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Sequence, Chains, Asymmetric and Biological Units

Title CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SELEN STRUCTURE #2
Keywords RNA PSUEDOKNOT, ANIONS, SELENATE, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3MJA     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    B 29 621 0
2  RNA    C 14 296 0
3  Ligand   DOMAIN 3 OF THE CRICKET PARALYSIS VIRUS INTERGENI IRES RNA  B 1 0 5
4  Ligand    C 2 0 10
5  Ligand   DOMAIN 3 OF THE CRICKET PARALYSIS VIRUS INTERGENI IRES RNA  B 1 0 5
total       47 917 20

Nucleic acids
Unit 1 G6174 G6175 U6176 U6177 A6178 U6179 U6180 C6181 A6182 G6183 A6184 U6185 U6186 A6187 G6188 G6189 U6190 A6191 G6192 U6193 C6194 G6195 A6196 A6197 U6198 G6199 A6200 C6201 C6202
Unit 2 U6203 A6204 A6205 G6206 A6207 A6208 A6209 U6210 U6211 U6212 A6213 C6214 C6215 U6216

Ligands
Unit 3 SE4100
Unit 4 SE4101 SE4102
Unit 5 SE4103

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany