3LDB - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF JMJD6 COMPLEXD WITH ALPHA-KETOGLUTARATE AND FAB
• Keywords: JMJ6D, ALPHA-KETOGLUTARATE, FAB FRAGMENTS, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3LDB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDRO JMJD6	A	334	2788	0
2	Protein	ANTIBODY FAB FRAGMENT LIGHT CHAIN	B	217	1666	0
3	Protein	ANTIBODY FAB FRAGMENT HEAVY CHAIN	C	210	1618	0
4	Ligand	BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDRO JMJD6	A	4	0	24
5	Ligand	ANTIBODY FAB FRAGMENT LIGHT CHAIN	B	1	0	6
6	Ligand	BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDRO JMJD6	A	1	0	5
7	Ligand	ANTIBODY FAB FRAGMENT HEAVY CHAIN	C	1	0	5
8	Ligand	BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDRO JMJD6	A	4	0	20
9	Ligand	ANTIBODY FAB FRAGMENT LIGHT CHAIN	B	1	0	5
10	Ligand	BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDRO JMJD6	A	7	0	35
11	Ligand	ANTIBODY FAB FRAGMENT LIGHT CHAIN	B	1	0	5
12	Ligand	ANTIBODY FAB FRAGMENT HEAVY CHAIN	C	2	0	10
13	Ligand	BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDRO JMJD6	A	1	0	5
14	Ligand	ANTIBODY FAB FRAGMENT LIGHT CHAIN	B	1	0	5
15	Ligand	BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDRO JMJD6	A	4	0	13
total				789	6072	138

Proteins

Unit 1	MET 1 ASN 2 HIS 3 LYS 4 SER 5 LYS 6 LYS 7 ARG 8 ILE 9 ARG 10 GLU 11 ALA 12 LYS 13 ARG 14 SER 15 ALA 16 ARG 17 PRO 18 GLU 19 LEU 20 LYS 21 ASP 22 SER 23 LEU 24 ASP 25 TRP 26 THR 27 ARG 28 HIS 29 ASN 30 TYR 31 TYR 32 GLU 33 SER 34 PHE 35 SER 36 LEU 37 SER 38 PRO 39 ALA 40 ALA 41 VAL 42 ALA 43 ASP 44 ASN 45 VAL 46 GLU 47 ARG 48 ALA 49 ASP 50 ALA 51 LEU 52 GLN 53 LEU 54 SER 55 VAL 56 GLU 57 GLU 58 PHE 59 VAL 60 GLU 61 ARG 62 TYR 63 GLU 64 ARG 65 PRO 66 TYR 67 LYS 68 PRO 69 VAL 70 VAL 71 LEU 72 LEU 73 ASN 74 ALA 75 GLN 76 GLU 77 GLY 78 TRP 79 SER 80 ALA 81 GLN 82 GLU 83 LYS 84 TRP 85 THR 86 LEU 87 GLU 88 ARG 89 LEU 90 LYS 91 ARG 92 LYS 93 TYR 94 ARG 95 ASN 96 GLN 97 LYS 98 PHE 99 LYS 100 CYS 101 GLY 102 GLU 103 ASP 104 ASN 105 ASP 106 GLY 107 TYR 108 SER 109 VAL 110 LYS 111 MET 112 LYS 113 MET 114 LYS 115 TYR 116 TYR 117 ILE 118 GLU 119 TYR 120 MET 121 GLU 122 SER 123 THR 124 ARG 125 ASP 126 ASP 127 SER 128 PRO 129 LEU 130 TYR 131 ILE 132 PHE 133 ASP 134 SER 135 SER 136 TYR 137 GLY 138 GLU 139 HIS 140 PRO 141 LYS 142 ARG 143 ARG 144 LYS 145 LEU 146 LEU 147 GLU 148 ASP 149 TYR 150 LYS 151 VAL 152 PRO 153 LYS 154 PHE 155 PHE 156 THR 157 ASP 158 ASP 159 LEU 160 PHE 161 GLN 162 TYR 163 ALA 164 GLY 165 GLU 166 LYS 167 ARG 168 ARG 169 PRO 170 PRO 171 TYR 172 ARG 173 TRP 174 PHE 175 VAL 176 MET 177 GLY 178 PRO 179 PRO 180 ARG 181 SER 182 GLY 183 THR 184 GLY 185 ILE 186 HIS 187 ILE 188 ASP 189 PRO 190 LEU 191 GLY 192 THR 193 SER 194 ALA 195 TRP 196 ASN 197 ALA 198 LEU 199 VAL 200 GLN 201 GLY 202 HIS 203 LYS 204 ARG 205 TRP 206 CYS 207 LEU 208 PHE 209 PRO 210 THR 211 SER 212 THR 213 PRO 214 ARG 215 GLU 216 LEU 217 ILE 218 LYS 219 VAL 220 THR 221 ARG 222 ASP 223 GLU 224 GLY 225 GLY 226 ASN 227 GLN 228 GLN 229 ASP 230 GLU 231 ALA 232 ILE 233 THR 234 TRP 235 PHE 236 ASN 237 VAL 238 ILE 239 TYR 240 PRO 241 ARG 242 THR 243 GLN 244 LEU 245 PRO 246 THR 247 TRP 248 PRO 249 PRO 250 GLU 251 PHE 252 LYS 253 PRO 254 LEU 255 GLU 256 ILE 257 LEU 258 GLN 259 LYS 260 PRO 261 GLY 262 GLU 263 THR 264 VAL 265 PHE 266 VAL 267 PRO 268 GLY 269 GLY 270 TRP 271 TRP 272 HIS 273 VAL 274 VAL 275 LEU 276 ASN 277 LEU 278 ASP 279 THR 280 THR 281 ILE 282 ALA 283 ILE 284 THR 285 GLN 286 ASN 287 PHE 288 ALA 289 SER 290 SER 291 THR 292 ASN 293 PHE 294 PRO 295 VAL 296 VAL 297 TRP 298 HIS 299 LYS 300 THR 301 VAL 302 ARG 303 GLY 304 ARG 305 PRO 306 LYS 307 LEU 308 SER 309 ARG 310 LYS 311 TRP 312 TYR 313 ARG 314 ILE 315 LEU 316 LYS 317 GLN 318 GLU 319 HIS 320 PRO 321 GLU 322 LEU 323 ALA 324 VAL 325 LEU 326 ALA 327 ASP 328 SER 329 VAL 330 ASP 331 LEU 332 GLN 333 GLU 334
Unit 2	ASP 1 ILE 2 VAL 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 ALA 12 VAL 13 SER 14 ALA 15 GLY 16 GLU 17 LYS 18 VAL 19 THR 20 MET 21 SER 22 CYS 23 ARG 24 SER 25 SER 26 GLN 27 SER 28 LEU 29 TYR 30 TYR 31 SER 32 GLY 33 ILE 34 LYS 35 LYS 36 ASN 37 LEU 38 LEU 39 ALA 40 TRP 41 TYR 42 GLN 43 LEU 44 LYS 45 PRO 46 GLY 47 GLN 48 SER 49 PRO 50 LYS 51 LEU 52 LEU 53 ILE 54 TYR 55 TYR 56 ALA 57 SER 58 THR 59 LEU 60 PHE 61 THR 62 GLY 63 VAL 64 PRO 65 ASP 66 ARG 67 PHE 68 THR 69 GLY 70 SER 71 GLY 72 SER 73 GLY 74 THR 75 ASP 76 TYR 77 THR 78 LEU 79 THR 80 ILE 81 THR 82 SER 83 VAL 84 GLN 85 ALA 86 GLU 87 ASP 88 MET 89 GLY 90 GLN 91 TYR 92 PHE 93 CYS 94 GLN 95 GLN 96 GLY 97 ILE 98 SER 99 ASN 100 PRO 101 TYR 102 THR 103 PHE 104 GLY 105 ALA 106 GLY 107 THR 108 LYS 109 LEU 110 GLU 111 ILE 112 LYS 113 ARG 114 ALA 115 ASP 116 ALA 117 LYS 118 PRO 119 THR 120 VAL 121 SER 122 ILE 123 PHE 124 PRO 125 PRO 126 SER 127 SER 128 GLU 129 GLN 130 LEU 131 GLY 132 THR 133 GLY 134 SER 135 ALA 136 THR 137 LEU 138 VAL 139 CYS 140 PHE 141 VAL 142 ASN 143 ASN 144 PHE 145 TYR 146 PRO 147 LYS 148 ASP 149 ILE 150 ASN 151 VAL 152 LYS 153 TRP 154 LYS 155 VAL 156 ASP 157 GLY 158 SER 159 GLU 160 LYS 161 ARG 162 ASP 163 GLY 164 VAL 165 LEU 166 GLN 167 SER 168 VAL 169 THR 170 ASP 171 GLN 172 ASP 173 SER 174 LYS 175 ASP 176 SER 177 THR 178 TYR 179 SER 180 LEU 181 SER 182 SER 183 THR 184 LEU 185 SER 186 LEU 187 THR 188 LYS 189 ALA 190 ASP 191 TYR 192 GLU 193 ARG 194 HIS 195 ASN 196 LEU 197 TYR 198 THR 199 CYS 200 GLU 201 VAL 202 THR 203 HIS 204 LYS 205 THR 206 SER 207 THR 208 ALA 209 ALA 210 ILE 211 VAL 212 LYS 213 THR 214 LEU 215 ASN 216 ARG 217
Unit 3	GLN 1 ILE 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 THR 13 PRO 14 SER 15 GLN 16 SER 17 LEU 18 THR 19 LEU 20 THR 21 CYS 22 SER 23 VAL 24 THR 25 GLY 26 ASP 27 SER 28 ILE 29 THR 30 SER 31 TYR 32 HIS 33 TRP 34 SER 35 TRP 36 ILE 37 ARG 38 GLN 39 PHE 40 PRO 41 GLY 42 LYS 43 LYS 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 TYR 50 ILE 51 TYR 52 ASN 53 SER 54 GLY 55 GLY 56 THR 57 ASP 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 ARG 66 VAL 67 SER 68 ILE 69 THR 70 ARG 71 GLU 72 ILE 73 SER 74 ARG 75 ASN 76 GLN 77 LEU 78 PHE 79 LEU 80 GLN 81 LEU 82 ASN 83 SER 84 VAL 85 THR 86 THR 87 GLU 88 ASP 89 THR 90 ALA 91 THR 92 TYR 93 TYR 94 CYS 95 ALA 96 ARG 97 ARG 98 ASP 99 TYR 100 GLY 101 THR 102 TYR 103 TYR 104 PHE 105 ASP 106 TYR 107 TRP 108 GLY 109 GLN 110 GLY 111 THR 112 MET 113 VAL 114 THR 115 VAL 116 SER 117 SER 118 ALA 119 THR 120 THR 121 THR 122 ALA 123 PRO 124 SER 125 VAL 126 TYR 127 PRO 128 LEU 129 ALA 130 PRO 131 ASN 141 THR 142 VAL 143 THR 144 LEU 145 GLY 146 CYS 147 LEU 148 VAL 149 LYS 150 GLY 151 TYR 152 PHE 153 PRO 154 GLU 155 PRO 156 VAL 157 THR 158 VAL 159 SER 160 TRP 161 ASN 162 SER 163 GLY 164 ALA 165 LEU 166 THR 167 SER 168 GLY 169 VAL 170 HIS 171 THR 172 PHE 173 PRO 174 SER 175 VAL 176 LEU 177 HIS 178 SER 179 GLY 180 LEU 181 TYR 182 SER 183 LEU 184 SER 185 SER 186 SER 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 THR 194 TRP 195 PRO 196 SER 197 GLN 198 THR 199 VAL 200 THR 201 CYS 202 ASN 203 VAL 204 ALA 205 HIS 206 PRO 207 ALA 208 SER 209 SER 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 ILE 217 VAL 218 PRO 219

Ligands

Unit 4	GOL 335 GOL 336 GOL 337 GOL 338
Unit 5	GOL 221
Unit 6	SO4 339
Unit 7	SO4 222
Unit 8	SO4 340 SO4 341 SO4 342 SO4 343
Unit 9	SO4 222
Unit 10	SO4 344 SO4 345 SO4 346 SO4 347 SO4 348 SO4 349 SO4 350
Unit 11	SO4 223
Unit 12	SO4 223 SO4 224
Unit 13	SO4 351
Unit 14	SO4 224
Unit 15	HG 352 HG 353 AKG 600 FE 601