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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SCDPL1
Keywords CARBOXY-LYASE ACTIVITY, PYRIDOXYL PHOSPHATE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3MC6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SPHINGOSINE-1-PHOSPHATE LYASE  A 426 3296 24
2  Protein   SPHINGOSINE-1-PHOSPHATE LYASE  C 424 3295 0
3  Ligand   SPHINGOSINE-1-PHOSPHATE LYASE  A 1 0 5
4  Ligand   SPHINGOSINE-1-PHOSPHATE LYASE  C 2 0 10
5 Water     3 0 4
total       856 6591 43
Proteins
Unit 1 GLN131 LEU132 MET133 ASN134 PHE135 PRO136 GLN137 LEU138 PRO139 SER140 ASN141 GLY142 ILE143 PRO144 GLN145 ASP146 ASP147 VAL148 ILE149 GLU150 GLU151 LEU152 ASN153 LYS154 LEU155 ASN156 ASP157 LEU158 ILE159 PRO160 HIS161 THR162 GLN163 TRP164 LYS165 GLU166 GLY167 LYS168 VAL169 SER170 GLY171 ALA172 VAL173 TYR174 HIS175 GLY176 GLY177 ASP178 ASP179 LEU180 ILE181 HIS182 LEU183 GLN184 THR185 ILE186 ALA187 TYR188 GLU189 LYS190 TYR191 CYS192 VAL193 ALA194 ASN195 GLN196 LEU197 HIS198 PRO199 ASP200 VAL201 PHE202 PRO203 ALA204 VAL205 ARG206 LYS207 MET208 GLU209 SER210 GLU211 VAL212 VAL213 SER214 MET215 VAL216 LEU217 ARG218 MET219 PHE220 ASN221 ALA222 PRO223 SER224 ASP225 THR226 GLY227 CYS228 GLY229 THR230 THR231 THR232 SER233 GLY234 GLY235 THR236 GLU237 SER238 LEU239 LEU240 LEU241 ALA242 CYS243 LEU244 SER245 ALA246 LYS247 MET248 TYR249 ALA250 LEU251 HIS252 HIS253 ARG254 GLY255 ILE256 THR257 GLU258 PRO259 GLU260 ILE261 ILE262 ALA263 PRO264 VAL265 THR266 ALA267 HIS268 ALA269 GLY270 PHE271 ASP272 LYS273 ALA274 ALA275 TYR276 TYR277 PHE278 GLY279 MET280 LYS281 LEU282 ARG283 HIS284 VAL285 GLU286 LEU287 ASP288 PRO289 THR290 THR291 TYR292 GLN293 VAL294 ASP295 LEU296 GLY297 LYS298 VAL299 LYS300 LYS301 PHE302 ILE303 ASN304 LYS305 ASN306 THR307 VAL308 LEU309 LEU310 VAL311 GLY312 SER313 ALA314 PRO315 ASN316 PHE317 PRO318 HIS319 GLY320 ILE321 ALA322 ASP323 ASP324 ILE325 GLU326 GLY327 LEU328 GLY329 LYS330 ILE331 ALA332 GLN333 LYS334 TYR335 LYS336 LEU337 PRO338 LEU339 HIS340 VAL341 ASP342 SER343 CYS344 LEU345 GLY346 SER347 PHE348 ILE349 VAL350 SER351 PHE352 MET353 GLU354 LYS355 ALA356 GLY357 TYR358 LYS359 ASN360 LEU361 PRO362 LEU363 LEU364 ASP365 PHE366 ARG367 VAL368 PRO369 GLY370 VAL371 THR372 SER373 ILE374 SER375 CYS376 ASP377 THR378 HIS379 LLP380 TYR381 GLY382 PHE383 ALA384 PRO385 LYS386 GLY387 SER388 SER389 VAL390 ILE391 MET392 TYR393 ARG394 ASN395 SER396 ASP397 LEU398 ARG399 MET400 HIS401 GLN402 TYR403 TYR404 VAL405 ASN406 PRO407 ALA408 TRP409 THR410 GLY411 GLY412 LEU413 TYR414 GLY415 SER416 PRO417 THR418 LEU419 ALA420 GLY421 SER422 ARG423 PRO424 GLY425 ALA426 ILE427 VAL428 VAL429 GLY430 CYS431 TRP432 ALA433 THR434 MET435 VAL436 ASN437 MET438 GLY439 GLU440 ASN441 GLY442 TYR443 ILE444 GLU445 SER446 CYS447 GLN448 GLU449 ILE450 VAL451 GLY452 ALA453 ALA454 MET455 LYS456 PHE457 LYS458 LYS459 TYR460 ILE461 GLN462 GLU463 ASN464 ILE465 PRO466 ASP467 LEU468 ASP469 ILE470 MET471 GLY472 ASN473 PRO474 ARG475 TYR476 SER477 VAL478 ILE479 SER480 PHE481 SER482 SER483 LYS484 THR485 LEU486 ASN487 ILE488 HIS489 GLU490 LEU491 SER492 ASP493 ARG494 LEU495 SER496 LYS497 LYS498 GLY499 TRP500 HIS501 PHE502 ASN503 ALA504 LEU505 GLN506 LYS507 PRO508 VAL509 ALA510 LEU511 HIS512 MET513 ALA514 PHE515 THR516 ARG517 LEU518 SER519 ALA520 HIS521 VAL522 VAL523 ASP524 GLU525 ILE526 CYS527 ASP528 ILE529 LEU530 ARG531 THR532 THR533 VAL534 GLN535 GLU536 LEU537 LYS538 SER539 GLU540 GLY564 VAL565 ALA566 ASP567 LYS568 LEU569 ILE570 VAL571 GLY572 PHE573 LEU574 ASP575 ALA576 LEU577 TYR578 LYS579
Unit 2 SER130 GLN131 LEU132 MET133 ASN134 PHE135 PRO136 GLN137 LEU138 PRO139 SER140 ASN141 GLY142 ILE143 PRO144 GLN145 ASP146 ASP147 VAL148 ILE149 GLU150 GLU151 LEU152 ASN153 LYS154 LEU155 ASN156 ASP157 LEU158 ILE159 PRO160 HIS161 THR162 GLN163 TRP164 LYS165 GLU166 GLY167 LYS168 VAL169 SER170 GLY171 ALA172 VAL173 TYR174 HIS175 GLY176 GLY177 ASP178 ASP179 LEU180 ILE181 HIS182 LEU183 GLN184 THR185 ILE186 ALA187 TYR188 GLU189 LYS190 TYR191 CYS192 VAL193 ALA194 ASN195 GLN196 LEU197 HIS198 PRO199 ASP200 VAL201 PHE202 PRO203 ALA204 VAL205 ARG206 LYS207 MET208 GLU209 SER210 GLU211 VAL212 VAL213 SER214 MET215 VAL216 LEU217 ARG218 MET219 PHE220 ASN221 ALA222 PRO223 SER224 ASP225 THR226 GLY227 CYS228 GLY229 THR230 THR231 THR232 SER233 GLY234 GLY235 THR236 GLU237 SER238 LEU239 LEU240 LEU241 ALA242 CYS243 LEU244 SER245 ALA246 LYS247 MET248 TYR249 ALA250 LEU251 HIS252 HIS253 ARG254 GLY255 ILE256 THR257 GLU258 PRO259 GLU260 ILE261 ILE262 ALA263 PRO264 VAL265 THR266 ALA267 HIS268 ALA269 GLY270 PHE271 ASP272 LYS273 ALA274 ALA275 TYR276 TYR277 PHE278 GLY279 MET280 LYS281 LEU282 ARG283 HIS284 VAL285 GLU286 LEU287 ASP288 PRO289 THR290 THR291 TYR292 GLN293 VAL294 ASP295 LEU296 GLY297 LYS298 VAL299 LYS300 LYS301 PHE302 ILE303 ASN304 LYS305 ASN306 THR307 VAL308 LEU309 LEU310 VAL311 GLY312 SER313 ALA314 PRO315 ASN316 PHE317 PRO318 HIS319 GLY320 ILE321 ALA322 ASP323 ASP324 ILE325 GLU326 GLY327 LEU328 GLY329 LYS330 ILE331 ALA332 GLN333 LYS334 TYR335 LYS336 LEU337 PRO338 LEU339 HIS340 VAL341 ASP342 SER343 CYS344 LEU345 GLY346 SER347 PHE348 ILE349 VAL350 SER351 PHE352 MET353 GLU354 LYS355 ALA356 GLY357 TYR358 LYS359 ASN360 LEU361 PRO362 LEU363 LEU364 ASP365 PHE366 ARG367 VAL368 PRO369 GLY370 VAL371 THR372 SER373 ILE374 SER375 CYS376 ASP377 THR378 HIS379 LYS380 TYR381 GLY382 PHE383 ALA384 PRO385 LYS386 GLY387 SER388 SER389 VAL390 ILE391 MET392 TYR393 ARG394 ASN395 SER396 ASP397 LEU398 ARG399 MET400 HIS401 GLN402 TYR403 TYR404 VAL405 ASN406 PRO407 ALA408 TRP409 THR410 GLY411 GLY412 LEU413 TYR414 GLY415 SER416 PRO417 THR418 LEU419 ALA420 GLY421 SER422 ARG423 PRO424 GLY425 ALA426 ILE427 VAL428 VAL429 GLY430 CYS431 TRP432 ALA433 THR434 MET435 VAL436 ASN437 MET438 GLY439 GLU440 ASN441 GLY442 TYR443 ILE444 GLU445 SER446 CYS447 GLN448 GLU449 ILE450 VAL451 GLY452 ALA453 ALA454 MET455 LYS456 PHE457 LYS458 LYS459 TYR460 ILE461 GLN462 GLU463 ASN464 ILE465 PRO466 ASP467 LEU468 ASP469 ILE470 MET471 GLY472 ASN473 PRO474 ARG475 TYR476 SER477 VAL478 ILE479 SER480 PHE481 SER482 SER483 LYS484 THR485 LEU486 ASN487 ILE488 HIS489 GLU490 LEU491 SER492 ASP493 ARG494 LEU495 SER496 LYS497 LYS498 GLY499 TRP500 HIS501 PHE502 ASN503 ALA504 LEU505 GLN506 LYS507 PRO508 VAL509 ALA510 LEU511 HIS512 MET513 ALA514 PHE515 THR516 ARG517 LEU518 SER519 ALA520 HIS521 VAL522 VAL523 ASP524 GLU525 ILE526 CYS527 ASP528 ILE529 LEU530 ARG531 THR532 THR533 VAL534 GLN535 GLU536 LEU537 LYS538 SER539 GLU540 ASP567 LYS568 LEU569 ILE570 VAL571 GLY572 PHE573 LEU574 ASP575 ALA576 LEU577 TYR578 LYS579
Ligands
Unit 3 PO41
Unit 4 PO41 PO42
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany