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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE SHORT-CHAIN DEHYDROGENASE GALACTITO DEHYDROGENASE (GATDH) OF RHODOBACTER SPHAEROIDES IN COMPLEX AND ERYTHRITOL
Keywords OXIDOREDUCTASE, SDR, ROSSMANN FOLD, TAGATOSE, GALACTITOL
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3LQF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GALACTITOL DEHYDROGENASE  A 254 1848 0
2  Protein   GALACTITOL DEHYDROGENASE  B 254 1848 0
3  Protein   GALACTITOL DEHYDROGENASE  C 254 1848 0
4  Protein   GALACTITOL DEHYDROGENASE  D 254 1848 0
5  Ligand   GALACTITOL DEHYDROGENASE  A 3 0 53
6  Ligand   GALACTITOL DEHYDROGENASE  B 2 0 52
7  Ligand   GALACTITOL DEHYDROGENASE  C 3 0 53
8  Ligand   GALACTITOL DEHYDROGENASE  D 2 0 52
9 Water     509 0 509
total       1535 7392 719

Proteins
Unit 1 MET1 ASP2 TYR3 ARG4 THR5 VAL6 PHE7 ARG8 LEU9 ASP10 GLY11 ALA12 CYS13 ALA14 ALA15 VAL16 THR17 GLY18 ALA19 GLY20 SER21 GLY22 ILE23 GLY24 LEU25 GLU26 ILE27 CYS28 ARG29 ALA30 PHE31 ALA32 ALA33 SER34 GLY35 ALA36 ARG37 LEU38 ILE39 LEU40 ILE41 ASP42 ARG43 GLU44 ALA45 ALA46 ALA47 LEU48 ASP49 ARG50 ALA51 ALA52 GLN53 GLU54 LEU55 GLY56 ALA57 ALA58 VAL59 ALA60 ALA61 ARG62 ILE63 VAL64 ALA65 ASP66 VAL67 THR68 ASP69 ALA70 GLU71 ALA72 MET73 THR74 ALA75 ALA76 ALA77 ALA78 GLU79 ALA80 GLU81 ALA82 VAL83 ALA84 PRO85 VAL86 SER87 ILE88 LEU89 VAL90 ASN91 SER92 ALA93 GLY94 ILE95 ALA96 ARG97 LEU98 HIS99 ASP100 ALA101 LEU102 GLU103 THR104 ASP105 ASP106 ALA107 THR108 TRP109 ARG110 GLN111 VAL112 MET113 ALA114 VAL115 ASN116 VAL117 ASP118 GLY119 MET120 PHE121 TRP122 ALA123 SER124 ARG125 ALA126 PHE127 GLY128 ARG129 ALA130 MET131 VAL132 ALA133 ARG134 GLY135 ALA136 GLY137 ALA138 ILE139 VAL140 ASN141 LEU142 GLY143 SER144 MET145 SER146 GLY147 THR148 ILE149 VAL150 ASN151 ARG152 PRO153 GLN154 PHE155 ALA156 SER157 SER158 TYR159 MET160 ALA161 SER162 LYS163 GLY164 ALA165 VAL166 HIS167 GLN168 LEU169 THR170 ARG171 ALA172 LEU173 ALA174 ALA175 GLU176 TRP177 ALA178 GLY179 ARG180 GLY181 VAL182 ARG183 VAL184 ASN185 ALA186 LEU187 ALA188 PRO189 GLY190 TYR191 VAL192 ALA193 THR194 GLU195 MET196 THR197 LEU198 LYS199 MET200 ARG201 GLU202 ARG203 PRO204 GLU205 LEU206 PHE207 GLU208 THR209 TRP210 LEU211 ASP212 MET213 THR214 PRO215 MET216 GLY217 ARG218 CYS219 GLY220 GLU221 PRO222 SER223 GLU224 ILE225 ALA226 ALA227 ALA228 ALA229 LEU230 PHE231 LEU232 ALA233 SER234 PRO235 ALA236 ALA237 SER238 TYR239 VAL240 THR241 GLY242 ALA243 ILE244 LEU245 ALA246 VAL247 ASP248 GLY249 GLY250 TYR251 THR252 VAL253 TRP254
Unit 2 MET1 ASP2 TYR3 ARG4 THR5 VAL6 PHE7 ARG8 LEU9 ASP10 GLY11 ALA12 CYS13 ALA14 ALA15 VAL16 THR17 GLY18 ALA19 GLY20 SER21 GLY22 ILE23 GLY24 LEU25 GLU26 ILE27 CYS28 ARG29 ALA30 PHE31 ALA32 ALA33 SER34 GLY35 ALA36 ARG37 LEU38 ILE39 LEU40 ILE41 ASP42 ARG43 GLU44 ALA45 ALA46 ALA47 LEU48 ASP49 ARG50 ALA51 ALA52 GLN53 GLU54 LEU55 GLY56 ALA57 ALA58 VAL59 ALA60 ALA61 ARG62 ILE63 VAL64 ALA65 ASP66 VAL67 THR68 ASP69 ALA70 GLU71 ALA72 MET73 THR74 ALA75 ALA76 ALA77 ALA78 GLU79 ALA80 GLU81 ALA82 VAL83 ALA84 PRO85 VAL86 SER87 ILE88 LEU89 VAL90 ASN91 SER92 ALA93 GLY94 ILE95 ALA96 ARG97 LEU98 HIS99 ASP100 ALA101 LEU102 GLU103 THR104 ASP105 ASP106 ALA107 THR108 TRP109 ARG110 GLN111 VAL112 MET113 ALA114 VAL115 ASN116 VAL117 ASP118 GLY119 MET120 PHE121 TRP122 ALA123 SER124 ARG125 ALA126 PHE127 GLY128 ARG129 ALA130 MET131 VAL132 ALA133 ARG134 GLY135 ALA136 GLY137 ALA138 ILE139 VAL140 ASN141 LEU142 GLY143 SER144 MET145 SER146 GLY147 THR148 ILE149 VAL150 ASN151 ARG152 PRO153 GLN154 PHE155 ALA156 SER157 SER158 TYR159 MET160 ALA161 SER162 LYS163 GLY164 ALA165 VAL166 HIS167 GLN168 LEU169 THR170 ARG171 ALA172 LEU173 ALA174 ALA175 GLU176 TRP177 ALA178 GLY179 ARG180 GLY181 VAL182 ARG183 VAL184 ASN185 ALA186 LEU187 ALA188 PRO189 GLY190 TYR191 VAL192 ALA193 THR194 GLU195 MET196 THR197 LEU198 LYS199 MET200 ARG201 GLU202 ARG203 PRO204 GLU205 LEU206 PHE207 GLU208 THR209 TRP210 LEU211 ASP212 MET213 THR214 PRO215 MET216 GLY217 ARG218 CYS219 GLY220 GLU221 PRO222 SER223 GLU224 ILE225 ALA226 ALA227 ALA228 ALA229 LEU230 PHE231 LEU232 ALA233 SER234 PRO235 ALA236 ALA237 SER238 TYR239 VAL240 THR241 GLY242 ALA243 ILE244 LEU245 ALA246 VAL247 ASP248 GLY249 GLY250 TYR251 THR252 VAL253 TRP254
Unit 3 MET1 ASP2 TYR3 ARG4 THR5 VAL6 PHE7 ARG8 LEU9 ASP10 GLY11 ALA12 CYS13 ALA14 ALA15 VAL16 THR17 GLY18 ALA19 GLY20 SER21 GLY22 ILE23 GLY24 LEU25 GLU26 ILE27 CYS28 ARG29 ALA30 PHE31 ALA32 ALA33 SER34 GLY35 ALA36 ARG37 LEU38 ILE39 LEU40 ILE41 ASP42 ARG43 GLU44 ALA45 ALA46 ALA47 LEU48 ASP49 ARG50 ALA51 ALA52 GLN53 GLU54 LEU55 GLY56 ALA57 ALA58 VAL59 ALA60 ALA61 ARG62 ILE63 VAL64 ALA65 ASP66 VAL67 THR68 ASP69 ALA70 GLU71 ALA72 MET73 THR74 ALA75 ALA76 ALA77 ALA78 GLU79 ALA80 GLU81 ALA82 VAL83 ALA84 PRO85 VAL86 SER87 ILE88 LEU89 VAL90 ASN91 SER92 ALA93 GLY94 ILE95 ALA96 ARG97 LEU98 HIS99 ASP100 ALA101 LEU102 GLU103 THR104 ASP105 ASP106 ALA107 THR108 TRP109 ARG110 GLN111 VAL112 MET113 ALA114 VAL115 ASN116 VAL117 ASP118 GLY119 MET120 PHE121 TRP122 ALA123 SER124 ARG125 ALA126 PHE127 GLY128 ARG129 ALA130 MET131 VAL132 ALA133 ARG134 GLY135 ALA136 GLY137 ALA138 ILE139 VAL140 ASN141 LEU142 GLY143 SER144 MET145 SER146 GLY147 THR148 ILE149 VAL150 ASN151 ARG152 PRO153 GLN154 PHE155 ALA156 SER157 SER158 TYR159 MET160 ALA161 SER162 LYS163 GLY164 ALA165 VAL166 HIS167 GLN168 LEU169 THR170 ARG171 ALA172 LEU173 ALA174 ALA175 GLU176 TRP177 ALA178 GLY179 ARG180 GLY181 VAL182 ARG183 VAL184 ASN185 ALA186 LEU187 ALA188 PRO189 GLY190 TYR191 VAL192 ALA193 THR194 GLU195 MET196 THR197 LEU198 LYS199 MET200 ARG201 GLU202 ARG203 PRO204 GLU205 LEU206 PHE207 GLU208 THR209 TRP210 LEU211 ASP212 MET213 THR214 PRO215 MET216 GLY217 ARG218 CYS219 GLY220 GLU221 PRO222 SER223 GLU224 ILE225 ALA226 ALA227 ALA228 ALA229 LEU230 PHE231 LEU232 ALA233 SER234 PRO235 ALA236 ALA237 SER238 TYR239 VAL240 THR241 GLY242 ALA243 ILE244 LEU245 ALA246 VAL247 ASP248 GLY249 GLY250 TYR251 THR252 VAL253 TRP254
Unit 4 MET1 ASP2 TYR3 ARG4 THR5 VAL6 PHE7 ARG8 LEU9 ASP10 GLY11 ALA12 CYS13 ALA14 ALA15 VAL16 THR17 GLY18 ALA19 GLY20 SER21 GLY22 ILE23 GLY24 LEU25 GLU26 ILE27 CYS28 ARG29 ALA30 PHE31 ALA32 ALA33 SER34 GLY35 ALA36 ARG37 LEU38 ILE39 LEU40 ILE41 ASP42 ARG43 GLU44 ALA45 ALA46 ALA47 LEU48 ASP49 ARG50 ALA51 ALA52 GLN53 GLU54 LEU55 GLY56 ALA57 ALA58 VAL59 ALA60 ALA61 ARG62 ILE63 VAL64 ALA65 ASP66 VAL67 THR68 ASP69 ALA70 GLU71 ALA72 MET73 THR74 ALA75 ALA76 ALA77 ALA78 GLU79 ALA80 GLU81 ALA82 VAL83 ALA84 PRO85 VAL86 SER87 ILE88 LEU89 VAL90 ASN91 SER92 ALA93 GLY94 ILE95 ALA96 ARG97 LEU98 HIS99 ASP100 ALA101 LEU102 GLU103 THR104 ASP105 ASP106 ALA107 THR108 TRP109 ARG110 GLN111 VAL112 MET113 ALA114 VAL115 ASN116 VAL117 ASP118 GLY119 MET120 PHE121 TRP122 ALA123 SER124 ARG125 ALA126 PHE127 GLY128 ARG129 ALA130 MET131 VAL132 ALA133 ARG134 GLY135 ALA136 GLY137 ALA138 ILE139 VAL140 ASN141 LEU142 GLY143 SER144 MET145 SER146 GLY147 THR148 ILE149 VAL150 ASN151 ARG152 PRO153 GLN154 PHE155 ALA156 SER157 SER158 TYR159 MET160 ALA161 SER162 LYS163 GLY164 ALA165 VAL166 HIS167 GLN168 LEU169 THR170 ARG171 ALA172 LEU173 ALA174 ALA175 GLU176 TRP177 ALA178 GLY179 ARG180 GLY181 VAL182 ARG183 VAL184 ASN185 ALA186 LEU187 ALA188 PRO189 GLY190 TYR191 VAL192 ALA193 THR194 GLU195 MET196 THR197 LEU198 LYS199 MET200 ARG201 GLU202 ARG203 PRO204 GLU205 LEU206 PHE207 GLU208 THR209 TRP210 LEU211 ASP212 MET213 THR214 PRO215 MET216 GLY217 ARG218 CYS219 GLY220 GLU221 PRO222 SER223 GLU224 ILE225 ALA226 ALA227 ALA228 ALA229 LEU230 PHE231 LEU232 ALA233 SER234 PRO235 ALA236 ALA237 SER238 TYR239 VAL240 THR241 GLY242 ALA243 ILE244 LEU245 ALA246 VAL247 ASP248 GLY249 GLY250 TYR251 THR252 VAL253 TRP254

Ligands
Unit 5 MG255 NAD257 MRY258
Unit 6 NAD257 MRY258
Unit 7 MG255 NAD257 MRY258
Unit 8 NAD257 MRY258

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany