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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GERANYLGERANYL PYROPHOSPHATE SYNTHASE F LACTOBACILLUS BREVIS ATCC 367
Keywords ISOPRENYL DIPHOSPHATE SYNTHASE, STRUCTURAL GENOMICS, PSI, PR STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, ISOPRENE BIOSYNTHESIS, TRANSFERASE, NE SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3M9U     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FARNESYL-DIPHOSPHATE SYNTHASE  A 288 2181 0
2  Protein   FARNESYL-DIPHOSPHATE SYNTHASE  B 285 2160 0
3  Protein   FARNESYL-DIPHOSPHATE SYNTHASE  C 284 2149 0
4  Protein   FARNESYL-DIPHOSPHATE SYNTHASE  D 288 2177 0
5  Ligand   FARNESYL-DIPHOSPHATE SYNTHASE  A 6 0 36
6  Ligand   FARNESYL-DIPHOSPHATE SYNTHASE  B 2 0 12
7  Ligand   FARNESYL-DIPHOSPHATE SYNTHASE  C 6 0 36
8  Ligand   FARNESYL-DIPHOSPHATE SYNTHASE  D 8 0 48
9 Water     708 0 708
total       1875 8667 840

Proteins
Unit 1 SER1 LEU2 ILE3 ASN4 ALA5 ARG6 LEU7 ILE8 ALA9 PHE10 GLU11 ASP12 GLN13 TRP14 VAL15 PRO16 ALA17 LEU18 ASN19 ALA20 PRO21 LEU22 LYS23 GLN24 ALA25 ILE26 LEU27 ALA28 ASP29 SER30 GLN31 ASP32 ALA33 GLN34 LEU35 ALA36 ALA37 ALA38 MET39 THR40 TYR41 SER42 VAL43 LEU44 ALA45 GLY46 GLY47 LYS48 ARG49 LEU50 ARG51 PRO52 LEU53 LEU54 THR55 VAL56 ALA57 THR58 MET59 GLN60 SER61 LEU62 GLY63 VAL64 THR65 PHE66 VAL67 PRO68 GLU69 ARG70 HIS71 TRP72 ARG73 PRO74 VAL75 MET76 ALA77 LEU78 GLU79 LEU80 LEU81 HIS82 THR83 TYR84 SER85 LEU86 ILE87 HIS88 ASP89 ASP90 LEU91 PRO92 ALA93 MET94 ASP95 ASN96 ASP97 ALA98 LEU99 ARG100 ARG101 GLY102 GLU103 PRO104 THR105 ASN106 HIS107 VAL108 LYS109 PHE110 GLY111 ALA112 GLY113 MET114 ALA115 THR116 LEU117 ALA118 GLY119 ASP120 GLY121 LEU122 LEU123 THR124 LEU125 ALA126 PHE127 GLN128 TRP129 LEU130 THR131 ALA132 THR133 ASP134 LEU135 PRO136 ALA137 THR138 MET139 GLN140 ALA141 ALA142 LEU143 VAL144 GLN145 ALA146 LEU147 ALA148 THR149 ALA150 ALA151 GLY152 PRO153 SER154 GLY155 MET156 VAL157 ALA158 GLY159 GLN160 ALA161 LYS162 ASP163 ILE164 GLN165 SER166 GLU167 HIS168 VAL169 ASN170 LEU171 PRO172 LEU173 SER174 GLN175 LEU176 ARG177 VAL178 LEU179 HIS180 LYS181 GLU182 LYS183 THR184 GLY185 ALA186 LEU187 LEU188 HIS189 TYR190 ALA191 VAL192 GLN193 ALA194 GLY195 LEU196 ILE197 LEU198 GLY199 GLN200 ALA201 PRO202 GLU203 ALA204 GLN205 TRP206 PRO207 ALA208 TYR209 LEU210 GLN211 PHE212 ALA213 ASP214 ALA215 PHE216 GLY217 LEU218 ALA219 PHE220 GLN221 ILE222 TYR223 ASP224 ASP225 ILE226 LEU227 ASP228 VAL229 VAL230 SER231 SER232 ASP245 GLU246 ALA247 LYS248 ASN249 THR250 TYR251 PRO252 GLY253 LYS254 LEU255 GLY256 LEU257 ILE258 GLY259 ALA260 ASN261 GLN262 ALA263 LEU264 ILE265 ASP266 THR267 ILE268 HIS269 SER270 GLY271 GLN272 ALA273 ALA274 LEU275 GLN276 GLY277 LEU278 PRO279 THR280 SER281 THR282 GLN283 ARG284 ASP285 ASP286 LEU287 ALA288 ALA289 PHE290 PHE291 SER292 TYR293 PHE294 ASP295 THR296 GLU297 ARG298 VAL299 ASN300
Unit 2 SER1 LEU2 ILE3 ASN4 ALA5 ARG6 LEU7 ILE8 ALA9 PHE10 GLU11 ASP12 GLN13 TRP14 VAL15 PRO16 ALA17 LEU18 ASN19 ALA20 PRO21 LEU22 LYS23 GLN24 ALA25 ILE26 LEU27 ALA28 ASP29 SER30 GLN31 ASP32 ALA33 GLN34 LEU35 ALA36 ALA37 ALA38 MET39 THR40 TYR41 SER42 VAL43 LEU44 ALA45 GLY46 GLY47 LYS48 ARG49 LEU50 ARG51 PRO52 LEU53 LEU54 THR55 VAL56 ALA57 THR58 MET59 GLN60 SER61 LEU62 GLY63 VAL64 THR65 PHE66 VAL67 PRO68 GLU69 ARG70 HIS71 TRP72 ARG73 PRO74 VAL75 MET76 ALA77 LEU78 GLU79 LEU80 LEU81 HIS82 THR83 TYR84 SER85 LEU86 ILE87 HIS88 ASP89 ASP90 LEU91 PRO92 ALA93 MET94 ASP95 ASN96 ASP97 ALA98 LEU99 ARG100 ARG101 GLY102 GLU103 PRO104 THR105 ASN106 HIS107 VAL108 LYS109 PHE110 GLY111 ALA112 GLY113 MET114 ALA115 THR116 LEU117 ALA118 GLY119 ASP120 GLY121 LEU122 LEU123 THR124 LEU125 ALA126 PHE127 GLN128 TRP129 LEU130 THR131 ALA132 THR133 ASP134 LEU135 PRO136 ALA137 THR138 MET139 GLN140 ALA141 ALA142 LEU143 VAL144 GLN145 ALA146 LEU147 ALA148 THR149 ALA150 ALA151 GLY152 PRO153 SER154 GLY155 MET156 VAL157 ALA158 GLY159 GLN160 ALA161 LYS162 ASP163 ILE164 GLN165 SER166 GLU167 HIS168 VAL169 ASN170 LEU171 PRO172 LEU173 SER174 GLN175 LEU176 ARG177 VAL178 LEU179 HIS180 LYS181 GLU182 LYS183 THR184 GLY185 ALA186 LEU187 LEU188 HIS189 TYR190 ALA191 VAL192 GLN193 ALA194 GLY195 LEU196 ILE197 LEU198 GLY199 GLN200 ALA201 PRO202 GLU203 ALA204 GLN205 TRP206 PRO207 ALA208 TYR209 LEU210 GLN211 PHE212 ALA213 ASP214 ALA215 PHE216 GLY217 LEU218 ALA219 PHE220 GLN221 ILE222 TYR223 ASP224 ASP225 ILE226 LEU227 ASP228 VAL229 VAL230 SER231 ASP245 GLU246 ALA247 LYS248 ASN249 THR250 TYR251 PRO252 GLY253 LYS254 LEU255 GLY256 LEU257 ILE258 GLY259 ALA260 ASN261 GLN262 ALA263 LEU264 ILE265 ASP266 THR267 ILE268 HIS269 SER270 GLY271 GLN272 ALA273 ALA274 LEU275 GLN276 GLY277 LEU278 PRO279 THR280 SER281 THR282 GLN283 ARG284 ASP285 ASP286 LEU287 ALA288 ALA289 PHE290 PHE291 SER292 TYR293 PHE294 ASP295 THR296 GLU297 ARG298
Unit 3 SER1 LEU2 ILE3 ASN4 ALA5 ARG6 LEU7 ILE8 ALA9 PHE10 GLU11 ASP12 GLN13 TRP14 VAL15 PRO16 ALA17 LEU18 ASN19 ALA20 PRO21 LEU22 LYS23 GLN24 ALA25 ILE26 LEU27 ALA28 ASP29 SER30 GLN31 ASP32 ALA33 GLN34 LEU35 ALA36 ALA37 ALA38 MET39 THR40 TYR41 SER42 VAL43 LEU44 ALA45 GLY46 GLY47 LYS48 ARG49 LEU50 ARG51 PRO52 LEU53 LEU54 THR55 VAL56 ALA57 THR58 MET59 GLN60 SER61 LEU62 GLY63 VAL64 THR65 PHE66 VAL67 PRO68 GLU69 ARG70 HIS71 TRP72 ARG73 PRO74 VAL75 MET76 ALA77 LEU78 GLU79 LEU80 LEU81 HIS82 THR83 TYR84 SER85 LEU86 ILE87 HIS88 ASP89 ASP90 LEU91 PRO92 ALA93 MET94 ASP95 ASN96 ASP97 ALA98 LEU99 ARG100 ARG101 GLY102 GLU103 PRO104 THR105 ASN106 HIS107 VAL108 LYS109 PHE110 GLY111 ALA112 GLY113 MET114 ALA115 THR116 LEU117 ALA118 GLY119 ASP120 GLY121 LEU122 LEU123 THR124 LEU125 ALA126 PHE127 GLN128 TRP129 LEU130 THR131 ALA132 THR133 ASP134 LEU135 PRO136 ALA137 THR138 MET139 GLN140 ALA141 ALA142 LEU143 VAL144 GLN145 ALA146 LEU147 ALA148 THR149 ALA150 ALA151 GLY152 PRO153 SER154 GLY155 MET156 VAL157 ALA158 GLY159 GLN160 ALA161 LYS162 ASP163 ILE164 GLN165 SER166 GLU167 HIS168 VAL169 ASN170 LEU171 PRO172 LEU173 SER174 GLN175 LEU176 ARG177 VAL178 LEU179 HIS180 LYS181 GLU182 LYS183 THR184 GLY185 ALA186 LEU187 LEU188 HIS189 TYR190 ALA191 VAL192 GLN193 ALA194 GLY195 LEU196 ILE197 LEU198 GLY199 GLN200 ALA201 PRO202 GLU203 ALA204 GLN205 TRP206 PRO207 ALA208 TYR209 LEU210 GLN211 PHE212 ALA213 ASP214 ALA215 PHE216 GLY217 LEU218 ALA219 PHE220 GLN221 ILE222 TYR223 ASP224 ASP225 ILE226 LEU227 ASP228 VAL229 VAL230 SER231 SER232 ALA247 LYS248 ASN249 THR250 TYR251 PRO252 GLY253 LYS254 LEU255 GLY256 LEU257 ILE258 GLY259 ALA260 ASN261 GLN262 ALA263 LEU264 ILE265 ASP266 THR267 ILE268 HIS269 SER270 GLY271 GLN272 ALA273 ALA274 LEU275 GLN276 GLY277 LEU278 PRO279 THR280 SER281 THR282 GLN283 ARG284 ASP285 ASP286 LEU287 ALA288 ALA289 PHE290 PHE291 SER292 TYR293 PHE294 ASP295 THR296 GLU297 ARG298
Unit 4 SER1 LEU2 ILE3 ASN4 ALA5 ARG6 LEU7 ILE8 ALA9 PHE10 GLU11 ASP12 GLN13 TRP14 VAL15 PRO16 ALA17 LEU18 ASN19 ALA20 PRO21 LEU22 LYS23 GLN24 ALA25 ILE26 LEU27 ALA28 ASP29 SER30 GLN31 ASP32 ALA33 GLN34 LEU35 ALA36 ALA37 ALA38 MET39 THR40 TYR41 SER42 VAL43 LEU44 ALA45 GLY46 GLY47 LYS48 ARG49 LEU50 ARG51 PRO52 LEU53 LEU54 THR55 VAL56 ALA57 THR58 MET59 GLN60 SER61 LEU62 GLY63 VAL64 THR65 PHE66 VAL67 PRO68 GLU69 ARG70 HIS71 TRP72 ARG73 PRO74 VAL75 MET76 ALA77 LEU78 GLU79 LEU80 LEU81 HIS82 THR83 TYR84 SER85 LEU86 ILE87 HIS88 ASP89 ASP90 LEU91 PRO92 ALA93 MET94 ASP95 ASN96 ASP97 ALA98 LEU99 ARG100 ARG101 GLY102 GLU103 PRO104 THR105 ASN106 HIS107 VAL108 LYS109 PHE110 GLY111 ALA112 GLY113 MET114 ALA115 THR116 LEU117 ALA118 GLY119 ASP120 GLY121 LEU122 LEU123 THR124 LEU125 ALA126 PHE127 GLN128 TRP129 LEU130 THR131 ALA132 THR133 ASP134 LEU135 PRO136 ALA137 THR138 MET139 GLN140 ALA141 ALA142 LEU143 VAL144 GLN145 ALA146 LEU147 ALA148 THR149 ALA150 ALA151 GLY152 PRO153 SER154 GLY155 MET156 VAL157 ALA158 GLY159 GLN160 ALA161 LYS162 ASP163 ILE164 GLN165 SER166 GLU167 HIS168 VAL169 ASN170 LEU171 PRO172 LEU173 SER174 GLN175 LEU176 ARG177 VAL178 LEU179 HIS180 LYS181 GLU182 LYS183 THR184 GLY185 ALA186 LEU187 LEU188 HIS189 TYR190 ALA191 VAL192 GLN193 ALA194 GLY195 LEU196 ILE197 LEU198 GLY199 GLN200 ALA201 PRO202 GLU203 ALA204 GLN205 TRP206 PRO207 ALA208 TYR209 LEU210 GLN211 PHE212 ALA213 ASP214 ALA215 PHE216 GLY217 LEU218 ALA219 PHE220 GLN221 ILE222 TYR223 ASP224 ASP225 ILE226 LEU227 ASP228 VAL229 VAL230 SER231 SER232 PRO233 ALA234 GLU246 ALA247 LYS248 ASN249 THR250 TYR251 PRO252 GLY253 LYS254 LEU255 GLY256 LEU257 ILE258 GLY259 ALA260 ASN261 GLN262 ALA263 LEU264 ILE265 ASP266 THR267 ILE268 HIS269 SER270 GLY271 GLN272 ALA273 ALA274 LEU275 GLN276 GLY277 LEU278 PRO279 THR280 SER281 THR282 GLN283 ARG284 ASP285 ASP286 LEU287 ALA288 ALA289 PHE290 PHE291 SER292 TYR293 PHE294 ASP295 THR296 GLU297 ARG298 VAL299

Ligands
Unit 5 GOL309 GOL310 GOL311 GOL312 GOL313 GOL314
Unit 6 GOL309 GOL310
Unit 7 GOL309 GOL310 GOL311 GOL312 GOL313 GOL314
Unit 8 GOL309 GOL310 GOL311 GOL312 GOL313 GOL314 GOL315 GOL316

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany