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Sequence, Chains, Asymmetric and Biological Units

Title 2F5 EPITOPE SCAFFOLD ES2
Keywords HIV-1, GP41, MONOCLONAL ANTIBODY, 2F5, EPITOPE, TRANSPLANT, GRAFT, SIGMA FACTOR, RE-ELICITATION, IMMUNE SYSTEM, VACCINE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3LES     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA POLYMERASE SIGMA FACTOR  A 179 1424 0
2  Protein   RNA POLYMERASE SIGMA FACTOR  B 177 1408 0
3  Ligand   RNA POLYMERASE SIGMA FACTOR  A 3 0 15
4  Ligand   RNA POLYMERASE SIGMA FACTOR  B 1 0 5
5 Water     28 0 28
total       388 2832 48

Proteins
Unit 1 SER93 ASP94 PRO95 VAL96 ARG97 GLN98 TYR99 LEU100 HIS101 GLU102 ILE103 GLY104 GLU105 VAL106 LEU107 GLU108 LEU109 ASP110 LYS111 TRP112 ALA113 GLU114 LEU115 GLY116 ALA117 ALA118 ALA119 LYS120 VAL121 GLU122 GLU123 GLY124 MET125 GLU126 ALA127 ILE128 LYS129 LYS130 LEU131 SER132 GLU133 ALA134 THR135 GLY136 LEU137 ASP138 GLN139 GLU140 LEU141 ILE142 ARG143 GLU144 VAL145 VAL146 ARG147 ALA148 LYS149 ILE150 LEU151 GLY152 THR153 ALA154 ALA155 ILE156 GLN157 LYS158 ILE159 PRO160 GLY161 LEU162 LYS163 GLU164 LYS165 PRO166 ASP167 PRO168 LYS169 THR170 VAL171 GLU172 GLU173 VAL174 ASP175 GLY176 LYS177 LEU178 LYS179 SER180 LEU181 PRO182 LYS183 GLU184 LEU185 LYS186 ARG187 TYR188 LEU189 HIS190 ILE191 ALA192 ARG193 GLU194 GLY195 GLU196 ALA197 ALA198 ARG199 GLN200 HIS201 LEU202 ILE203 GLU204 ALA205 ASN206 LEU207 ARG208 LEU209 VAL210 VAL211 SER212 ILE213 ALA214 LYS215 LYS216 TYR217 THR218 GLY219 ARG220 GLY221 LEU222 SER223 PHE224 LEU225 ASP226 LEU227 ILE228 GLN229 GLU230 GLY231 ASN232 GLN233 GLY234 LEU235 ILE236 ARG237 ALA238 VAL239 GLU240 LYS241 PHE242 GLU243 TYR244 LYS245 ARG246 GLY247 PHE248 ALA249 PHE250 SER251 THR252 TYR253 ALA254 THR255 TRP256 TRP257 ILE258 ARG259 GLN260 ALA261 ILE262 ASN263 ARG264 ALA265 ILE266 ALA267 ASP268 GLN269 ALA270 ARG271
Unit 2 SER93 ASP94 PRO95 VAL96 ARG97 GLN98 TYR99 LEU100 HIS101 GLU102 ILE103 GLY104 GLU105 VAL106 LEU107 GLU108 LEU109 ASP110 LYS111 TRP112 ALA113 GLU114 LEU115 GLY116 ALA117 ALA118 ALA119 LYS120 VAL121 GLU122 GLU123 GLY124 MET125 GLU126 ALA127 ILE128 LYS129 LYS130 LEU131 SER132 GLU133 ALA134 THR135 GLY136 LEU137 ASP138 GLN139 GLU140 LEU141 ILE142 ARG143 GLU144 VAL145 VAL146 ARG147 ALA148 LYS149 ILE150 LEU151 GLY152 THR153 ALA154 ALA155 ILE156 GLN157 LYS158 ILE159 PRO160 GLY161 LEU162 LYS163 GLU164 LYS165 PRO166 ASP167 PRO168 LYS169 THR170 VAL171 GLU172 GLU173 VAL174 ASP175 GLY176 LYS177 LEU178 LYS179 SER180 LEU181 PRO182 LYS183 GLU184 LEU185 LYS186 ARG187 TYR188 LEU189 HIS190 ILE191 ALA192 ARG193 GLU194 GLY195 GLU196 ALA197 ALA198 ARG199 GLN200 HIS201 LEU202 ILE203 GLU204 ALA205 ASN206 LEU207 ARG208 LEU209 VAL210 VAL211 SER212 ILE213 ALA214 LYS215 LYS216 TYR217 THR218 GLY219 ARG220 GLY221 LEU222 SER223 PHE224 LEU225 ASP226 LEU227 ILE228 GLN229 GLU230 GLY231 ASN232 GLN233 GLY234 LEU235 ILE236 ARG237 ALA238 VAL239 GLU240 LYS241 PHE242 GLU243 TYR244 LYS245 ARG246 GLY247 PHE248 ALA249 PHE250 SER251 THR252 TYR253 ALA254 THR255 TRP256 TRP257 ILE258 ARG259 GLN260 ALA261 ILE262 ASN263 ARG264 ALA265 ILE266 ALA267 ASP268 GLN269

Ligands
Unit 3 SO41 SO42 SO43
Unit 4 SO44

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany