3MBI - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) FROM THERMOPLASMA VOLCANIUM IN COMPLEX WITH ADP-MG2+ AND RI PHOSPHATE
• Keywords: PHOSPHORIBOSYL TRANSFERASE, ATP ANALOG BINDING, RIBOSE 5-PHO BINDING, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3MBI	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	A	287	2270	0
2	Protein	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	B	287	2270	0
3	Protein	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	C	285	2260	0
4	Protein	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	D	285	2260	0
5	Ligand	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	A	3	0	33
6	Ligand	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	B	3	0	33
7	Ligand	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	C	3	0	33
8	Ligand	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	D	3	0	42
9	Water			1254	0	1254
total				2410	9060	1395

Proteins

Unit 1	SER -1 GLY 0 MET 1 LYS 2 ILE 3 ILE 4 ALA 5 LEU 6 ARG 7 SER 8 SER 9 LEU 10 LYS 11 LEU 12 ALA 13 ALA 14 ARG 15 ILE 16 ALA 17 GLU 18 GLU 19 LEU 20 LYS 21 THR 22 GLU 23 PRO 24 VAL 25 MET 26 PRO 27 ASP 28 GLU 29 ARG 30 ARG 31 PHE 32 PRO 33 ASP 34 GLY 35 GLU 36 LEU 37 TYR 38 LEU 39 ARG 40 TYR 41 ASP 42 GLU 43 ASP 44 LEU 45 THR 46 GLY 47 HIS 48 ASN 49 ILE 50 PHE 51 ILE 52 ILE 53 GLY 54 ASN 55 THR 56 HIS 57 SER 58 ASP 59 ALA 60 GLU 61 VAL 62 MET 63 GLU 64 MET 65 ILE 66 LEU 67 THR 68 LEU 69 SER 70 ALA 71 ILE 72 GLN 73 ASP 74 TYR 75 ARG 76 THR 77 LYS 78 SER 79 VAL 80 ASN 81 ILE 82 ILE 83 ALA 84 PRO 85 TYR 86 TYR 87 GLY 88 TYR 89 ALA 90 ARG 91 GLN 92 HIS 93 GLN 94 ARG 95 TYR 96 LYS 97 ASN 98 GLY 99 GLU 100 PRO 101 ILE 102 SER 103 SER 104 GLN 105 ILE 106 LEU 107 THR 108 GLU 109 ILE 110 TYR 111 SER 112 SER 113 TYR 114 SER 115 ASN 116 SER 117 ILE 118 ALA 119 THR 120 VAL 121 ASP 122 ILE 123 HIS 124 ASP 125 GLU 126 LYS 127 THR 128 LEU 129 SER 130 TYR 131 SER 132 LYS 133 VAL 134 LYS 135 PHE 136 SER 137 ASP 138 LEU 139 HIS 140 ALA 141 ASN 142 ASP 143 ALA 144 ILE 145 VAL 146 ARG 147 TYR 148 TYR 149 LYS 150 ASN 151 VAL 152 ASP 153 VAL 154 ASP 155 TYR 156 VAL 157 VAL 158 SER 159 PRO 160 ASP 161 ASP 162 GLY 163 GLY 164 LEU 165 ALA 166 ARG 167 VAL 168 ALA 169 ASP 170 ILE 171 SER 172 ALA 173 LYS 174 LEU 175 GLY 176 LYS 177 LYS 178 HIS 179 PHE 180 PHE 181 ILE 182 GLU 183 LYS 184 LYS 185 ARG 186 ILE 187 ASP 188 ASP 189 ARG 190 THR 191 VAL 192 GLU 193 MET 194 LYS 195 VAL 196 PRO 197 ASN 198 VAL 199 ASP 200 VAL 201 ASN 202 GLY 203 LYS 204 LYS 205 LEU 206 LEU 207 ILE 208 VAL 209 ASP 210 ASP 211 ILE 212 ILE 213 SER 214 THR 215 GLY 216 GLY 217 THR 218 ILE 219 ALA 220 LYS 221 SER 222 SER 223 GLY 224 LEU 225 LEU 226 ARG 227 GLU 228 LYS 229 GLY 230 ALA 231 SER 232 LYS 233 ILE 234 TYR 235 VAL 236 SER 237 ALA 238 VAL 239 HIS 240 GLY 241 LEU 242 PHE 243 VAL 244 ASN 245 GLY 246 SER 247 GLU 248 ASN 249 LYS 250 ILE 251 LEU 252 GLN 253 ASN 254 ALA 255 ASP 256 GLU 257 ILE 258 HIS 259 VAL 260 THR 261 ASP 262 THR 263 VAL 264 GLU 265 SER 266 LYS 267 PHE 268 SER 269 ASP 270 ILE 271 SER 272 VAL 273 TYR 274 GLN 275 GLU 276 VAL 277 CYS 278 ASN 279 TYR 280 ILE 281 ARG 282 ASP 283 ILE 284 ASP 285
Unit 2	SER -1 GLY 0 MET 1 LYS 2 ILE 3 ILE 4 ALA 5 LEU 6 ARG 7 SER 8 SER 9 LEU 10 LYS 11 LEU 12 ALA 13 ALA 14 ARG 15 ILE 16 ALA 17 GLU 18 GLU 19 LEU 20 LYS 21 THR 22 GLU 23 PRO 24 VAL 25 MET 26 PRO 27 ASP 28 GLU 29 ARG 30 ARG 31 PHE 32 PRO 33 ASP 34 GLY 35 GLU 36 LEU 37 TYR 38 LEU 39 ARG 40 TYR 41 ASP 42 GLU 43 ASP 44 LEU 45 THR 46 GLY 47 HIS 48 ASN 49 ILE 50 PHE 51 ILE 52 ILE 53 GLY 54 ASN 55 THR 56 HIS 57 SER 58 ASP 59 ALA 60 GLU 61 VAL 62 MET 63 GLU 64 MET 65 ILE 66 LEU 67 THR 68 LEU 69 SER 70 ALA 71 ILE 72 GLN 73 ASP 74 TYR 75 ARG 76 THR 77 LYS 78 SER 79 VAL 80 ASN 81 ILE 82 ILE 83 ALA 84 PRO 85 TYR 86 TYR 87 GLY 88 TYR 89 ALA 90 ARG 91 GLN 92 HIS 93 GLN 94 ARG 95 TYR 96 LYS 97 ASN 98 GLY 99 GLU 100 PRO 101 ILE 102 SER 103 SER 104 GLN 105 ILE 106 LEU 107 THR 108 GLU 109 ILE 110 TYR 111 SER 112 SER 113 TYR 114 SER 115 ASN 116 SER 117 ILE 118 ALA 119 THR 120 VAL 121 ASP 122 ILE 123 HIS 124 ASP 125 GLU 126 LYS 127 THR 128 LEU 129 SER 130 TYR 131 SER 132 LYS 133 VAL 134 LYS 135 PHE 136 SER 137 ASP 138 LEU 139 HIS 140 ALA 141 ASN 142 ASP 143 ALA 144 ILE 145 VAL 146 ARG 147 TYR 148 TYR 149 LYS 150 ASN 151 VAL 152 ASP 153 VAL 154 ASP 155 TYR 156 VAL 157 VAL 158 SER 159 PRO 160 ASP 161 ASP 162 GLY 163 GLY 164 LEU 165 ALA 166 ARG 167 VAL 168 ALA 169 ASP 170 ILE 171 SER 172 ALA 173 LYS 174 LEU 175 GLY 176 LYS 177 LYS 178 HIS 179 PHE 180 PHE 181 ILE 182 GLU 183 LYS 184 LYS 185 ARG 186 ILE 187 ASP 188 ASP 189 ARG 190 THR 191 VAL 192 GLU 193 MET 194 LYS 195 VAL 196 PRO 197 ASN 198 VAL 199 ASP 200 VAL 201 ASN 202 GLY 203 LYS 204 LYS 205 LEU 206 LEU 207 ILE 208 VAL 209 ASP 210 ASP 211 ILE 212 ILE 213 SER 214 THR 215 GLY 216 GLY 217 THR 218 ILE 219 ALA 220 LYS 221 SER 222 SER 223 GLY 224 LEU 225 LEU 226 ARG 227 GLU 228 LYS 229 GLY 230 ALA 231 SER 232 LYS 233 ILE 234 TYR 235 VAL 236 SER 237 ALA 238 VAL 239 HIS 240 GLY 241 LEU 242 PHE 243 VAL 244 ASN 245 GLY 246 SER 247 GLU 248 ASN 249 LYS 250 ILE 251 LEU 252 GLN 253 ASN 254 ALA 255 ASP 256 GLU 257 ILE 258 HIS 259 VAL 260 THR 261 ASP 262 THR 263 VAL 264 GLU 265 SER 266 LYS 267 PHE 268 SER 269 ASP 270 ILE 271 SER 272 VAL 273 TYR 274 GLN 275 GLU 276 VAL 277 CYS 278 ASN 279 TYR 280 ILE 281 ARG 282 ASP 283 ILE 284 ASP 285
Unit 3	MET 1 LYS 2 ILE 3 ILE 4 ALA 5 LEU 6 ARG 7 SER 8 SER 9 LEU 10 LYS 11 LEU 12 ALA 13 ALA 14 ARG 15 ILE 16 ALA 17 GLU 18 GLU 19 LEU 20 LYS 21 THR 22 GLU 23 PRO 24 VAL 25 MET 26 PRO 27 ASP 28 GLU 29 ARG 30 ARG 31 PHE 32 PRO 33 ASP 34 GLY 35 GLU 36 LEU 37 TYR 38 LEU 39 ARG 40 TYR 41 ASP 42 GLU 43 ASP 44 LEU 45 THR 46 GLY 47 HIS 48 ASN 49 ILE 50 PHE 51 ILE 52 ILE 53 GLY 54 ASN 55 THR 56 HIS 57 SER 58 ASP 59 ALA 60 GLU 61 VAL 62 MET 63 GLU 64 MET 65 ILE 66 LEU 67 THR 68 LEU 69 SER 70 ALA 71 ILE 72 GLN 73 ASP 74 TYR 75 ARG 76 THR 77 LYS 78 SER 79 VAL 80 ASN 81 ILE 82 ILE 83 ALA 84 PRO 85 TYR 86 TYR 87 GLY 88 TYR 89 ALA 90 ARG 91 GLN 92 HIS 93 GLN 94 ARG 95 TYR 96 LYS 97 ASN 98 GLY 99 GLU 100 PRO 101 ILE 102 SER 103 SER 104 GLN 105 ILE 106 LEU 107 THR 108 GLU 109 ILE 110 TYR 111 SER 112 SER 113 TYR 114 SER 115 ASN 116 SER 117 ILE 118 ALA 119 THR 120 VAL 121 ASP 122 ILE 123 HIS 124 ASP 125 GLU 126 LYS 127 THR 128 LEU 129 SER 130 TYR 131 SER 132 LYS 133 VAL 134 LYS 135 PHE 136 SER 137 ASP 138 LEU 139 HIS 140 ALA 141 ASN 142 ASP 143 ALA 144 ILE 145 VAL 146 ARG 147 TYR 148 TYR 149 LYS 150 ASN 151 VAL 152 ASP 153 VAL 154 ASP 155 TYR 156 VAL 157 VAL 158 SER 159 PRO 160 ASP 161 ASP 162 GLY 163 GLY 164 LEU 165 ALA 166 ARG 167 VAL 168 ALA 169 ASP 170 ILE 171 SER 172 ALA 173 LYS 174 LEU 175 GLY 176 LYS 177 LYS 178 HIS 179 PHE 180 PHE 181 ILE 182 GLU 183 LYS 184 LYS 185 ARG 186 ILE 187 ASP 188 ASP 189 ARG 190 THR 191 VAL 192 GLU 193 MET 194 LYS 195 VAL 196 PRO 197 ASN 198 VAL 199 ASP 200 VAL 201 ASN 202 GLY 203 LYS 204 LYS 205 LEU 206 LEU 207 ILE 208 VAL 209 ASP 210 ASP 211 ILE 212 ILE 213 SER 214 THR 215 GLY 216 GLY 217 THR 218 ILE 219 ALA 220 LYS 221 SER 222 SER 223 GLY 224 LEU 225 LEU 226 ARG 227 GLU 228 LYS 229 GLY 230 ALA 231 SER 232 LYS 233 ILE 234 TYR 235 VAL 236 SER 237 ALA 238 VAL 239 HIS 240 GLY 241 LEU 242 PHE 243 VAL 244 ASN 245 GLY 246 SER 247 GLU 248 ASN 249 LYS 250 ILE 251 LEU 252 GLN 253 ASN 254 ALA 255 ASP 256 GLU 257 ILE 258 HIS 259 VAL 260 THR 261 ASP 262 THR 263 VAL 264 GLU 265 SER 266 LYS 267 PHE 268 SER 269 ASP 270 ILE 271 SER 272 VAL 273 TYR 274 GLN 275 GLU 276 VAL 277 CYS 278 ASN 279 TYR 280 ILE 281 ARG 282 ASP 283 ILE 284 ASP 285
Unit 4	MET 1 LYS 2 ILE 3 ILE 4 ALA 5 LEU 6 ARG 7 SER 8 SER 9 LEU 10 LYS 11 LEU 12 ALA 13 ALA 14 ARG 15 ILE 16 ALA 17 GLU 18 GLU 19 LEU 20 LYS 21 THR 22 GLU 23 PRO 24 VAL 25 MET 26 PRO 27 ASP 28 GLU 29 ARG 30 ARG 31 PHE 32 PRO 33 ASP 34 GLY 35 GLU 36 LEU 37 TYR 38 LEU 39 ARG 40 TYR 41 ASP 42 GLU 43 ASP 44 LEU 45 THR 46 GLY 47 HIS 48 ASN 49 ILE 50 PHE 51 ILE 52 ILE 53 GLY 54 ASN 55 THR 56 HIS 57 SER 58 ASP 59 ALA 60 GLU 61 VAL 62 MET 63 GLU 64 MET 65 ILE 66 LEU 67 THR 68 LEU 69 SER 70 ALA 71 ILE 72 GLN 73 ASP 74 TYR 75 ARG 76 THR 77 LYS 78 SER 79 VAL 80 ASN 81 ILE 82 ILE 83 ALA 84 PRO 85 TYR 86 TYR 87 GLY 88 TYR 89 ALA 90 ARG 91 GLN 92 HIS 93 GLN 94 ARG 95 TYR 96 LYS 97 ASN 98 GLY 99 GLU 100 PRO 101 ILE 102 SER 103 SER 104 GLN 105 ILE 106 LEU 107 THR 108 GLU 109 ILE 110 TYR 111 SER 112 SER 113 TYR 114 SER 115 ASN 116 SER 117 ILE 118 ALA 119 THR 120 VAL 121 ASP 122 ILE 123 HIS 124 ASP 125 GLU 126 LYS 127 THR 128 LEU 129 SER 130 TYR 131 SER 132 LYS 133 VAL 134 LYS 135 PHE 136 SER 137 ASP 138 LEU 139 HIS 140 ALA 141 ASN 142 ASP 143 ALA 144 ILE 145 VAL 146 ARG 147 TYR 148 TYR 149 LYS 150 ASN 151 VAL 152 ASP 153 VAL 154 ASP 155 TYR 156 VAL 157 VAL 158 SER 159 PRO 160 ASP 161 ASP 162 GLY 163 GLY 164 LEU 165 ALA 166 ARG 167 VAL 168 ALA 169 ASP 170 ILE 171 SER 172 ALA 173 LYS 174 LEU 175 GLY 176 LYS 177 LYS 178 HIS 179 PHE 180 PHE 181 ILE 182 GLU 183 LYS 184 LYS 185 ARG 186 ILE 187 ASP 188 ASP 189 ARG 190 THR 191 VAL 192 GLU 193 MET 194 LYS 195 VAL 196 PRO 197 ASN 198 VAL 199 ASP 200 VAL 201 ASN 202 GLY 203 LYS 204 LYS 205 LEU 206 LEU 207 ILE 208 VAL 209 ASP 210 ASP 211 ILE 212 ILE 213 SER 214 THR 215 GLY 216 GLY 217 THR 218 ILE 219 ALA 220 LYS 221 SER 222 SER 223 GLY 224 LEU 225 LEU 226 ARG 227 GLU 228 LYS 229 GLY 230 ALA 231 SER 232 LYS 233 ILE 234 TYR 235 VAL 236 SER 237 ALA 238 VAL 239 HIS 240 GLY 241 LEU 242 PHE 243 VAL 244 ASN 245 GLY 246 SER 247 GLU 248 ASN 249 LYS 250 ILE 251 LEU 252 GLN 253 ASN 254 ALA 255 ASP 256 GLU 257 ILE 258 HIS 259 VAL 260 THR 261 ASP 262 THR 263 VAL 264 GLU 265 SER 266 LYS 267 PHE 268 SER 269 ASP 270 ILE 271 SER 272 VAL 273 TYR 274 GLN 275 GLU 276 VAL 277 CYS 278 ASN 279 TYR 280 ILE 281 ARG 282 ASP 283 ILE 284 ASP 285

Ligands

Unit 5	PO4 286 MG 287 ADP 288
Unit 6	PO4 286 MG 287 ADP 288
Unit 7	ADP 286 PO4 287 MG 289
Unit 8	HSX 286 MG 287 ADP 288