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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A H7 INFLUENZA VIRUS HEMAGGLUTININ COMP LSTB
Keywords INFLUENZA VIRUS, HEMAGGLUTININ, LSTB, ENVELOPE PROTEIN, FUSI PROTEIN, HOST CELL MEMBRANE, HOST MEMBRANE, MEMBRANE, TRANS VIRION, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3M5J     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ  A 310 2392 0
2  Protein   HEMAGGLUTININ  B 176 1419 0
3  Protein   HEMAGGLUTININ  C 309 2383 0
4  Protein   HEMAGGLUTININ  D 172 1393 0
5  Protein   HEMAGGLUTININ  E 309 2383 0
6  Protein   HEMAGGLUTININ  F 171 1384 0
7  Ligand    G 4 0 57
8  Ligand    H 2 0 33
9  Ligand    I 2 0 33
10  Ligand   HEMAGGLUTININ  A 1 0 14
11  Ligand   HEMAGGLUTININ  B 4 0 32
12  Ligand   HEMAGGLUTININ  C 1 0 14
13  Ligand   HEMAGGLUTININ  D 2 0 20
14  Ligand   HEMAGGLUTININ  E 1 0 14
15  Ligand   HEMAGGLUTININ  F 2 0 20
16 Water     514 0 514
total       1980 11354 751
Proteins
Unit 1 GLY10 ASP11 LYS12 ILE13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 ALA21 ASN22 GLY23 THR24 LYS25 VAL26 ASN27 THR28 LEU29 THR30 GLU31 ARG32 GLY33 ILE34 GLU35 VAL36 VAL37 ASN38 ALA39 THR40 GLU41 THR42 VAL43 GLU44 THR45 THR46 ASN47 ILE48 LYS49 LYS50 ILE51 CYS52 THR53 GLN54 GLY55 LYS56 ARG57 PRO58 THR59 ASP60 LEU61 GLY62 GLN63 CYS64 GLY65 LEU66 LEU67 GLY68 THR69 LEU70 ILE71 GLY72 PRO73 PRO74 GLN75 CYS76 ASP77 GLN78 PHE79 LEU80 GLU81 PHE82 SER83 SER84 ASP85 LEU86 ILE87 ILE88 GLU89 ARG90 ARG91 GLU92 GLY93 THR94 ASP95 ILE96 CYS97 TYR98 PRO99 GLY100 ARG101 PHE102 THR103 ASN104 GLU105 GLU106 SER107 LEU108 ARG109 GLN110 ILE111 LEU112 ARG113 ARG114 SER115 GLY116 GLY117 ILE118 GLY119 LYS120 GLU121 SER122 MET123 GLY124 PHE125 THR126 TYR127 SER128 GLY129 ILE130 ARG131 THR132 ASN133 GLY134 ALA135 THR136 SER137 ALA138 CYS139 THR140 ARG141 SER142 GLY144 SER145 SER146 PHE147 TYR148 ALA149 GLU150 MET151 LYS152 TRP153 LEU154 LEU155 SER156 ASN157 SER158 ASP158A ASN158B ALA159 ALA160 PHE161 PRO162 GLN163 MET164 THR165 LYS166 ALA167 TYR168 ARG169 ASN170 PRO171 ARG172 ASN173 LYS174 PRO175 ALA176 LEU177 ILE178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 SER185 GLU186 SER187 VAL188 SER189 GLU190 GLN191 THR192 LYS193 LEU194 TYR195 GLY196 SER197 GLY198 ASN199 LYS200 LEU201 ILE202 THR203 VAL204 ARG205 SER206 SER207 LYS208 TYR209 GLN210 GLN211 SER212 PHE213 THR214 PRO215 ASN216 PRO217 GLY218 ALA219 ARG220 ARG229 ILE230 ASP231 PHE232 HIS233 TRP234 LEU235 LEU236 LEU237 ASP238 PRO239 ASN240 ASP241 THR242 VAL243 THR244 PHE245 THR246 PHE247 ASN248 GLY249 ALA250 PHE251 ILE252 ALA253 PRO254 ASP255 ARG256 THR257 SER258 PHE259 PHE260 ARG261 GLY263 GLU264 SER265 LEU266 GLY267 VAL268 GLN269 SER270 ASP271 ALA272 PRO273 LEU274 ASP275 SER276 SER276A CYS277 ARG278 GLY279 ASP280 CYS281 PHE282 HIS283 SER284 GLY285 GLY286 THR287 ILE288 VAL289 SER290 SER291 LEU292 PRO293 PHE294 GLN295 ASN296 ILE297 ASN298 SER299 ARG300 THR301 VAL302 GLY303 LYS304 CYS305 PRO306 ARG307 TYR308 VAL309 LYS310 GLN311 LYS312 SER313 LEU314 LEU315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325 LYS326
Unit 2 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 LEU17 ILE18 ASN19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 GLU32 GLY33 THR34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 SER43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 ILE56 GLY57 LYS58 THR59 ASN60 GLN61 GLN62 PHE63 GLU64 LEU65 ILE66 ASP67 ASN68 GLU69 PHE70 ASN71 GLU72 ILE73 GLU74 GLN75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 ARG85 ASP86 ALA87 MET88 THR89 GLU90 ILE91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 ALA111 ASP112 SER113 GLU114 MET115 SER116 LYS117 LEU118 TYR119 GLU120 ARG121 VAL122 LYS123 LYS124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 THR135 GLY136 CYS137 PHE138 GLU139 ILE140 PHE141 HIS142 LYS143 CYS144 ASP145 ASP146 GLN147 CYS148 MET149 GLU150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 THR160 GLN161 TYR162 ARG163 THR164 GLU165 SER166 LEU167 GLN168 ASN169 ARG170 ILE171 GLN172 ILE173 ASP174 SER175 GLY176
Unit 3 GLY10 ASP11 LYS12 ILE13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 ALA21 ASN22 GLY23 THR24 LYS25 VAL26 ASN27 THR28 LEU29 THR30 GLU31 ARG32 GLY33 ILE34 GLU35 VAL36 VAL37 ASN38 ALA39 THR40 GLU41 THR42 VAL43 GLU44 THR45 THR46 ASN47 ILE48 LYS49 LYS50 ILE51 CYS52 THR53 GLN54 GLY55 LYS56 ARG57 PRO58 THR59 ASP60 LEU61 GLY62 GLN63 CYS64 GLY65 LEU66 LEU67 GLY68 THR69 LEU70 ILE71 GLY72 PRO73 PRO74 GLN75 CYS76 ASP77 GLN78 PHE79 LEU80 GLU81 PHE82 SER83 SER84 ASP85 LEU86 ILE87 ILE88 GLU89 ARG90 ARG91 GLU92 GLY93 THR94 ASP95 ILE96 CYS97 TYR98 PRO99 GLY100 ARG101 PHE102 THR103 ASN104 GLU105 GLU106 SER107 LEU108 ARG109 GLN110 ILE111 LEU112 ARG113 ARG114 SER115 GLY116 GLY117 ILE118 GLY119 LYS120 GLU121 SER122 MET123 GLY124 PHE125 THR126 TYR127 SER128 GLY129 ILE130 ARG131 THR132 ASN133 GLY134 ALA135 THR136 SER137 ALA138 CYS139 THR140 ARG141 SER142 GLY144 SER145 SER146 PHE147 TYR148 ALA149 GLU150 MET151 LYS152 TRP153 LEU154 LEU155 SER156 ASN157 SER158 ASP158A ASN158B ALA159 ALA160 PHE161 PRO162 GLN163 MET164 THR165 LYS166 ALA167 TYR168 ARG169 ASN170 PRO171 ARG172 ASN173 LYS174 PRO175 ALA176 LEU177 ILE178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 SER185 GLU186 SER187 VAL188 SER189 GLU190 GLN191 THR192 LYS193 LEU194 TYR195 GLY196 SER197 GLY198 ASN199 LYS200 LEU201 ILE202 THR203 VAL204 ARG205 SER206 SER207 LYS208 TYR209 GLN210 GLN211 SER212 PHE213 THR214 PRO215 ASN216 PRO217 GLY218 ALA219 ARG220 ARG229 ILE230 ASP231 PHE232 HIS233 TRP234 LEU235 LEU236 LEU237 ASP238 PRO239 ASN240 ASP241 THR242 VAL243 THR244 PHE245 THR246 PHE247 ASN248 GLY249 ALA250 PHE251 ILE252 ALA253 PRO254 ASP255 ARG256 THR257 SER258 PHE259 PHE260 ARG261 GLY263 GLU264 SER265 LEU266 GLY267 VAL268 GLN269 SER270 ASP271 ALA272 PRO273 LEU274 ASP275 SER276 SER276A CYS277 ARG278 GLY279 ASP280 CYS281 PHE282 HIS283 SER284 GLY285 GLY286 THR287 ILE288 VAL289 SER290 SER291 LEU292 PRO293 PHE294 GLN295 ASN296 ILE297 ASN298 SER299 ARG300 THR301 VAL302 GLY303 LYS304 CYS305 PRO306 ARG307 TYR308 VAL309 LYS310 GLN311 LYS312 SER313 LEU314 LEU315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325
Unit 4 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 LEU17 ILE18 ASN19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 GLU32 GLY33 THR34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 SER43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 ILE56 GLY57 LYS58 THR59 ASN60 GLN61 GLN62 PHE63 GLU64 LEU65 ILE66 ASP67 ASN68 GLU69 PHE70 ASN71 GLU72 ILE73 GLU74 GLN75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 ARG85 ASP86 ALA87 MET88 THR89 GLU90 ILE91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 ALA111 ASP112 SER113 GLU114 MET115 SER116 LYS117 LEU118 TYR119 GLU120 ARG121 VAL122 LYS123 LYS124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 THR135 GLY136 CYS137 PHE138 GLU139 ILE140 PHE141 HIS142 LYS143 CYS144 ASP145 ASP146 GLN147 CYS148 MET149 GLU150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 THR160 GLN161 TYR162 ARG163 THR164 GLU165 SER166 LEU167 GLN168 ASN169 ARG170 ILE171 GLN172
Unit 5 GLY10 ASP11 LYS12 ILE13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 ALA21 ASN22 GLY23 THR24 LYS25 VAL26 ASN27 THR28 LEU29 THR30 GLU31 ARG32 GLY33 ILE34 GLU35 VAL36 VAL37 ASN38 ALA39 THR40 GLU41 THR42 VAL43 GLU44 THR45 THR46 ASN47 ILE48 LYS49 LYS50 ILE51 CYS52 THR53 GLN54 GLY55 LYS56 ARG57 PRO58 THR59 ASP60 LEU61 GLY62 GLN63 CYS64 GLY65 LEU66 LEU67 GLY68 THR69 LEU70 ILE71 GLY72 PRO73 PRO74 GLN75 CYS76 ASP77 GLN78 PHE79 LEU80 GLU81 PHE82 SER83 SER84 ASP85 LEU86 ILE87 ILE88 GLU89 ARG90 ARG91 GLU92 GLY93 THR94 ASP95 ILE96 CYS97 TYR98 PRO99 GLY100 ARG101 PHE102 THR103 ASN104 GLU105 GLU106 SER107 LEU108 ARG109 GLN110 ILE111 LEU112 ARG113 ARG114 SER115 GLY116 GLY117 ILE118 GLY119 LYS120 GLU121 SER122 MET123 GLY124 PHE125 THR126 TYR127 SER128 GLY129 ILE130 ARG131 THR132 ASN133 GLY134 ALA135 THR136 SER137 ALA138 CYS139 THR140 ARG141 SER142 GLY144 SER145 SER146 PHE147 TYR148 ALA149 GLU150 MET151 LYS152 TRP153 LEU154 LEU155 SER156 ASN157 SER158 ASP158A ASN158B ALA159 ALA160 PHE161 PRO162 GLN163 MET164 THR165 LYS166 ALA167 TYR168 ARG169 ASN170 PRO171 ARG172 ASN173 LYS174 PRO175 ALA176 LEU177 ILE178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 SER185 GLU186 SER187 VAL188 SER189 GLU190 GLN191 THR192 LYS193 LEU194 TYR195 GLY196 SER197 GLY198 ASN199 LYS200 LEU201 ILE202 THR203 VAL204 ARG205 SER206 SER207 LYS208 TYR209 GLN210 GLN211 SER212 PHE213 THR214 PRO215 ASN216 PRO217 GLY218 ALA219 ARG220 ARG229 ILE230 ASP231 PHE232 HIS233 TRP234 LEU235 LEU236 LEU237 ASP238 PRO239 ASN240 ASP241 THR242 VAL243 THR244 PHE245 THR246 PHE247 ASN248 GLY249 ALA250 PHE251 ILE252 ALA253 PRO254 ASP255 ARG256 THR257 SER258 PHE259 PHE260 ARG261 GLY263 GLU264 SER265 LEU266 GLY267 VAL268 GLN269 SER270 ASP271 ALA272 PRO273 LEU274 ASP275 SER276 SER276A CYS277 ARG278 GLY279 ASP280 CYS281 PHE282 HIS283 SER284 GLY285 GLY286 THR287 ILE288 VAL289 SER290 SER291 LEU292 PRO293 PHE294 GLN295 ASN296 ILE297 ASN298 SER299 ARG300 THR301 VAL302 GLY303 LYS304 CYS305 PRO306 ARG307 TYR308 VAL309 LYS310 GLN311 LYS312 SER313 LEU314 LEU315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325
Unit 6 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 LEU17 ILE18 ASN19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 GLU32 GLY33 THR34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 SER43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 ILE56 GLY57 LYS58 THR59 ASN60 GLN61 GLN62 PHE63 GLU64 LEU65 ILE66 ASP67 ASN68 GLU69 PHE70 ASN71 GLU72 ILE73 GLU74 GLN75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 ARG85 ASP86 ALA87 MET88 THR89 GLU90 ILE91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 ALA111 ASP112 SER113 GLU114 MET115 SER116 LYS117 LEU118 TYR119 GLU120 ARG121 VAL122 LYS123 LYS124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 THR135 GLY136 CYS137 PHE138 GLU139 ILE140 PHE141 HIS142 LYS143 CYS144 ASP145 ASP146 GLN147 CYS148 MET149 GLU150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 THR160 GLN161 TYR162 ARG163 THR164 GLU165 SER166 LEU167 GLN168 ASN169 ARG170 ILE171
Ligands
Unit 7 GAL1 NAG2 GAL3 SIA4
Unit 8 NAG1 SIA2
Unit 9 NAG1 SIA2
Unit 10 NAG1
Unit 11 NAG183 GOL184 GOL185 GOL186
Unit 12 NAG1
Unit 13 NAG183 GOL184
Unit 14 NAG1
Unit 15 NAG183 GOL184
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany