3LEY - Sequence, Chains, Asymmetric and Biological Units

• Title: 2F5 EPITOPE SCAFFOLD ELICITED ANTI-HIV-1 MONOCLONAL ANTIBODY COMPLEX WITH HIV-1 GP41
• Keywords: HIV-1, GP-41, MONOCLONAL ANTIBODY, 2F5, SCAFFOLD, EPITOPE, TRANSPLANT, GRAFT, RE-ELCITATION, ENVELOPE PROTEIN, IMMUNE VACCINE DESIGN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3LEY	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	6A7 ANTIBODY HEAVY CHAIN	H	217	1652	0
2	Protein	6A7 ANTIBODY LIGHT CHAIN	L	216	1680	0
3	Protein	ENVELOPE GLYCOPROTEIN GP41	P	9	69	1
4	Ligand	6A7 ANTIBODY HEAVY CHAIN	H	2	0	2
5	Ligand	6A7 ANTIBODY LIGHT CHAIN	L	1	0	1
6	Water			331	0	331
total				776	3401	335

Proteins

Unit 1	ASP 1 VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 LYS 13 PRO 14 SER 15 GLN 16 SER 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 THR 23 VAL 24 THR 25 GLY 26 TYR 27 LEU 28 ILE 29 THR 30 THR 31 ASP 32 TYR 33 ALA 34 TRP 35 ASN 35A TRP 36 ILE 37 ARG 38 GLN 39 PHE 40 PRO 41 GLY 42 ASN 43 LYS 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 TYR 50 ILE 51 SER 52 TYR 53 SER 54 GLY 55 PHE 56 THR 57 SER 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 GLN 66 ILE 67 SER 68 ILE 69 THR 70 ARG 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 GLN 77 PHE 78 PHE 79 LEU 80 GLN 81 LEU 82 ASN 82A SER 82B VAL 82C THR 83 THR 84 GLU 85 ASP 86 THR 87 ALA 88 THR 89 TYR 90 TYR 91 CYS 92 ALA 93 PHE 94 GLY 95 ASN 96 TYR 97 LEU 98 PRO 99 ALA 100 TYR 101 TRP 102 GLY 103 GLN 104 GLY 105 THR 106 LEU 107 VAL 108 THR 109 VAL 110 SER 111 ALA 112 ALA 113 LYS 114 THR 115 THR 116 ALA 117 PRO 118 SER 119 VAL 120 TYR 121 PRO 122 LEU 123 ALA 124 PRO 125 VAL 126 CYS 127 GLY 128 GLY 132 SER 133 SER 134 VAL 135 THR 136 LEU 137 GLY 138 CYS 139 LEU 140 VAL 141 LYS 142 GLY 143 TYR 144 PHE 145 PRO 146 GLU 147 PRO 148 VAL 149 THR 150 LEU 151 THR 152 TRP 153 ASN 154 SER 155 GLY 156 SER 157 LEU 158 SER 159 SER 160 GLY 161 VAL 162 HIS 163 THR 164 PHE 165 PRO 166 ALA 167 VAL 168 LEU 169 GLN 170 SER 171 ASP 172 LEU 173 TYR 174 THR 175 LEU 176 SER 177 SER 178 SER 179 VAL 180 THR 181 VAL 182 THR 183 SER 184 SER 185 THR 186 TRP 187 PRO 188 SER 189 GLN 190 SER 191 ILE 192 THR 193 CYS 194 ASN 195 VAL 196 ALA 197 HIS 198 PRO 199 ALA 200 SER 201 SER 202 THR 203 LYS 204 VAL 205 ASP 206 LYS 207 LYS 208 ILE 209 GLU 210 PRO 211 ARG 212 GLY 213 PRO 214 THR 215 ILE 216
Unit 2	ASP 1 VAL 2 VAL 3 MET 4 THR 5 GLN 6 THR 7 PRO 8 LEU 9 SER 10 LEU 11 SER 12 VAL 13 THR 14 LEU 15 GLY 16 GLN 17 PRO 18 ALA 19 SER 20 ILE 21 SER 22 CYS 23 LYS 24 SER 25 SER 26 GLN 27 SER 28 LEU 29 LEU 30 ASP 31 SER 32 ASP 33 GLY 34 LYS 35 THR 36 TYR 37 LEU 38 ASN 39 TRP 40 LEU 41 LEU 42 GLN 43 ARG 44 PRO 45 GLY 46 GLN 47 SER 48 PRO 49 LYS 50 ARG 51 LEU 52 ILE 53 TYR 54 LEU 55 VAL 56 SER 57 LYS 58 LEU 59 ALA 60 SER 61 GLY 62 VAL 63 PRO 64 ASP 65 ARG 66 PHE 67 THR 68 GLY 69 SER 70 GLY 71 SER 72 GLY 73 THR 74 ASP 75 PHE 76 THR 77 LEU 78 LYS 79 ILE 80 ASN 81 ARG 82 VAL 83 GLU 84 ALA 85 GLU 86 ASP 87 LEU 88 GLY 89 ILE 90 TYR 91 TYR 92 CYS 93 TRP 94 GLN 95 GLY 96 THR 97 HIS 98 PHE 99 PRO 100 TRP 101 THR 102 PHE 103 GLY 104 GLY 105 GLY 106 THR 107 LYS 108 LEU 109 GLU 110 ILE 111 LYS 112 ARG 113 ALA 114 ASP 115 ALA 116 ALA 117 PRO 118 THR 119 VAL 120 SER 121 ILE 122 PHE 123 PRO 124 PRO 125 SER 126 SER 127 GLU 128 GLN 129 LEU 130 THR 131 SER 132 GLY 133 GLY 134 ALA 135 SER 136 VAL 137 VAL 138 CYS 139 PHE 140 LEU 141 ASN 142 ASN 143 PHE 144 TYR 145 PRO 146 LYS 147 ASP 148 ILE 149 ASN 150 VAL 151 LYS 152 TRP 153 LYS 154 ILE 155 ASP 156 GLY 157 SER 158 GLU 159 ARG 160 GLN 161 ASN 162 GLY 163 VAL 164 LEU 165 ASN 166 SER 167 TRP 168 THR 169 ASP 170 GLN 171 ASP 172 SER 173 LYS 174 ASP 175 SER 176 THR 177 TYR 178 SER 179 MET 180 SER 181 SER 182 THR 183 LEU 184 THR 185 LEU 186 THR 187 LYS 188 ASP 189 GLU 190 TYR 191 GLU 192 ARG 193 HIS 194 ASN 195 SER 196 TYR 197 THR 198 CYS 199 GLU 200 ALA 201 THR 202 HIS 203 LYS 204 SER 208 PRO 209 ILE 210 VAL 211 LYS 212 SER 213 PHE 214 ASN 215 ARG 216 ASN 217 GLU 218 CYS 219
Unit 3	LEU 660 LEU 661 GLU 662 LEU 663 ASP 664 LYS 665 TRP 666 ALA 667 NH2 668

Ligands

Unit 4	ZN 222 ZN 223
Unit 5	ZN 233