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Sequence, Chains, Asymmetric and Biological Units

Title CLOSED LIGANDED CRYSTAL STRUCTURE OF XYLOSE BINDING PROTEIN ESCHERICHIA COLI
Keywords XYLOSE BINDING PROTEIN, XYLOSE, CONFORMATIONAL CHANGES, SUGA PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3MA0     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D-XYLOSE-BINDING PERIPLASMIC PROTEIN  A 313 2396 0
2  Protein   D-XYLOSE-BINDING PERIPLASMIC PROTEIN  B 306 2327 0
3  Protein   D-XYLOSE-BINDING PERIPLASMIC PROTEIN  C 306 2327 0
4  Ligand   D-XYLOSE-BINDING PERIPLASMIC PROTEIN  A 1 0 10
5  Ligand   D-XYLOSE-BINDING PERIPLASMIC PROTEIN  B 1 0 10
6  Ligand   D-XYLOSE-BINDING PERIPLASMIC PROTEIN  C 1 0 10
7 Water     463 0 463
total       1391 7050 493

Proteins
Unit 1 LYS1 GLU2 VAL3 LYS4 ILE5 GLY6 MET7 ALA8 ILE9 ASP10 ASP11 LEU12 ARG13 LEU14 GLU15 ARG16 TRP17 GLN18 LYS19 ASP20 ARG21 ASP22 ILE23 PHE24 VAL25 LYS26 LYS27 ALA28 GLU29 SER30 LEU31 GLY32 ALA33 LYS34 VAL35 PHE36 VAL37 GLN38 SER39 ALA40 ASN41 GLY42 ASN43 GLU44 GLU45 THR46 GLN47 MET48 SER49 GLN50 ILE51 GLU52 ASN53 MET54 ILE55 ASN56 ARG57 GLY58 VAL59 ASP60 VAL61 LEU62 VAL63 ILE64 ILE65 PRO66 TYR67 ASN68 GLY69 GLN70 VAL71 LEU72 SER73 ASN74 VAL75 VAL76 LYS77 GLU78 ALA79 LYS80 GLN81 GLU82 GLY83 ILE84 LYS85 VAL86 LEU87 ALA88 TYR89 ASP90 ARG91 MET92 ILE93 ASN94 ASP95 ALA96 ASP97 ILE98 ASP99 PHE100 TYR101 ILE102 SER103 PHE104 ASP105 ASN106 GLU107 LYS108 VAL109 GLY110 GLU111 LEU112 GLN113 ALA114 LYS115 ALA116 LEU117 VAL118 ASP119 ILE120 VAL121 PRO122 GLN123 GLY124 ASN125 TYR126 PHE127 LEU128 MET129 GLY130 GLY131 SER132 PRO133 VAL134 ASP135 ASN136 ASN137 ALA138 LYS139 LEU140 PHE141 ARG142 ALA143 GLY144 GLN145 MET146 LYS147 VAL148 LEU149 LYS150 PRO151 TYR152 VAL153 ASP154 SER155 GLY156 LYS157 ILE158 LYS159 VAL160 VAL161 GLY162 ASP163 GLN164 TRP165 VAL166 ASP167 GLY168 TRP169 LEU170 PRO171 GLU172 ASN173 ALA174 LEU175 LYS176 ILE177 MET178 GLU179 ASN180 ALA181 LEU182 THR183 ALA184 ASN185 ASN186 ASN187 LYS188 ILE189 ASP190 ALA191 VAL192 VAL193 ALA194 SER195 ASN196 ASP197 ALA198 THR199 ALA200 GLY201 GLY202 ALA203 ILE204 GLN205 ALA206 LEU207 SER208 ALA209 GLN210 GLY211 LEU212 SER213 GLY214 LYS215 VAL216 ALA217 ILE218 SER219 GLY220 GLN221 ASP222 ALA223 ASP224 LEU225 ALA226 GLY227 ILE228 LYS229 ARG230 ILE231 ALA232 ALA233 GLY234 THR235 GLN236 THR237 MET238 THR239 VAL240 TYR241 LYS242 PRO243 ILE244 THR245 LEU246 LEU247 ALA248 ASN249 THR250 ALA251 ALA252 GLU253 ILE254 ALA255 VAL256 GLU257 LEU258 GLY259 ASN260 GLY261 GLN262 GLU263 PRO264 LYS265 ALA266 ASP267 THR268 THR269 LEU270 ASN271 ASN272 GLY273 LEU274 LYS275 ASP276 VAL277 PRO278 SER279 ARG280 LEU281 LEU282 THR283 PRO284 ILE285 ASP286 VAL287 ASN288 LYS289 ASN290 ASN291 ILE292 LYS293 ASP294 THR295 VAL296 ILE297 LYS298 ASP299 GLY300 PHE301 HIS302 LYS303 GLU304 SER305 GLU306 LEU307 HIS308 HIS309 HIS310 HIS311 HIS312 HIS313
Unit 2 GLU2 VAL3 LYS4 ILE5 GLY6 MET7 ALA8 ILE9 ASP10 ASP11 LEU12 ARG13 LEU14 GLU15 ARG16 TRP17 GLN18 LYS19 ASP20 ARG21 ASP22 ILE23 PHE24 VAL25 LYS26 LYS27 ALA28 GLU29 SER30 LEU31 GLY32 ALA33 LYS34 VAL35 PHE36 VAL37 GLN38 SER39 ALA40 ASN41 GLY42 ASN43 GLU44 GLU45 THR46 GLN47 MET48 SER49 GLN50 ILE51 GLU52 ASN53 MET54 ILE55 ASN56 ARG57 GLY58 VAL59 ASP60 VAL61 LEU62 VAL63 ILE64 ILE65 PRO66 TYR67 ASN68 GLY69 GLN70 VAL71 LEU72 SER73 ASN74 VAL75 VAL76 LYS77 GLU78 ALA79 LYS80 GLN81 GLU82 GLY83 ILE84 LYS85 VAL86 LEU87 ALA88 TYR89 ASP90 ARG91 MET92 ILE93 ASN94 ASP95 ALA96 ASP97 ILE98 ASP99 PHE100 TYR101 ILE102 SER103 PHE104 ASP105 ASN106 GLU107 LYS108 VAL109 GLY110 GLU111 LEU112 GLN113 ALA114 LYS115 ALA116 LEU117 VAL118 ASP119 ILE120 VAL121 PRO122 GLN123 GLY124 ASN125 TYR126 PHE127 LEU128 MET129 GLY130 GLY131 SER132 PRO133 VAL134 ASP135 ASN136 ASN137 ALA138 LYS139 LEU140 PHE141 ARG142 ALA143 GLY144 GLN145 MET146 LYS147 VAL148 LEU149 LYS150 PRO151 TYR152 VAL153 ASP154 SER155 GLY156 LYS157 ILE158 LYS159 VAL160 VAL161 GLY162 ASP163 GLN164 TRP165 VAL166 ASP167 GLY168 TRP169 LEU170 PRO171 GLU172 ASN173 ALA174 LEU175 LYS176 ILE177 MET178 GLU179 ASN180 ALA181 LEU182 THR183 ALA184 ASN185 ASN186 ASN187 LYS188 ILE189 ASP190 ALA191 VAL192 VAL193 ALA194 SER195 ASN196 ASP197 ALA198 THR199 ALA200 GLY201 GLY202 ALA203 ILE204 GLN205 ALA206 LEU207 SER208 ALA209 GLN210 GLY211 LEU212 SER213 GLY214 LYS215 VAL216 ALA217 ILE218 SER219 GLY220 GLN221 ASP222 ALA223 ASP224 LEU225 ALA226 GLY227 ILE228 LYS229 ARG230 ILE231 ALA232 ALA233 GLY234 THR235 GLN236 THR237 MET238 THR239 VAL240 TYR241 LYS242 PRO243 ILE244 THR245 LEU246 LEU247 ALA248 ASN249 THR250 ALA251 ALA252 GLU253 ILE254 ALA255 VAL256 GLU257 LEU258 GLY259 ASN260 GLY261 GLN262 GLU263 PRO264 LYS265 ALA266 ASP267 THR268 THR269 LEU270 ASN271 ASN272 GLY273 LEU274 LYS275 ASP276 VAL277 PRO278 SER279 ARG280 LEU281 LEU282 THR283 PRO284 ILE285 ASP286 VAL287 ASN288 LYS289 ASN290 ASN291 ILE292 LYS293 ASP294 THR295 VAL296 ILE297 LYS298 ASP299 GLY300 PHE301 HIS302 LYS303 GLU304 SER305 GLU306 LEU307
Unit 3 GLU2 VAL3 LYS4 ILE5 GLY6 MET7 ALA8 ILE9 ASP10 ASP11 LEU12 ARG13 LEU14 GLU15 ARG16 TRP17 GLN18 LYS19 ASP20 ARG21 ASP22 ILE23 PHE24 VAL25 LYS26 LYS27 ALA28 GLU29 SER30 LEU31 GLY32 ALA33 LYS34 VAL35 PHE36 VAL37 GLN38 SER39 ALA40 ASN41 GLY42 ASN43 GLU44 GLU45 THR46 GLN47 MET48 SER49 GLN50 ILE51 GLU52 ASN53 MET54 ILE55 ASN56 ARG57 GLY58 VAL59 ASP60 VAL61 LEU62 VAL63 ILE64 ILE65 PRO66 TYR67 ASN68 GLY69 GLN70 VAL71 LEU72 SER73 ASN74 VAL75 VAL76 LYS77 GLU78 ALA79 LYS80 GLN81 GLU82 GLY83 ILE84 LYS85 VAL86 LEU87 ALA88 TYR89 ASP90 ARG91 MET92 ILE93 ASN94 ASP95 ALA96 ASP97 ILE98 ASP99 PHE100 TYR101 ILE102 SER103 PHE104 ASP105 ASN106 GLU107 LYS108 VAL109 GLY110 GLU111 LEU112 GLN113 ALA114 LYS115 ALA116 LEU117 VAL118 ASP119 ILE120 VAL121 PRO122 GLN123 GLY124 ASN125 TYR126 PHE127 LEU128 MET129 GLY130 GLY131 SER132 PRO133 VAL134 ASP135 ASN136 ASN137 ALA138 LYS139 LEU140 PHE141 ARG142 ALA143 GLY144 GLN145 MET146 LYS147 VAL148 LEU149 LYS150 PRO151 TYR152 VAL153 ASP154 SER155 GLY156 LYS157 ILE158 LYS159 VAL160 VAL161 GLY162 ASP163 GLN164 TRP165 VAL166 ASP167 GLY168 TRP169 LEU170 PRO171 GLU172 ASN173 ALA174 LEU175 LYS176 ILE177 MET178 GLU179 ASN180 ALA181 LEU182 THR183 ALA184 ASN185 ASN186 ASN187 LYS188 ILE189 ASP190 ALA191 VAL192 VAL193 ALA194 SER195 ASN196 ASP197 ALA198 THR199 ALA200 GLY201 GLY202 ALA203 ILE204 GLN205 ALA206 LEU207 SER208 ALA209 GLN210 GLY211 LEU212 SER213 GLY214 LYS215 VAL216 ALA217 ILE218 SER219 GLY220 GLN221 ASP222 ALA223 ASP224 LEU225 ALA226 GLY227 ILE228 LYS229 ARG230 ILE231 ALA232 ALA233 GLY234 THR235 GLN236 THR237 MET238 THR239 VAL240 TYR241 LYS242 PRO243 ILE244 THR245 LEU246 LEU247 ALA248 ASN249 THR250 ALA251 ALA252 GLU253 ILE254 ALA255 VAL256 GLU257 LEU258 GLY259 ASN260 GLY261 GLN262 GLU263 PRO264 LYS265 ALA266 ASP267 THR268 THR269 LEU270 ASN271 ASN272 GLY273 LEU274 LYS275 ASP276 VAL277 PRO278 SER279 ARG280 LEU281 LEU282 THR283 PRO284 ILE285 ASP286 VAL287 ASN288 LYS289 ASN290 ASN291 ILE292 LYS293 ASP294 THR295 VAL296 ILE297 LYS298 ASP299 GLY300 PHE301 HIS302 LYS303 GLU304 SER305 GLU306 LEU307

Ligands
Unit 4 XYP400
Unit 5 XYP401
Unit 6 XYP402

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany