALA 106 ASP 107 THR 108 LYS 109 PRO 110 LEU 111 ILE 112 GLY 113 ASN 114 ASN 115 PHE 116 VAL 117 ASP 118 VAL 119 ASP 120 THR 121 ILE 122 LEU 123 LYS 124

Ligands

Unit 3	SF4 1801 MOS 1802 MGD 1803 MGD 1804
Unit 4	HEC 1128 HEC 1129