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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN MDM2 WITH A 12-MER PEPTIDE INHIBI (N8A MUTANT)
Keywords P53-BINDING PROTEIN OF MDM2, ONCOPROTEIN MDM2, HUMAN DOUBLE PROTEIN, HDM2, MDM2-PEPTIDE INHIBITOR COMPLEX, P53 PEPTIDE N8A-PMI, HOST-VIRUS INTERACTION, LIGASE, METAL-BINDING, NUC PHOSPHOPROTEIN, PROTO-ONCOGENE, UBL CONJUGATION PATHWAY, ZI FINGER, LIGASE-LIGASE INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3LNZ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  A 85 706 0
2  Protein   12-MER PEPTIDE INHIBITOR  B 11 91 0
3  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  C 82 682 0
4  Protein   12-MER PEPTIDE INHIBITOR  D 11 91 0
5  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  E 82 682 0
6  Protein   12-MER PEPTIDE INHIBITOR  F 11 91 0
7  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  G 84 696 0
8  Protein   12-MER PEPTIDE INHIBITOR  H 12 99 0
9  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  I 83 689 0
10  Protein   12-MER PEPTIDE INHIBITOR  J 11 91 0
11  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  K 83 689 0
12  Protein   12-MER PEPTIDE INHIBITOR  L 12 99 0
13  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  M 83 689 0
14  Protein   12-MER PEPTIDE INHIBITOR  N 11 91 0
15  Protein   E3 UBIQUITIN-PROTEIN LIGASE MDM2  O 83 689 0
16  Protein   12-MER PEPTIDE INHIBITOR  P 11 91 0
17  Ligand   E3 UBIQUITIN-PROTEIN LIGASE MDM2  A 1 0 1
18  Ligand   E3 UBIQUITIN-PROTEIN LIGASE MDM2  C 1 0 1
19  Ligand   E3 UBIQUITIN-PROTEIN LIGASE MDM2  E 1 0 1
20  Ligand   E3 UBIQUITIN-PROTEIN LIGASE MDM2  G 1 0 1
21  Ligand   E3 UBIQUITIN-PROTEIN LIGASE MDM2  I 1 0 1
22  Ligand   E3 UBIQUITIN-PROTEIN LIGASE MDM2  K 1 0 1
23  Ligand   E3 UBIQUITIN-PROTEIN LIGASE MDM2  M 2 0 2
24 Water     702 0 702
total       1465 6266 710

Proteins
Unit 1 GLU25 THR26 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108 VAL109
Unit 2 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11
Unit 3 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108
Unit 4 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11
Unit 5 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108
Unit 6 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11
Unit 7 THR26 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108 VAL109
Unit 8 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11 PRO12
Unit 9 THR26 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108
Unit 10 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11
Unit 11 THR26 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108
Unit 12 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11 PRO12
Unit 13 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108 VAL109
Unit 14 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11
Unit 15 THR26 LEU27 VAL28 ARG29 PRO30 LYS31 PRO32 LEU33 LEU34 LEU35 LYS36 LEU37 LEU38 LYS39 SER40 VAL41 GLY42 ALA43 GLN44 LYS45 ASP46 THR47 TYR48 THR49 MET50 LYS51 GLU52 VAL53 LEU54 PHE55 TYR56 LEU57 GLY58 GLN59 TYR60 ILE61 MET62 THR63 LYS64 ARG65 LEU66 TYR67 ASP68 GLU69 LYS70 GLN71 GLN72 HIS73 ILE74 VAL75 TYR76 CYS77 SER78 ASN79 ASP80 LEU81 LEU82 GLY83 ASP84 LEU85 PHE86 GLY87 VAL88 PRO89 SER90 PHE91 SER92 VAL93 LYS94 GLU95 HIS96 ARG97 LYS98 ILE99 TYR100 THR101 MET102 ILE103 TYR104 ARG105 ASN106 LEU107 VAL108
Unit 16 THR1 SER2 PHE3 ALA4 GLU5 TYR6 TRP7 ALA8 LEU9 LEU10 SER11

Ligands
Unit 17 CL5
Unit 18 CL8
Unit 19 CL2
Unit 20 CL4
Unit 21 CL1
Unit 22 CL7
Unit 23 CL3 CL6

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany