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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF UFD2 IN COMPLEX WITH THE UBIQUITIN-LIKE DOMAIN OF RAD23
Keywords ARMADILLO-LIKE REPEATS, UBL CONJUGATION PATHWAY, DNA DAMAGE, REPAIR, NUCLEUS, PHOSPHOPROTEIN, LIGASE-PROTEIN BINDING COM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3M62     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN CONJUGATION FACTOR E4  A 955 7712 0
2  Protein   UV EXCISION REPAIR PROTEIN RAD23  B 72 560 0
3  Ligand   UBIQUITIN CONJUGATION FACTOR E4  A 2 0 17
4 Water     298 0 298
total       1327 8272 315
Proteins
Unit 1 SER-5 PRO-4 GLU-3 PHE-2 ARG-1 SER0 MET1 THR2 ALA3 ILE4 GLU5 ASP6 ILE7 LEU8 GLN9 ILE10 THR11 THR12 ASP13 PRO14 SER15 ASP16 THR17 ARG18 GLY19 TYR20 SER21 LEU22 LEU23 LYS24 SER25 GLU26 GLU27 VAL28 PRO29 GLN30 GLY31 SER32 THR33 LEU34 GLY35 VAL36 ASP37 PHE38 ILE39 ASP40 THR41 LEU42 LEU43 LEU44 TYR45 GLN46 LEU47 THR48 GLU49 ASN50 GLU51 LYS52 LEU53 ASP54 LYS55 PRO56 PHE57 GLU58 TYR59 LEU60 ASN61 ASP62 CYS63 PHE64 ARG65 ARG66 ASN67 GLN68 GLN69 GLN70 LYS71 ARG72 ILE73 THR74 LYS75 ASN76 LYS77 PRO78 ASN79 ALA80 GLU81 SER82 LEU83 HIS84 SER85 THR86 PHE87 GLN88 GLU89 ILE90 ASP91 ARG92 LEU93 VAL94 ILE95 GLY96 TYR97 GLY98 VAL99 VAL100 ALA101 LEU102 GLN103 ILE104 GLU105 ASN106 PHE107 CYS108 MET109 ASN110 GLY111 ALA112 PHE113 ILE114 ASN115 TYR116 ILE117 THR118 GLY119 ILE120 VAL121 SER122 ASN123 VAL124 ASN125 SER126 TYR127 THR128 ASP129 PHE130 LEU131 SER132 GLN133 ILE134 ILE135 GLN136 ARG137 ALA138 ILE139 LEU140 GLU141 GLY142 THR143 ALA144 LEU145 ASP146 LEU147 LEU148 ASN149 ALA150 VAL151 PHE152 PRO153 THR154 LEU155 LEU156 GLU157 TYR158 CYS159 ASN160 LYS161 HIS162 VAL163 SER164 HIS165 PHE166 ASP167 LEU168 ASN169 GLU170 SER171 VAL172 ILE173 TYR174 ASN175 ASN176 VAL177 LEU178 THR179 ILE180 PHE181 GLU182 LEU183 PHE184 VAL185 THR186 PHE187 LYS188 PRO189 ILE190 ALA191 GLU192 ILE193 PHE194 THR195 LYS196 ILE197 ASP198 GLY199 PHE200 PHE201 ALA202 ASP203 TYR204 SER205 CYS206 LYS207 PRO208 GLN209 ASP210 PHE211 GLU212 ARG213 LYS214 THR215 ILE216 LEU217 GLY218 PRO219 ILE220 LEU221 SER222 LEU223 SER224 PRO225 ILE226 GLU227 ALA228 ALA229 VAL230 ALA231 ILE232 ARG233 ASN234 TYR235 GLY236 ASP237 ASN238 LEU239 LEU240 ARG241 SER242 LYS243 GLN244 GLN245 THR246 ALA247 MET248 ILE249 HIS250 GLU251 SER252 LEU253 GLN254 ALA255 GLU256 HIS257 LYS258 VAL259 VAL260 ILE261 ASP262 ARG263 LEU264 PHE265 PHE266 ILE267 VAL268 ASP269 LYS270 LEU271 VAL272 ARG273 GLY274 SER275 LEU276 ASN277 SER278 ARG279 THR280 ASP281 MET282 ILE283 SER284 TYR285 PHE286 ALA287 HIS288 ILE289 