3LYF - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE RIFT VALLEY FEVER VIRUS NUCLEOCAPSI
• Keywords: NUCLEOCAPSID PROTEIN, N PROTEIN, RIFT VALLEY FEVER VIRUS, RIBONUCLEOPROTEIN, VIRAL NUCLEOPROTEIN, VIRAL PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3LYF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NUCLEOCAPSID PROTEIN	A	244	1910	0
2	Protein	NUCLEOCAPSID PROTEIN	B	244	1907	0
3	Protein	NUCLEOCAPSID PROTEIN	C	241	1884	0
4	Protein	NUCLEOCAPSID PROTEIN	D	238	1856	0
5	Ligand	NUCLEOCAPSID PROTEIN	A	1	0	6
6	Ligand	NUCLEOCAPSID PROTEIN	B	1	0	6
7	Ligand	NUCLEOCAPSID PROTEIN	C	1	0	6
8	Ligand	NUCLEOCAPSID PROTEIN	D	1	0	6
9	Water			616	0	616
total				1587	7557	640

Proteins

Unit 1	MET 1 ASP 2 ASN 3 TYR 4 GLN 5 GLU 6 LEU 7 ALA 8 ILE 9 GLN 10 PHE 11 ALA 12 ALA 13 GLN 14 ALA 15 VAL 16 ARG 18 ASN 19 GLU 20 ILE 21 GLU 22 GLN 23 TRP 24 VAL 25 ARG 26 GLU 27 PHE 28 ALA 29 TYR 30 GLN 31 GLY 32 PHE 33 ASP 34 ALA 35 ARG 36 ARG 37 VAL 38 ILE 39 GLU 40 LEU 41 LEU 42 LYS 43 GLN 44 TYR 45 GLY 46 GLY 47 ALA 48 ASP 49 TRP 50 GLU 51 LYS 52 ASP 53 ALA 54 LYS 55 LYS 56 MET 57 ILE 58 VAL 59 LEU 60 ALA 61 LEU 62 THR 63 ARG 64 GLY 65 ASN 66 LYS 67 PRO 68 ARG 69 ARG 70 MET 71 MET 72 MET 73 LYS 74 MET 75 SER 76 LYS 77 GLU 78 GLY 79 LYS 80 ALA 81 THR 82 VAL 83 GLU 84 ALA 85 LEU 86 ILE 87 ASN 88 LYS 89 TYR 90 LYS 91 LEU 92 LYS 93 GLU 94 GLY 95 ASN 96 PRO 97 SER 98 ARG 99 ASP 100 GLU 101 LEU 102 THR 103 LEU 104 SER 105 ARG 106 VAL 107 ALA 108 ALA 109 ALA 110 LEU 111 ALA 112 GLY 113 ARG 114 THR 115 CYS 116 GLN 117 ALA 118 LEU 119 VAL 120 VAL 121 LEU 122 SER 123 GLU 124 TRP 125 LEU 126 PRO 127 VAL 128 THR 129 GLY 130 THR 131 THR 132 MET 133 ASP 134 GLY 135 LEU 136 SER 137 PRO 138 ALA 139 TYR 140 PRO 141 ARG 142 HIS 143 MET 144 MET 145 HIS 146 PRO 147 SER 148 PHE 149 ALA 150 GLY 151 MET 152 VAL 153 ASP 154 PRO 155 SER 156 LEU 157 PRO 158 GLY 159 ASP 160 TYR 161 LEU 162 ARG 163 ALA 164 ILE 165 LEU 166 ASP 167 ALA 168 HIS 169 SER 170 LEU 171 TYR 172 LEU 173 LEU 174 GLN 175 PHE 176 SER 177 ARG 178 VAL 179 ILE 180 ASN 181 PRO 182 ASN 183 LEU 184 ARG 185 GLY 186 ARG 187 THR 188 LYS 189 GLU 190 GLU 191 VAL 192 ALA 193 ALA 194 THR 195 PHE 196 THR 197 GLN 198 PRO 199 MET 200 ASN 201 ALA 202 ALA 203 VAL 204 ASN 205 SER 206 ASN 207 PHE 208 ILE 209 SER 210 HIS 211 GLU 212 LYS 213 ARG 214 ARG 215 GLU 216 PHE 217 LEU 218 LYS 219 ALA 220 PHE 221 GLY 222 LEU 223 VAL 224 ASP 225 SER 226 ASN 227 GLY 228 LYS 229 PRO 230 SER 231 ALA 232 ALA 233 VAL 234 MET 235 ALA 236 ALA 237 ALA 238 GLN 239 ALA 240 TYR 241 LYS 242 THR 243 ALA 244 ALA 245
Unit 2	MET 1 ASP 2 ASN 3 TYR 4 GLN 5 GLU 6 LEU 7 ALA 8 ILE 9 GLN 10 PHE 11 ALA 12 ALA 13 GLN 14 ALA 15 VAL 16 ASP 17 ASN 19 GLU 20 ILE 21 GLU 22 GLN 23 TRP 24 VAL 25 ARG 26 GLU 27 PHE 28 ALA 29 TYR 30 GLN 31 GLY 32 PHE 33 ASP 34 ALA 35 ARG 36 ARG 37 VAL 38 ILE 39 GLU 40 LEU 41 LEU 42 LYS 43 GLN 44 TYR 45 GLY 46 GLY 47 ALA 48 ASP 49 TRP 50 GLU 51 LYS 52 ASP 53 ALA 54 LYS 55 LYS 56 MET 57 ILE 58 VAL 59 LEU 60 ALA 61 LEU 62 THR 63 ARG 64 GLY 65 ASN 66 LYS 67 PRO 68 ARG 69 ARG 70 MET 71 MET 72 MET 73 LYS 74 MET 75 SER 76 LYS 77 GLU 78 GLY 79 LYS 80 ALA 81 THR 82 VAL 83 GLU 84 ALA 85 LEU 86 ILE 87 ASN 88 LYS 89 TYR 90 LYS 91 LEU 92 LYS 93 GLU 94 GLY 95 ASN 96 PRO 97 SER 98 ARG 99 ASP 100 GLU 101 LEU 102 THR 103 LEU 104 SER 105 ARG 106 VAL 107 ALA 108 ALA 109 ALA 110 LEU 111 ALA 112 GLY 113 ARG 114 THR 115 CYS 116 GLN 117 ALA 118 LEU 119 VAL 120 VAL 121 LEU 122 SER 123 GLU 124 TRP 125 LEU 126 PRO 127 VAL 128 THR 129 GLY 130 THR 131 THR 132 MET 133 ASP 134 GLY 135 LEU 136 SER 137 PRO 138 ALA 139 TYR 140 PRO 141 ARG 142 HIS 143 MET 144 MET 145 HIS 146 PRO 147 SER 148 PHE 149 ALA 150 GLY 151 MET 152 VAL 153 ASP 154 PRO 155 SER 156 LEU 157 PRO 158 GLY 159 ASP 160 TYR 161 LEU 162 ARG 163 ALA 164 ILE 165 LEU 166 ASP 167 ALA 168 HIS 169 SER 170 LEU 171 TYR 172 LEU 173 LEU 174 GLN 175 PHE 176 SER 177 ARG 178 VAL 179 ILE 180 ASN 181 PRO 182 ASN 183 LEU 184 ARG 185 GLY 186 ARG 187 THR 188 LYS 189 GLU 190 GLU 191 VAL 192 ALA 193 ALA 194 THR 195 PHE 196 THR 197 GLN 198 PRO 199 MET 200 ASN 201 ALA 202 ALA 203 VAL 204 ASN 205 SER 206 ASN 207 PHE 208 ILE 209 SER 210 HIS 211 GLU 212 LYS 213 ARG 214 ARG 215 GLU 216 PHE 217 LEU 218 LYS 219 ALA 220 PHE 221 GLY 222 LEU 223 VAL 224 ASP 225 SER 226 ASN 227 GLY 228 LYS 229 PRO 230 SER 231 ALA 232 ALA 233 VAL 234 MET 235 ALA 236 ALA 237 ALA 238 GLN 239 ALA 240 TYR 241 LYS 242 THR 243 ALA 244 ALA 245
Unit 3	MET 1 ASP 2 ASN 3 TYR 4 GLN 5 GLU 6 LEU 7 ALA 8 ILE 9 GLN 10 PHE 11 ALA 12 ALA 13 GLN 14 ALA 15 GLU 20 ILE 21 GLU 22 GLN 23 TRP 24 VAL 25 ARG 26 GLU 27 PHE 28 ALA 29 TYR 30 GLN 31 GLY 32 PHE 33 ASP 34 ALA 35 ARG 36 ARG 37 VAL 38 ILE 39 GLU 40 LEU 41 LEU 42 LYS 43 GLN 44 TYR 45 GLY 46 GLY 47 ALA 48 ASP 49 TRP 50 GLU 51 LYS 52 ASP 53 ALA 54 LYS 55 LYS 56 MET 57 ILE 58 VAL 59 LEU 60 ALA 61 LEU 62 THR 63 ARG 64 GLY 65 ASN 66 LYS 67 PRO 68 ARG 69 ARG 70 MET 71 MET 72 MET 73 LYS 74 MET 75 SER 76 LYS 77 GLU 78 GLY 79 LYS 80 ALA 81 THR 82 VAL 83 GLU 84 ALA 85 LEU 86 ILE 87 ASN 88 LYS 89 TYR 90 LYS 91 LEU 92 LYS 93 GLU 94 GLY 95 ASN 96 PRO 97 SER 98 ARG 99 ASP 100 GLU 101 LEU 102 THR 103 LEU 104 SER 105 ARG 106 VAL 107 ALA 108 ALA 109 ALA 110 LEU 111 ALA 112 GLY 113 ARG 114 THR 115 CYS 116 GLN 117 ALA 118 LEU 119 VAL 120 VAL 121 LEU 122 SER 123 GLU 124 TRP 125 LEU 126 PRO 127 VAL 128 THR 129 GLY 130 THR 131 THR 132 MET 133 ASP 134 GLY 135 LEU 136 SER 137 PRO 138 ALA 139 TYR 140 PRO 141 ARG 142 HIS 143 MET 144 MET 145 HIS 146 PRO 147 SER 148 PHE 149 ALA 150 GLY 151 MET 152 VAL 153 ASP 154 PRO 155 SER 156 LEU 157 PRO 158 GLY 159 ASP 160 TYR 161 LEU 162 ARG 163 ALA 164 ILE 165 LEU 166 ASP 167 ALA 168 HIS 169 SER 170 LEU 171 TYR 172 LEU 173 LEU 174 GLN 175 PHE 176 SER 177 ARG 178 VAL 179 ILE 180 ASN 181 PRO 182 ASN 183 LEU 184 ARG 185 GLY 186 ARG 187 THR 188 LYS 189 GLU 190 GLU 191 VAL 192 ALA 193 ALA 194 THR 195 PHE 196 THR 197 GLN 198 PRO 199 MET 200 ASN 201 ALA 202 ALA 203 VAL 204 ASN 205 SER 206 ASN 207 PHE 208 ILE 209 SER 210 HIS 211 GLU 212 LYS 213 ARG 214 ARG 215 GLU 216 PHE 217 LEU 218 LYS 219 ALA 220 PHE 221 GLY 222 LEU 223 VAL 224 ASP 225 SER 226 ASN 227 GLY 228 LYS 229 PRO 230 SER 231 ALA 232 ALA 233 VAL 234 MET 235 ALA 236 ALA 237 ALA 238 GLN 239 ALA 240 TYR 241 LYS 242 THR 243 ALA 244 ALA 245
Unit 4	MET 1 ASP 2 ASN 3 TYR 4 GLN 5 GLU 6 LEU 7 ALA 8 ILE 9 GLN 10 PHE 11 ALA 12 ALA 13 GLN 14 ALA 15 GLU 20 ILE 21 GLU 22 GLN 23 TRP 24 VAL 25 ARG 26 GLU 27 GLN 31 GLY 32 PHE 33 ASP 34 ALA 35 ARG 36 ARG 37 VAL 38 ILE 39 GLU 40 LEU 41 LEU 42 LYS 43 GLN 44 TYR 45 GLY 46 GLY 47 ALA 48 ASP 49 TRP 50 GLU 51 LYS 52 ASP 53 ALA 54 LYS 55 LYS 56 MET 57 ILE 58 VAL 59 LEU 60 ALA 61 LEU 62 THR 63 ARG 64 GLY 65 ASN 66 LYS 67 PRO 68 ARG 69 ARG 70 MET 71 MET 72 MET 73 LYS 74 MET 75 SER 76 LYS 77 GLU 78 GLY 79 LYS 80 ALA 81 THR 82 VAL 83 GLU 84 ALA 85 LEU 86 ILE 87 ASN 88 LYS 89 TYR 90 LYS 91 LEU 92 LYS 93 GLU 94 GLY 95 ASN 96 PRO 97 SER 98 ARG 99 ASP 100 GLU 101 LEU 102 THR 103 LEU 104 SER 105 ARG 106 VAL 107 ALA 108 ALA 109 ALA 110 LEU 111 ALA 112 GLY 113 ARG 114 THR 115 CYS 116 GLN 117 ALA 118 LEU 119 VAL 120 VAL 121 LEU 122 SER 123 GLU 124 TRP 125 LEU 126 PRO 127 VAL 128 THR 129 GLY 130 THR 131 THR 132 MET 133 ASP 134 GLY 135 LEU 136 SER 137 PRO 138 ALA 139 TYR 140 PRO 141 ARG 142 HIS 143 MET 144 MET 145 HIS 146 PRO 147 SER 148 PHE 149 ALA 150 GLY 151 MET 152 VAL 153 ASP 154 PRO 155 SER 156 LEU 157 PRO 158 GLY 159 ASP 160 TYR 161 LEU 162 ARG 163 ALA 164 ILE 165 LEU 166 ASP 167 ALA 168 HIS 169 SER 170 LEU 171 TYR 172 LEU 173 LEU 174 GLN 175 PHE 176 SER 177 ARG 178 VAL 179 ILE 180 ASN 181 PRO 182 ASN 183 LEU 184 ARG 185 GLY 186 ARG 187 THR 188 LYS 189 GLU 190 GLU 191 VAL 192 ALA 193 ALA 194 THR 195 PHE 196 THR 197 GLN 198 PRO 199 MET 200 ASN 201 ALA 202 ALA 203 VAL 204 ASN 205 SER 206 ASN 207 PHE 208 ILE 209 SER 210 HIS 211 GLU 212 LYS 213 ARG 214 ARG 215 GLU 216 PHE 217 LEU 218 LYS 219 ALA 220 PHE 221 GLY 222 LEU 223 VAL 224 ASP 225 SER 226 ASN 227 GLY 228 LYS 229 PRO 230 SER 231 ALA 232 ALA 233 VAL 234 MET 235 ALA 236 ALA 237 ALA 238 GLN 239 ALA 240 TYR 241 LYS 242 THR 243 ALA 244 ALA 245

Ligands

Unit 5	GOL 246
Unit 6	GOL 246
Unit 7	GOL 246
Unit 8	GOL 246