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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE ANALYSIS OF THE K3 CLEAVED ADHESIN DOMAIN GINGIPAIN (KGP) FROM PORPHYROMONAS GINGIVALIS W83
Keywords BETA JELLY ROLL BARREL, CLEAVED ADHESIN FAMILY, LYS-GINGIPAI HEMAGGLUTINATION DOMAIN, CARBOHYDRATE BINDING, PROTEASE, CE INVASION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3M1H     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LYSINE SPECIFIC CYSTEINE PROTEASE  A 174 1316 0
2  Protein   LYSINE SPECIFIC CYSTEINE PROTEASE  B 175 1327 0
3  Protein   LYSINE SPECIFIC CYSTEINE PROTEASE  C 170 1277 0
4  Protein   LYSINE SPECIFIC CYSTEINE PROTEASE  D 176 1320 0
5  Ligand   LYSINE SPECIFIC CYSTEINE PROTEASE  A 5 0 5
6  Ligand   LYSINE SPECIFIC CYSTEINE PROTEASE  B 5 0 5
7  Ligand   LYSINE SPECIFIC CYSTEINE PROTEASE  C 4 0 4
8  Ligand   LYSINE SPECIFIC CYSTEINE PROTEASE  D 3 0 3
9 Water     825 0 825
total       1537 5240 842
Proteins
Unit 1 ALA1427 GLU1428 VAL1429 LEU1430 ASN1431 GLU1432 ASP1433 PHE1434 GLU1435 ASN1436 GLY1437 ILE1438 PRO1439 ALA1440 SER1441 TRP1442 LYS1443 THR1444 ILE1445 ASP1446 ALA1447 ASP1448 GLY1449 ASP1450 GLY1451 ASN1452 ASN1453 TRP1454 THR1455 THR1456 THR1457 PRO1458 PRO1459 PRO1460 GLY1461 GLY1462 SER1463 SER1464 PHE1465 ALA1466 GLY1467 HIS1468 ASN1469 SER1470 ALA1471 ILE1472 CYS1473 VAL1474 SER1475 SER1476 ALA1477 SER1478 TYR1479 ILE1480 ASN1481 PHE1482 GLU1483 GLY1484 PRO1485 GLN1486 ASN1487 PRO1488 ASP1489 ASN1490 TYR1491 LEU1492 VAL1493 THR1494 PRO1495 GLU1496 LEU1497 SER1498 LEU1499 PRO1500 GLY1501 GLY1502 GLY1503 THR1504 LEU1505 THR1506 PHE1507 TRP1508 VAL1509 CYS1510 ALA1511 GLN1512 ASP1513 ALA1514 ASN1515 TYR1516 ALA1517 SER1518 GLU1519 HIS1520 TYR1521 ALA1522 VAL1523 TYR1524 ALA1525 SER1526 SER1527 THR1528 GLY1529 ASN1530 ASP1531 ALA1532 SER1533 ASN1534 PHE1535 ALA1536 ASN1537 ALA1538 LEU1539 LEU1540 GLU1541 GLU1542 VAL1543 LEU1544 THR1545 ALA1546 LYS1547 THR1548 VAL1549 VAL1550 PRO1553 GLU1554 ALA1555 ILE1556 ARG1557 GLY1558 THR1559 ARG1560 ALA1561 GLN1562 GLY1563 THR1564 TRP1565 TYR1566 GLN1567 LYS1568 THR1569 VAL1570 GLN1571 LEU1572 PRO1573 ALA1574 GLY1575 THR1576 LYS1577 TYR1578 VAL1579 ALA1580 PHE1581 ARG1582 HIS1583 PHE1584 GLY1585 CYS1586 THR1587 ASP1588 PHE1589 PHE1590 TRP1591 ILE1592 ASN1593 LEU1594 ASP1595 ASP1596 VAL1597 VAL1598 ILE1599 THR1600 SER1601 GLY1602
Unit 2 ALA1427 GLU1428 VAL1429 LEU1430 ASN1431 GLU1432 ASP1433 PHE1434 GLU1435 ASN1436 GLY1437 ILE1438 PRO1439 ALA1440 SER1441 TRP1442 LYS1443 THR1444 ILE1445 ASP1446 ALA1447 ASP1448 GLY1449 ASP1450 GLY1451 ASN1452 ASN1453 TRP1454 THR1455 THR1456 THR1457 PRO1458 PRO1459 PRO1460 GLY1461 GLY1462 SER1463 SER1464 PHE1465 ALA1466 GLY1467 HIS1468 ASN1469 SER1470 ALA1471 ILE1472 CYS1473 VAL1474 SER1475 SER1476 ALA1477 SER1478 TYR1479 ILE1480 ASN1481 PHE1482 GLU1483 GLY1484 PRO1485 GLN1486 ASN1487 PRO1488 ASP1489 ASN1490 TYR1491 LEU1492 VAL1493 THR1494 PRO1495 GLU1496 LEU1497 SER1498 LEU1499 PRO1500 GLY1501 GLY1502 GLY1503 THR1504 LEU1505 THR1506 PHE1507 TRP1508 VAL1509 CYS1510 ALA1511 GLN1512 ASP1513 ALA1514 ASN1515 TYR1516 ALA1517 SER1518 GLU1519 HIS1520 TYR1521 ALA1522 VAL1523 TYR1524 ALA1525 SER1526 SER1527 THR1528 GLY1529 ASN1530 ASP1531 ALA1532 SER1533 ASN1534 PHE1535 ALA1536 ASN1537 ALA1538 LEU1539 LEU1540 GLU1541 GLU1542 VAL1543 LEU1544 THR1545 ALA1546 LYS1547 THR1548 VAL1549 VAL1550 THR1551 ALA1552 PRO1553 GLU1554 ALA1555 ILE1556 ARG1557 GLY1558 THR1559 ARG1560 ALA1561 GLN1562 GLY1563 THR1564 TRP1565 TYR1566 GLN1567 LYS1568 THR1569 VAL1570 GLN1571 LEU1572 PRO1573 ALA1574 GLY1575 THR1576 LYS1577 TYR1578 VAL1579 ALA1580 PHE1581 ARG1582 HIS1583 PHE1584 GLY1585 CYS1586 THR1587 ASP1588 PHE1589 PHE1590 TRP1591 ILE1592 ASN1593 LEU1594 ASP1595 ASP1596 VAL1597 VAL1598 ILE1599 THR1600 SER1601
Unit 3 GLY1425 SER1426 ALA1427 GLU1428 VAL1429 LEU1430 ASN1431 GLU1432 ASP1433 PHE1434 GLU1435 ASN1436 GLY1437 ILE1438 PRO1439 ALA1440 SER1441 TRP1442 LYS1443 THR1444 ILE1445 ASP1446 ALA1447 ASP1448 GLY1449 ASP1450 GLY1451 ASN1452 ASN1453 TRP1454 THR1455 THR1456 THR1457 PRO1458 PRO1459 PRO1460 GLY1461 GLY1462 SER1463 SER1464 PHE1465 ALA1466 GLY1467 HIS1468 ASN1469 SER1470 ALA1471 ILE1472 CYS1473 VAL1474 SER1475 SER1476 ALA1477 SER1478 TYR1479 ILE1480 ASN1481 PHE1482 GLU1483 GLY1484 PRO1485 GLN1486 ASN1487 PRO1488 ASP1489 ASN1490 TYR1491 LEU1492 VAL1493 THR1494 PRO1495 GLU1496 LEU1497 SER1498 LEU1499 PRO1500 GLY1501 GLY1502 GLY1503 THR1504 LEU1505 THR1506 PHE1507 TRP1508 VAL1509 CYS1510 ALA1511 GLN1512 ASP1513 ALA1514 ASN1515 TYR1516 ALA1517 SER1518 GLU1519 HIS1520 TYR1521 ALA1522 VAL1523 TYR1524 ALA1525 SER1526 SER1527 THR1528 GLY1529 ASN1530 ASP1531 ALA1532 SER1533 ASN1534 PHE1535 ALA1536 ASN1537 ALA1538 LEU1539 LEU1540 GLU1541 GLU1542 VAL1543 LEU1544 THR1545 GLU1554 ALA1555 ILE1556 ARG1557 GLY1558 THR1559 ARG1560 ALA1561 GLN1562 GLY1563 THR1564 TRP1565 TYR1566 GLN1567 LYS1568 THR1569 VAL1570 GLN1571 LEU1572 PRO1573 ALA1574 GLY1575 THR1576 LYS1577 TYR1578 VAL1579 ALA1580 PHE1581 ARG1582 HIS1583 PHE1584 GLY1585 CYS1586 THR1587 ASP1588 PHE1589 PHE1590 TRP1591 ILE1592 ASN1593 LEU1594 ASP1595 ASP1596 VAL1597 VAL1598 ILE1599 THR1600 SER1601 GLY1602
Unit 4 ALA1427 GLU1428 VAL1429 LEU1430 ASN1431 GLU1432 ASP1433 PHE1434 GLU1435 ASN1436 GLY1437 ILE1438 PRO1439 ALA1440 SER1441 TRP1442 LYS1443 THR1444 ILE1445 ASP1446 ALA1447 ASP1448 GLY1449 ASP1450 GLY1451 ASN1452 ASN1453 TRP1454 THR1455 THR1456 THR1457 PRO1458 PRO1459 PRO1460 GLY1461 GLY1462 SER1463 SER1464 PHE1465 ALA1466 GLY1467 HIS1468 ASN1469 SER1470 ALA1471 ILE1472 CYS1473 VAL1474 SER1475 SER1476 ALA1477 SER1478 TYR1479 ILE1480 ASN1481 PHE1482 GLU1483 GLY1484 PRO1485 GLN1486 ASN1487 PRO1488 ASP1489 ASN1490 TYR1491 LEU1492 VAL1493 THR1494 PRO1495 GLU1496 LEU1497 SER1498 LEU1499 PRO1500 GLY1501 GLY1502 GLY1503 THR1504 LEU1505 THR1506 PHE1507 TRP1508 VAL1509 CYS1510 ALA1511 GLN1512 ASP1513 ALA1514 ASN1515 TYR1516 ALA1517 SER1518 GLU1519 HIS1520 TYR1521 ALA1522 VAL1523 TYR1524 ALA1525 SER1526 SER1527 THR1528 GLY1529 ASN1530 ASP1531 ALA1532 SER1533 ASN1534 PHE1535 ALA1536 ASN1537 ALA1538 LEU1539 LEU1540 GLU1541 GLU1542 VAL1543 LEU1544 THR1545 ALA1546 LYS1547 THR1548 VAL1549 VAL1550 THR1551 ALA1552 PRO1553 GLU1554 ALA1555 ILE1556 ARG1557 GLY1558 THR1559 ARG1560 ALA1561 GLN1562 GLY1563 THR1564 TRP1565 TYR1566 GLN1567 LYS1568 THR1569 VAL1570 GLN1571 LEU1572 PRO1573 ALA1574 GLY1575 THR1576 LYS1577 TYR1578 VAL1579 ALA1580 PHE1581 ARG1582 HIS1583 PHE1584 GLY1585 CYS1586 THR1587 ASP1588 PHE1589 PHE1590 TRP1591 ILE1592 ASN1593 LEU1594 ASP1595 ASP1596 VAL1597 VAL1598 ILE1599 THR1600 SER1601 GLY1602
Ligands
Unit 5 CA2001 CA2002 NA2003 NA2004 NA2005
Unit 6 CA2001 CA2002 NA2003 NA2004 NA2005
Unit 7 CA2001 CA2002 NA2003 NA2004
Unit 8 CA2001 CA2002 NA2003
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany