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Sequence, Chains, Asymmetric and Biological Units

Title SMALL MOLECULE INHIBITION OF THE TNF FAMILY CYOKINE CD40 LIG THROUGH A SUBUNIT FRACTURE MECHANISM
Keywords CD40L, CD154, TNF-FAMILY CYTOKINE, PROTEIN-PROTEIN INTERACTI MEMBRANE, CYTOKINE, DISEASE MUTATION, DISULFIDE BOND, GLYCO MEMBRANE, PHOSPHOPROTEIN, SECRETED, SIGNAL-ANCHOR, TRANSMEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3LKJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CD40 LIGAND  A 133 1012 0
2  Protein   CD40 LIGAND  B 132 1005 0
3  Protein   CD40 LIGAND  C 129 986 0
4  Ligand   CD40 LIGAND  A 2 0 28
5  Ligand   CD40 LIGAND  B 2 0 28
6  Ligand   CD40 LIGAND  C 3 0 95
7 Water     72 0 72
total       473 3003 223
Proteins
Unit 1 GLN121 ILE122 ALA123 ALA124 HIS125 VAL126 ILE127 SER128 GLU129 ALA130 SER131 SER132 LYS133 THR134 THR135 SER136 VAL137 LEU138 GLN139 TRP140 ALA141 GLU142 LYS143 GLY144 TYR145 TYR146 THR147 MET148 SER149 ASN150 ASN151 LEU152 VAL153 THR154 LEU155 GLU156 ASN157 GLY158 LYS159 GLN160 LEU161 THR162 VAL163 LYS164 ARG165 GLN166 GLY167 LEU168 TYR169 TYR170 ILE171 TYR172 ALA173 GLN174 VAL175 THR176 PHE177 CYS178 ALA183 SER184 SER185 GLN186 ALA187 PRO188 PHE189 ILE190 ALA191 SER192 LEU193 CYS194 LEU195 LYS196 SER197 PRO198 GLY199 ARG200 PHE201 GLU202 ARG203 ILE204 LEU205 LEU206 ARG207 ALA208 ALA209 ASN210 THR211 LYS216 PRO217 CYS218 GLY219 GLN220 GLN221 SER222 ILE223 HIS224 LEU225 GLY226 GLY227 VAL228 PHE229 GLU230 LEU231 GLN232 PRO233 GLY234 ALA235 SER236 VAL237 PHE238 VAL239 ASN240 VAL241 THR242 ASP243 PRO244 SER245 GLN246 VAL247 SER248 HIS249 GLY250 THR251 GLY252 PHE253 THR254 SER255 PHE256 GLY257 LEU258 LEU259 LYS260 LEU261
Unit 2 GLN121 ILE122 ALA123 ALA124 HIS125 VAL126 ILE127 SER128 GLU129 ALA130 SER131 THR135 SER136 VAL137 LEU138 GLN139 TRP140 ALA141 GLU142 LYS143 GLY144 TYR145 TYR146 THR147 MET148 SER149 ASN150 ASN151 LEU152 VAL153 THR154 LEU155 GLU156 ASN157 GLY158 LYS159 GLN160 LEU161 THR162 VAL163 LYS164 ARG165 GLN166 GLY167 LEU168 TYR169 TYR170 ILE171 TYR172 ALA173 GLN174 VAL175 THR176 PHE177 CYS178 SER179 ASN180 ALA187 PRO188 PHE189 ILE190 ALA191 SER192 LEU193 CYS194 LEU195 LYS196 SER197 PRO198 GLY199 ARG200 PHE201 GLU202 ARG203 ILE204 LEU205 LEU206 ARG207 ALA208 ALA209 ASN210 THR211 HIS212 SER213 SER214 ALA215 LYS216 PRO217 CYS218 GLY219 GLN220 GLN221 SER222 ILE223 HIS224 LEU225 GLY226 GLY227 VAL228 PHE229 GLU230 LEU231 GLN232 PRO233 GLY234 ALA235 SER236 VAL237 PHE238 VAL239 ASN240 VAL241 THR242 ASP243 PRO244 SER245 GLN246 VAL247 SER248 HIS249 GLY250 THR251 GLY252 PHE253 THR254 SER255 PHE256 GLY257 LEU258 LEU259 LYS260 LEU261
Unit 3 GLN121 ILE122 ALA123 ALA124 HIS125 VAL126 ILE127 SER128 GLU129 ALA130 SER131 SER132 LYS133 THR134 THR135 SER136 VAL137 LEU138 GLN139 TRP140 ALA141 GLU142 LYS143 GLY144 TYR145 TYR146 THR147 MET148 SER149 ASN150 ASN151 LEU152 VAL153 THR154 LEU155 GLU156 ASN157 GLY158 LYS159 GLN160 LEU161 THR162 VAL163 LYS164 ARG165 GLN166 GLY167 LEU168 TYR169 TYR170 ILE171 TYR172 ALA173 GLN174 VAL175 THR176 PHE177 CYS178 SER179 ASN180 PRO188 PHE189 ILE190 ALA191 SER192 LEU193 CYS194 LEU195 LYS196 SER197 PRO198 GLY199 ARG200 PHE201 GLU202 ARG203 ILE204 LEU205 LEU206 ARG207 ALA208 ALA209 ASN210 THR211 PRO217 CYS218 GLY219 GLN220 GLN221 SER222 ILE223 HIS224 LEU225 GLY226 GLY227 VAL228 PHE229 GLU230 LEU231 GLN232 PRO233 GLY234 ALA235 SER236 VAL237 PHE238 VAL239 ASN240 VAL241 THR242 ASP243 PRO244 SER245 GLN246 VAL247 SER248 HIS249 GLY250 THR251 GLY252 PHE253 THR254 SER255 PHE256 GLY257 LEU258 LEU259 LYS260 LEU261
Ligands
Unit 4 NAG2 NAG3
Unit 5 NAG2 NAG3
Unit 6 LKJ1 NAG2 NAG3
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany