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Sequence, Chains, Asymmetric and Biological Units

Title BINDING OF RUBIDIUM IONS TO THE NUCLEOSOME CORE PARTICLE
Keywords PROTEIN-DNA COMPLEX, STRUCTURAL PROTEIN-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3MGR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HISTONE H3.2  A 99 817 0
2  Protein   HISTONE H4  B 79 627 0
3  Protein   HISTONE H2A  C 104 804 0
4  Protein   HISTONE H2B 1.1  D 99 785 0
5  Protein   HISTONE H3.2  E 99 817 0
6  Protein   HISTONE H4  F 87 703 0
7  Protein   HISTONE H2A  G 106 818 0
8  Protein   HISTONE H2B 1.1  H 99 785 0
9  Other macromolecule   DNA (147-MER)  I 147 3011 0
10  Other macromolecule   DNA (147-MER)  J 147 3010 0
11  Ligand   HISTONE H3.2  A 1 0 1
12  Ligand   HISTONE H2B 1.1  D 2 0 2
13  Ligand   HISTONE H3.2  E 2 0 2
14  Ligand   HISTONE H2A  G 1 0 1
15  Ligand   HISTONE H2B 1.1  H 1 0 1
16  Ligand   DNA (147-MER)  I 7 0 7
17  Ligand   DNA (147-MER)  J 9 0 9
total       1089 12177 23

Proteins
Unit 1 LYS37 PRO38 HIS39 ARG40 TYR41 ARG42 PRO43 GLY44 THR45 VAL46 ALA47 LEU48 ARG49 GLU50 ILE51 ARG52 ARG53 TYR54 GLN55 LYS56 SER57 THR58 GLU59 LEU60 LEU61 ILE62 ARG63 LYS64 LEU65 PRO66 PHE67 GLN68 ARG69 LEU70 VAL71 ARG72 GLU73 ILE74 ALA75 GLN76 ASP77 PHE78 LYS79 THR80 ASP81 LEU82 ARG83 PHE84 GLN85 SER86 SER87 ALA88 VAL89 MET90 ALA91 LEU92 GLN93 GLU94 ALA95 SER96 GLU97 ALA98 TYR99 LEU100 VAL101 ALA102 LEU103 PHE104 GLU105 ASP106 THR107 ASN108 LEU109 CYS110 ALA111 ILE112 HIS113 ALA114 LYS115 ARG116 VAL117 THR118 ILE119 MET120 PRO121 LYS122 ASP123 ILE124 GLN125 LEU126 ALA127 ARG128 ARG129 ILE130 ARG131 GLY132 GLU133 ARG134 ALA135
Unit 2 ASP24 ASN25 ILE26 GLN27 GLY28 ILE29 THR30 LYS31 PRO32 ALA33 ILE34 ARG35 ARG36 LEU37 ALA38 ARG39 ARG40 GLY41 GLY42 VAL43 LYS44 ARG45 ILE46 SER47 GLY48 LEU49 ILE50 TYR51 GLU52 GLU53 THR54 ARG55 GLY56 VAL57 LEU58 LYS59 VAL60 PHE61 LEU62 GLU63 ASN64 VAL65 ILE66 ARG67 ASP68 ALA69 VAL70 THR71 TYR72 THR73 GLU74 HIS75 ALA76 LYS77 ARG78 LYS79 THR80 VAL81 THR82 ALA83 MET84 ASP85 VAL86 VAL87 TYR88 ALA89 LEU90 LYS91 ARG92 GLN93 GLY94 ARG95 THR96 LEU97 TYR98 GLY99 PHE100 GLY101 GLY102
Unit 3 LYS15 THR16 ARG17 SER18 SER19 ARG20 ALA21 GLY22 LEU23 GLN24 PHE25 PRO26 VAL27 GLY28 ARG29 VAL30 HIS31 ARG32 LEU33 LEU34 ARG35 LYS36 GLY37 ASN38 TYR39 ALA40 GLU41 ARG42 VAL43 GLY44 ALA45 GLY46 ALA47 PRO48 VAL49 TYR50 LEU51 ALA52 ALA53 VAL54 LEU55 GLU56 TYR57 LEU58 THR59 ALA60 GLU61 ILE62 LEU63 GLU64 LEU65 ALA66 GLY67 ASN68 ALA69 ALA70 ARG71 ASP72 ASN73 LYS74 LYS75 THR76 ARG77 ILE78 ILE79 PRO80 ARG81 HIS82 LEU83 GLN84 LEU85 ALA86 VAL87 ARG88 ASN89 ASP90 GLU91 GLU92 LEU93 ASN94 LYS95 LEU96 LEU97 GLY98 ARG99 VAL100 THR101 ILE102 ALA103 GLN104 GLY105 GLY106 VAL107 LEU108 PRO109 ASN110 ILE111 GLN112 SER113 VAL114 LEU115 LEU116 PRO117 LYS118
Unit 4 LYS24 LYS25 ARG26 ARG27 LYS28 THR29 ARG30 LYS31 GLU32 SER33 TYR34 ALA35 ILE36 TYR37 VAL38 TYR39 LYS40 VAL41 LEU42 LYS43 GLN44 VAL45 HIS46 PRO47 ASP48 THR49 GLY50 ILE51 SER52 SER53 LYS54 ALA55 MET56 SER57 ILE58 MET59 ASN60 SER61 PHE62 VAL63 ASN64 ASP65 VAL66 PHE67 GLU68 ARG69 ILE70 ALA71 GLY72 GLU73 ALA74 SER75 ARG76 LEU77 ALA78 HIS79 TYR80 ASN81 LYS82 ARG83 SER84 THR85 ILE86 THR87 SER88 ARG89 GLU90 ILE91 GLN92 THR93 ALA94 VAL95 ARG96 LEU97 LEU98 LEU99 PRO100 GLY101 GLU102 LEU103 ALA104 LYS105 HIS106 ALA107 VAL108 SER109 GLU110 GLY111 THR112 LYS113 ALA114 VAL115 THR116 LYS117 TYR118 THR119 SER120 ALA121 LYS122
Unit 5 LYS37 PRO38 HIS39 ARG40 TYR41 ARG42 PRO43 GLY44 THR45 VAL46 ALA47 LEU48 ARG49 GLU50 ILE51 ARG52 ARG53 TYR54 GLN55 LYS56 SER57 THR58 GLU59 LEU60 LEU61 ILE62 ARG63 LYS64 LEU65 PRO66 PHE67 GLN68 ARG69 LEU70 VAL71 ARG72 GLU73 ILE74 ALA75 GLN76 ASP77 PHE78 LYS79 THR80 ASP81 LEU82 ARG83 PHE84 GLN85 SER86 SER87 ALA88 VAL89 MET90 ALA91 LEU92 GLN93 GLU94 ALA95 SER96 GLU97 ALA98 TYR99 LEU100 VAL101 ALA102 LEU103 PHE104 GLU105 ASP106 THR107 ASN108 LEU109 CYS110 ALA111 ILE112 HIS113 ALA114 LYS115 ARG116 VAL117 THR118 ILE119 MET120 PRO121 LYS122 ASP123 ILE124 GLN125 LEU126 ALA127 ARG128 ARG129 ILE130 ARG131 GLY132 GLU133 ARG134 ALA135
Unit 6 LYS16 ARG17 HIS18 ARG19 LYS20 VAL21 LEU22 ARG23 ASP24 ASN25 ILE26 GLN27 GLY28 ILE29 THR30 LYS31 PRO32 ALA33 ILE34 ARG35 ARG36 LEU37 ALA38 ARG39 ARG40 GLY41 GLY42 VAL43 LYS44 ARG45 ILE46 SER47 GLY48 LEU49 ILE50 TYR51 GLU52 GLU53 THR54 ARG55 GLY56 VAL57 LEU58 LYS59 VAL60 PHE61 LEU62 GLU63 ASN64 VAL65 ILE66 ARG67 ASP68 ALA69 VAL70 THR71 TYR72 THR73 GLU74 HIS75 ALA76 LYS77 ARG78 LYS79 THR80 VAL81 THR82 ALA83 MET84 ASP85 VAL86 VAL87 TYR88 ALA89 LEU90 LYS91 ARG92 GLN93 GLY94 ARG95 THR96 LEU97 TYR98 GLY99 PHE100 GLY101 GLY102
Unit 7 LYS13 ALA14 LYS15 THR16 ARG17 SER18 SER19 ARG20 ALA21 GLY22 LEU23 GLN24 PHE25 PRO26 VAL27 GLY28 ARG29 VAL30 HIS31 ARG32 LEU33 LEU34 ARG35 LYS36 GLY37 ASN38 TYR39 ALA40 GLU41 ARG42 VAL43 GLY44 ALA45 GLY46 ALA47 PRO48 VAL49 TYR50 LEU51 ALA52 ALA53 VAL54 LEU55 GLU56 TYR57 LEU58 THR59 ALA60 GLU61 ILE62 LEU63 GLU64 LEU65 ALA66 GLY67 ASN68 ALA69 ALA70 ARG71 ASP72 ASN73 LYS74 LYS75 THR76 ARG77 ILE78 ILE79 PRO80 ARG81 HIS82 LEU83 GLN84 LEU85 ALA86 VAL87 ARG88 ASN89 ASP90 GLU91 GLU92 LEU93 ASN94 LYS95 LEU96 LEU97 GLY98 ARG99 VAL100 THR101 ILE102 ALA103 GLN104 GLY105 GLY106 VAL107 LEU108 PRO109 ASN110 ILE111 GLN112 SER113 VAL114 LEU115 LEU116 PRO117 LYS118
Unit 8 LYS24 LYS25 ARG26 ARG27 LYS28 THR29 ARG30 LYS31 GLU32 SER33 TYR34 ALA35 ILE36 TYR37 VAL38 TYR39 LYS40 VAL41 LEU42 LYS43 GLN44 VAL45 HIS46 PRO47 ASP48 THR49 GLY50 ILE51 SER52 SER53 LYS54 ALA55 MET56 SER57 ILE58 MET59 ASN60 SER61 PHE62 VAL63 ASN64 ASP65 VAL66 PHE67 GLU68 ARG69 ILE70 ALA71 GLY72 GLU73 ALA74 SER75 ARG76 LEU77 ALA78 HIS79 TYR80 ASN81 LYS82 ARG83 SER84 THR85 ILE86 THR87 SER88 ARG89 GLU90 ILE91 GLN92 THR93 ALA94 VAL95 ARG96 LEU97 LEU98 LEU99 PRO100 GLY101 GLU102 LEU103 ALA104 LYS105 HIS106 ALA107 VAL108 SER109 GLU110 GLY111 THR112 LYS113 ALA114 VAL115 THR116 LYS117 TYR118 THR119 SER120 ALA121 LYS122

Other macromolecules
Unit 9 DA-73 DT-72 DC-71 DA-70 DA-69 DT-68 DA-67 DT-66 DC-65 DC-64 DA-63 DC-62 DC-61 DT-60 DG-59 DC-58 DA-57 DG-56 DA-55 DT-54 DA-53 DC-52 DT-51 DA-50 DC-49 DC-48 DA-47 DA-46 DA-45 DA-44 DG-43 DT-42 DG-41 DT-40 DA-39 DT-38 DT-37 DT-36 DG-35 DG-34 DA-33 DA-32 DA-31 DC-30 DT-29 DG-28 DC-27 DT-26 DC-25 DC-24 DA-23 DT-22 DC-21 DA-20 DA-19 DA-18 DA-17 DG-16 DG-15 DC-14 DA-13 DT-12 DG-11 DT-10 DT-9 DC-8 DA-7 DG-6 DC-5 DT-4 DG-3 DG-2 DA-1 DA0 DT1 DC2 DC3 DA4 DG5 DC6 DT7 DG8 DA9 DA10 DC11 DA12 DT13 DG14 DC15 DC16 DT17 DT18 DT19 DT20 DG21 DA22 DT23 DG24 DG25 DA26 DG27 DC28 DA29 DG30 DT31 DT32 DT33 DC34 DC35 DA36 DA37 DA38 DT39 DA40 DC41 DA42 DC43 DT44 DT45 DT46 DT47 DG48 DG49 DT50 DA51 DG52 DT53 DA54 DT55 DC56 DT57 DG58 DC59 DA60 DG61 DG62 DT63 DG64 DG65 DA66 DT67 DA68 DT69 DT70 DG71 DA72 DT73
Unit 10 DA-73 DT-72 DC-71 DA-70 DA-69 DT-68 DA-67 DT-66 DC-65 DC-64 DA-63 DC-62 DC-61 DT-60 DG-59 DC-58 DA-57 DG-56 DA-55 DT-54 DA-53 DC-52 DT-51 DA-50 DC-49 DC-48 DA-47 DA-46 DA-45 DA-44 DG-43 DT-42 DG-41 DT-40 DA-39 DT-38 DT-37 DT-36 DG-35 DG-34 DA-33 DA-32 DA-31 DC-30 DT-29 DG-28 DC-27 DT-26 DC-25 DC-24 DA-23 DT-22 DC-21 DA-20 DA-19 DA-18 DA-17 DG-16 DG-15 DC-14 DA-13 DT-12 DG-11 DT-10 DT-9 DC-8 DA-7 DG-6 DC-5 DT-4 DG-3 DG-2 DA-1 DT0 DT1 DC2 DC3 DA4 DG5 DC6 DT7 DG8 DA9 DA10 DC11 DA12 DT13 DG14 DC15 DC16 DT17 DT18 DT19 DT20 DG21 DA22 DT23 DG24 DG25 DA26 DG27 DC28 DA29 DG30 DT31 DT32 DT33 DC34 DC35 DA36 DA37 DA38 DT39 DA40 DC41 DA42 DC43 DT44 DT45 DT46 DT47 DG48 DG49 DT50 DA51 DG52 DT53 DA54 DT55 DC56 DT57 DG58 DC59 DA60 DG61 DG62 DT63 DG64 DG65 DA66 DT67 DA68 DT69 DT70 DG71 DA72 DT73

Ligands
Unit 11 CL3147
Unit 12 RB123 CL3146
Unit 13 MN3132 CL3148
Unit 14 CL3145
Unit 15 RB123
Unit 16 RB74 MN3137 MN3138 MN3140 MN3141 MN3142 MN3143
Unit 17 RB74 RB75 MN3131 MN3133 MN3134 MN3135 MN3136 MN3139 MN3144

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany