3MFD - Sequence, Chains, Asymmetric and Biological Units

• Title: THE STRUCTURE OF THE BETA-LACTAMASE SUPERFAMILY DOMAIN OF D- ALANINE CARBOXYPEPTIDASE FROM BACILLUS SUBTILIS
• Keywords: PENICILLIN-BINDING PROTEIN 5*, BETA-LACTAMASE, STRUCTURAL GE PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STR GENOMICS, MCSG, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3MFD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB	A	326	2456	112
2	Protein	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB	B	306	2278	112
3	Ligand	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB	A	7	0	55
4	Ligand	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB	B	5	0	29
5	Water			773	0	773
total				1417	4734	1081

Proteins

Unit 1

ALA 28 ILE 29 ASP 30 VAL 31 SER 32 ALA 33 LYS 34 SER 35 ALA 36 ILE 37 ILE 38 ILE 39 ASP 40 GLY 41 ALA 42 SER 43 GLY 44 ARG 45 VAL 46 LEU 47 TYR 48 ALA 49 LYS 50 ASP 51 GLU 52 HIS 53 GLN 54 LYS 55 ARG 56 ARG 57 ILE 58 ALA 59 SER 60 ILE 61 THR 62 LYS 63 ILE 64 MSE 65 THR 66 ALA 67 VAL 68 LEU 69 ALA 70 ILE 71 GLU 72 SER 73 GLY 74 LYS 75 MSE 76 ASP 77 GLN 78 THR 79 VAL 80 THR 81 VAL 82 SER 83 ALA 84 ASN 85 ALA 86 VAL 87 ARG 88 THR 89 GLU 90 GLY 91 SER 92 ALA 93 ILE 94 TYR 95 LEU 96 THR 97 GLU 98 GLY 99 GLN 100 LYS 101 VAL 102 LYS 103 LEU 104 LYS 105 ASP 106 LEU 107 VAL 108 TYR 109 GLY 110 LEU 111 MSE 112 LEU 113 ARG 114 SER 115 GLY 116 ASN 117 ASP 118 ALA 119 ALA 120 VAL 121 ALA 122 ILE 123 ALA 124 GLU 125 HIS 126 VAL 127 GLY 128 GLY 129 SER 130 LEU 131 ASP 132 GLY 133 PHE 134 VAL 135 TYR 136 MSE 137 MSE 138 ASN 139 GLN 140 LYS 141 ALA 142 GLU 143 GLN 144 LEU 145 GLY 146 MSE 147 LYS 148 ASN 149 THR 150 ARG 151 PHE 152 GLN 153 ASN 154 PRO 155 HIS 156 GLY 157 LEU 158 ASP 159 ASP 160 HIS 161 GLU 162 ASN 163 HIS 164 TYR 165 SER 166 THR 167 ALA 168 TYR 169 ASP 170 MSE 171 ALA 172 ILE 173 LEU 174 THR 175 LYS 176 TYR 177 ALA 178 MSE 179 LYS 180 LEU 181 LYS 182 ASP 183 TYR 184 GLN 185 LYS 186 ILE 187 SER 188 GLY 189 THR 190 LYS 191 ILE 192 TYR 193 LYS 194 ALA 195 GLU 196 THR 197 MSE 198 GLU 199 SER 200 VAL 201 TRP 202 LYS 203 ASN 204 LYS 205 ASN 206 LYS 207 LEU 208 LEU 209 THR 210 MSE 211 LEU 212 TYR 213 PRO 214 TYR 215 SER 216 THR 217 GLY 218 GLY 219 LYS 220 THR 221 GLY 222 TYR 223 THR 224 LYS 225 LEU 226 ALA 227 LYS 228 ARG 229 THR 230 LEU 231 VAL 232 SER 233 THR 234 ALA 235 SER 236 LYS 237 ASP 238 GLY 239 ILE 240 ASP 241 LEU 242 ILE 243 ALA 244 VAL 245 THR 246 ILE 247 ASN 248 ASP 249 PRO 250 ASN 251 ASP 252 TRP 253 ASP 254 ASP 255 HIS 256 MSE 257 LYS 258 MSE 259 PHE 260 ASN 261 TYR 262 VAL 263 PHE 264 GLU 265 HIS 266 TYR 267 GLN 268 THR 269 TYR 270 LEU 271 ILE 272 ALA 273 LYS 274 LYS 275 GLY 276 ASP 277 ILE 278 PRO 279 LYS 280 LEU 281 LYS 282 GLY 283 THR 284 PHE 285 TYR 286 GLU 287 SER 288 LYS 289 ALA 290 PHE 291 ILE 292 LYS 293 ARG 294 ASP 295 ILE 296 THR 297 TYR 298 LEU 299 LEU 300 THR 301 GLU 302 GLU 303 GLU 304 LYS 305 GLU 306 ASN 307 VAL 308 LYS 309 ILE 310 ASN 311 THR 312 THR 313 LEU 314 LEU 315 LYS 316 PRO 317 LYS 318 LYS 319 ALA 320 TRP 321 GLU 322 LYS 323 ASP 324 ALA 325 SER 326 LYS 327 ILE 328 PRO 329 ASP 330 ILE 331 VAL 332 GLY 333 HIS 334 MSE 335 GLU 336 ILE 337 MSE 338 PHE 339 ASN 340 ASP 341 ALA 342 THR 343 ILE 344 ALA 345 LYS 346 VAL 347 PRO 348 ILE 349 TYR 350 TYR 351 GLU 352 ASN 353

Unit 2

ALA 28 ILE 29 ASP 30 VAL 31 SER 32 ALA 33 LYS 34 SER 35 ALA 36 ILE 37 ILE 38 ILE 39 ASP 40 GLY 41 ALA 42 SER 43 GLY 44 ARG 45 VAL 46 LEU 47 TYR 48 ALA 49 LYS 50 ASP 51 GLU 52 HIS 53 GLN 54 LYS 55 ARG 56 ARG 57 ILE 58 ALA 59 SER 60 ILE 61 THR 62 LYS 63 ILE 64 MSE 65 THR 66 ALA 67 VAL 68 LEU 69 ALA 70 ILE 71 GLU 72 SER 73 GLY 74 LYS 75 MSE 76 ASP 77 GLN 78 THR 79 VAL 80 THR 81 VAL 82 SER 83 ALA 84 ASN 85 ALA 86 VAL 87 ARG 88 THR 89 GLU 90 GLY 91 SER 92 ALA 93 ILE 94 TYR 95 LEU 96 THR 97 GLU 98 GLY 99 GLN 100 LYS 101 VAL 102 LYS 103 LEU 104 LYS 105 ASP 106 LEU 107 VAL 108 TYR 109 GLY 110 LEU 111 MSE 112 LEU 113 ARG 114 SER 115 GLY 116 ASN 117 ASP 118 ALA 119 ALA 120 VAL 121 ALA 122 ILE 123 ALA 124 GLU 125 HIS 126 VAL 127 GLY 128 GLY 129 SER 130 LEU 131 ASP 132 GLY 133 PHE 134 VAL 135 TYR 136 MSE 137 MSE 138 ASN 139 GLN 140 LYS 141 ALA 142 GLU 143 GLN 144 LEU 145 GLY 146 MSE 147 LYS 148 ASN 149 THR 150 ARG 151 PHE 152 GLN 153 ASN 154 PRO 155 HIS 156 GLY 157 LEU 158 ASP 159 ASP 160 HIS 161 GLU 162 ASN 163 HIS 164 TYR 165 SER 166 THR 167 ALA 168 TYR 169 ASP 170 MSE 171 ALA 172 ILE 173 LEU 174 THR 175 LYS 176 TYR 177 ALA 178 MSE 179 LYS 180 LEU 181 LYS 182 ASP 183 TYR 184 GLN 185 LYS 186 ILE 187 SER 188 GLY 189 THR 190 LYS 191 ILE 192 TYR 193 LYS 194 ALA 195 GLU 196 THR 197 MSE 198 GLU 199 SER 200 VAL 201 TRP 202 LYS 203 ASN 204 LYS 205 ASN 206 LYS 207 LEU 208 LEU 209 THR 210 MSE 211 LEU 212 TYR 213 PRO 214 TYR 215 SER 216 THR 217 GLY 218 GLY 219 LYS 220 THR 221 GLY 222 TYR 223 THR 224 LYS 225 LEU 226 ALA 227 LYS 228 ARG 229 THR 230 LEU 231 VAL 232 SER 233 THR 234 ALA 235 SER 236 LYS 237 ASP 238 GLY 239 ILE 240 ASP 241 LEU 242 ILE 243 ALA 244 VAL 245 THR 246 ILE 247 ASN 248 ASP 249 PRO 250 ASN 251 ASP 252 TRP 253 ASP 254 ASP 255 HIS 256 MSE 257 LYS 258 MSE 259 PHE 260 ASN 261 TYR 262 VAL 263 PHE 264 GLU 265 HIS 266 TYR 267 GLN 268 THR 269 TYR 270 LEU 271 ILE 272 ALA 273 LYS 274 ASP 277 ILE 278 PRO 279 LYS 280 LEU 281 LYS 282 GLY 283 THR 284 PHE 285 TYR 286 GLU 287 SER 288 LYS 289 ALA 290 PHE 291 ILE 292 LYS 293 ARG 294 ASP 295 ILE 296 THR 297 TYR 298 LEU 299 LEU 300 THR 301 GLU 302 GLU 303 GLU 304 LYS 305 GLU 306 ASN 307 VAL 308 LYS 309 ILE 310 ASN 311 THR 312 THR 313 LEU 314 VAL 332 GLY 333 HIS 334 MSE 335 GLU 336 ILE 337 MSE 338 PHE 339 ASN 340 ASP 341 ALA 342 THR 343 ILE 344 ALA 345 LYS 346 VAL 347 PRO 348 ILE 349 TYR 350 TYR 351 GLU 352

Ligands

Unit 3	CIT 1 EDO 359 EDO 360 EDO 361 CIT 362 EDO 363 CIT 364
Unit 4	CIT 1 EDO 359 EDO 360 EDO 361 EDO 362