ALA290 ASN291 LYS292 ASN293 HIS294 LEU295 ARG296 ARG297 ALA298 ASP299 HIS300 PRO301 PRO302 PHE303 LYS304 GLU305 LEU306 SER307 SER308 ASN309 GLY310 PHE311 MET312 SER313 ASN314 ILE315 THR316 LEU317 LEU318 LEU319 VAL320 ARG321 PHE322 SER323 GLN324 PRO325 PHE326 LEU327 ASP328 ILE329 SER330 TYR331 LYS332 LYS333 ILE334 ASP335 LYS336 ILE337 ASP338 ALA339 ASN340 TYR341 PHE342 ASN343 ASN344 PRO345 SER346 LEU347 PHE348 ILE349 ASP350 LEU351 SER352 GLY353 GLU354 THR355 ARG356 LEU357 ASN358 SER359 ASP360 PHE361 LYS362 GLU363 ALA364 ASP365 ALA366 PHE367 TYR368 ASP369 LYS370 ASN371 ARG372 LYS373 THR374 ALA375 ASP376 SER377 LYS378 PRO379 ASN380 PHE381 ILE382 SER383 ASP384 CYS385 PHE386 PHE387 LEU388 THR389 LEU390 THR391 TYR392 LEU393 HIS394 TYR395 GLY396 LEU397 GLY398 GLY399 THR400 LEU401 SER402 PHE403 GLU404 GLU405 LYS406 MET407 GLY408 SER409 GLU410 ILE411 LYS412 ALA413 LEU414 LYS415 GLU416 GLU417 ILE418 GLU419 LYS420 VAL421 LYS422 LYS423 ILE424 ALA425 ALA426 ASN427 HIS428 ASP429 VAL430 PHE431 ALA432 ARG433 PHE434 ILE435 THR436 ALA437 GLN438 LEU439 SER440 LYS441 MET442 GLU443 LYS444 ALA445 LEU446 LYS447 THR448 THR449 GLU450 SER451 LEU452 ARG453 PHE454 ALA455 LEU456 GLN457 GLY458 PHE459 PHE460 ALA461 HIS462 ARG463 SER464 LEU465 GLN466 LEU467 GLU468 VAL469 PHE470 ASP471 PHE472 ILE473 CYS474 GLY475 ALA476 SER477 THR478 PHE479 LEU480 ILE481 ARG482 VAL483 VAL484 ASP485 PRO486 GLU487 HIS488 GLU489 PHE490 PRO491 PHE492 LYS493 GLN494 ILE495 LYS496 LEU497 PRO498 LEU499 ILE500 PRO501 ASP502 GLN503 ILE504 VAL509 ASP510 ASN511 ALA512 ASP513 PHE514 LEU515 ARG516 ALA517 HIS518 ALA519 PRO520 VAL521 PRO522 PHE523 LYS524 TYR525 TYR526 PRO527 GLU528 PHE529 VAL530 VAL531 GLU532 GLY533 PRO534 VAL535 ASN536 TYR537 SER538 LEU539 TYR540 ILE541 SER542 LYS543 TYR544 GLN545 THR546 SER547 PRO548 ILE549 PHE550 ARG551 ASN552 PRO553 ARG554 LEU555 GLY556 SER557 PHE558 VAL559 GLU560 PHE561 THR562 THR563 MET564 VAL565 LEU566 ARG567 CYS568 PRO569 GLU570 LEU571 VAL572 SER573 ASN574 PRO575 HIS576 LEU577 LYS578 GLY579 LYS580 LEU581 VAL582 GLN583 LEU584 LEU585 SER586 VAL587 GLY588 ALA589 MET590 PRO591 LEU592 THR593 ASP594 ASN595 SER596 PRO597 GLY598 PHE599 MET600 MET601 ASP602 ILE603 PHE604 GLU605 HIS606 ASP607 GLU608 LEU609 VAL610 ASN611 LYS612 ASN613 LEU614 LEU615 TYR616 ALA617 LEU618 LEU619 ASP620 PHE621 TYR622 VAL623 ILE624 VAL625 GLU626 LYS627 THR628 GLY629 SER630 SER631 SER632 GLN633 PHE634 TYR635 ASP636 LYS637 PHE638 ASN639 SER640 ARG641 TYR642 SER643 ILE644 SER645 ILE646 ILE647 LEU648 GLU649 GLU650 LEU651 TYR652 TYR653 LYS654 ILE655 PRO656 SER657 TYR658 LYS659 ASN660 GLN661 LEU662 ILE663 TRP664 GLN665 SER666 GLN667 ASN668 ASN669 ALA670 ASP671 PHE672 PHE673 VAL674 ARG675 PHE676 VAL677 ALA678 ARG679 MET680 LEU681 ASN682 ASP683 LEU684 THR685 PHE686 LEU687 LEU688 ASP689 GLU690 GLY691 LEU692 SER693 ASN694 LEU695 ALA696 GLU697 VAL698 HIS699 ASN700 ILE701 GLN702 ASN703 GLU704 LEU705 ASP706 ASN707 ARG708 ALA709 ARG710 GLY711 ALA712 PRO713 ARG716 GLU717 GLU718 GLU719 ASP720 LYS721 GLU722 LEU723 GLN724 THR725 ARG726 LEU727 ALA728 SER729 ALA730 SER731 ARG732 GLN733 ALA734 LYS735 SER736 SER737 CYS738 GLY739 LEU740 ALA741 ASP742 LYS743 SER744 MET745 LYS746 LEU747 PHE748 GLU749 ILE750 TYR751 SER752 LYS753 ASP754 ILE755 PRO756 ALA757 ALA758 PHE759 VAL760 THR761 PRO762 GLU763 ILE764 VAL765 TYR766 ARG767 LEU768 ALA769 SER770 MET771 LEU772 ASN773 TYR774 ASN775 LEU776 GLU777 SER778 LEU779 VAL780 GLY781 PRO782 LYS783 CYS784 GLY785 GLU786 LEU787 LYS788 VAL789 LYS790 ASP791 PRO792 GLN793 SER794 TYR795 SER796 PHE797 ASN798 PRO799 LYS800 ASP801 LEU802 LEU803 LYS804 ALA805 LEU806 THR807 THR808 VAL809 TYR810 ILE811 ASN812 LEU813 SER814 GLU815 GLN816 SER817 GLU818 PHE819 ILE820 SER821 ALA822 VAL823 ALA824 LYS825 ASP826 GLU827 ARG828 SER829 PHE830 ASN831 ARG832 ASN833 LEU834 PHE835 VAL836 ARG837 ALA838 VAL839 ASP840 ILE841 LEU842 GLY843 ARG844 LYS845 THR846 GLY847 LEU848 ALA849 SER850 PRO851 GLU852 PHE853 ILE854 GLU855 LYS856 LEU857 LEU858 ASN859 PHE860 ALA861 ASN862 LYS863 ALA864 GLU865 GLU866 GLN867 ARG868 LYS869 ALA870 ASP871 GLU872 GLU873 GLU874 ASP875 LEU876 GLU877 TYR878 GLY879 ASP880 VAL881 PRO882 ASP883 GLU884 PHE885 LEU886 ASP887 PRO888 LEU889 MET890 TYR891 THR892 ILE893 MET894 LYS895 ASP896 PRO897 VAL898 ILE899 LEU900 PRO901 ALA902 SER903 LYS904 MET905 ASN906 ILE907 ASP908 ARG909 SER910 THR911 ILE912 LYS913 ALA914 HIS915 LEU916 LEU917 SER918 ASP919 SER920 THR921 ASP922 PRO923 PHE924 ASN925 ARG926 MET927 PRO928 LEU929 LYS930 LEU931 GLU932 ASP933 VAL934 THR935 PRO936 ASN937 GLU938 GLU939 LEU940 ARG941 GLN942 LYS943 ILE944 LEU945 CYS946 PHE947 LYS948 LYS949 GLN950 LYS951 LYS952 GLU953 GLU954 ALA955
Unit 2 SER3 LEU4 THR5 PHE6 LYS7 ASN8 PHE9 LYS10 LYS11 GLU12 LYS13 VAL14 PRO15 LEU16 ASP17 LEU18 GLU19 PRO20 SER21 ASN22 THR23 ILE24 LEU25 GLU26 THR27 LYS28 THR29 LYS30 LEU31 ALA32 GLN33 SER34 ILE35 SER36 CYS37 GLU38 GLU39 SER40 GLN41 ILE42 LYS43 LEU44 ILE45 TYR46 SER47 GLY48 LYS49 VAL50 LEU51 GLN52 ASP53 SER54 LYS55 THR56 VAL57 SER58 GLU59 CYS60 GLY61 LEU62 LYS63 ASP64 GLY65 ASP66 GLN67 VAL68 VAL69 PHE70 MET71 VAL72 SER73 GLN74
Ligands
Unit 3 1PE962 K963
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany