3LD9 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM EHRLICHIA CHAFF 2.15A RESOLUTION
• Keywords: SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, EHRLICH CHAFFEENSIS, THYMIDYLATE KINASE, ALS COLLABORATIVE CRYSTALL ATP-BINDING, KINASE, NUCLEOTIDE BIOSYNTHESIS, NUCLEOTIDE-BI TRANSFERASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMI FOR INFECTIOUS DISEASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3LD9	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THYMIDYLATE KINASE	A	187	1465	0
2	Protein	THYMIDYLATE KINASE	B	178	1422	0
3	Protein	THYMIDYLATE KINASE	C	175	1347	0
4	Protein	THYMIDYLATE KINASE	D	184	1466	0
5	Ligand	THYMIDYLATE KINASE	A	1	0	5
6	Ligand	THYMIDYLATE KINASE	B	2	0	9
7	Ligand	THYMIDYLATE KINASE	C	1	0	5
8	Ligand	THYMIDYLATE KINASE	D	2	0	9
9	Water			301	0	301
total				1031	5700	329

Proteins

Unit 1	PRO -2 GLY -1 SER 0 MET 1 PHE 2 ILE 3 THR 4 PHE 5 GLU 6 GLY 7 ILE 8 ASP 9 GLY 10 SER 11 GLY 12 LYS 13 THR 14 THR 15 GLN 16 SER 17 HIS 18 LEU 19 LEU 20 ALA 21 GLU 22 TYR 23 LEU 24 SER 25 GLU 26 ILE 27 TYR 28 GLY 29 VAL 30 ASN 31 ASN 32 VAL 33 VAL 34 LEU 35 THR 36 ARG 37 GLU 38 PRO 39 GLY 40 GLY 41 THR 42 LEU 43 LEU 44 ASN 45 GLU 46 SER 47 VAL 48 ARG 49 ASN 50 LEU 51 LEU 52 PHE 53 LYS 54 ALA 55 GLN 56 GLY 57 LEU 58 ASP 59 SER 60 LEU 61 SER 62 GLU 63 LEU 64 LEU 65 PHE 66 PHE 67 ILE 68 ALA 69 MET 70 ARG 71 ARG 72 GLU 73 HIS 74 PHE 75 VAL 76 LYS 77 ILE 78 ILE 79 LYS 80 PRO 81 SER 82 LEU 83 MET 84 GLN 85 LYS 86 LYS 87 ILE 88 VAL 89 ILE 90 CYS 91 ASP 92 ARG 93 PHE 94 ILE 95 ASP 96 SER 97 THR 98 ILE 99 ALA 100 TYR 101 GLN 102 GLY 103 TYR 104 GLY 105 GLN 106 GLY 107 ILE 108 ASP 109 CYS 110 SER 111 LEU 112 ILE 113 ASP 114 GLN 115 LEU 116 ASN 117 ASP 118 LEU 119 VAL 120 ILE 121 ASP 122 VAL 123 TYR 124 PRO 125 ASP 126 ILE 127 THR 128 PHE 129 ILE 130 ILE 131 ASP 132 VAL 133 ASP 134 ASP 151 MET 152 GLU 153 PHE 154 TYR 155 TYR 156 ARG 157 VAL 158 ARG 159 ASP 160 GLY 161 PHE 162 TYR 163 ASP 164 ILE 165 ALA 166 LYS 167 LYS 168 ASN 169 PRO 170 HIS 171 ARG 172 CYS 173 HIS 174 VAL 175 ILE 176 THR 177 ASP 178 LYS 179 SER 180 GLU 181 THR 182 TYR 183 ASP 184 ILE 185 ASP 186 ASP 187 ILE 188 ASN 189 PHE 190 VAL 191 HIS 192 LEU 193 GLU 194 VAL 195 ILE 196 LYS 197 VAL 198 LEU 199 GLN 200
Unit 2	PRO -2 GLY -1 SER 0 MET 1 PHE 2 ILE 3 THR 4 PHE 5 GLU 6 GLY 7 ILE 8 ASP 9 GLY 10 SER 11 GLY 12 LYS 13 THR 14 THR 15 GLN 16 SER 17 HIS 18 LEU 19 LEU 20 ALA 21 GLU 22 TYR 23 LEU 24 SER 25 GLU 26 ILE 27 TYR 28 GLY 29 VAL 30 ASN 31 ASN 32 VAL 33 VAL 34 LEU 35 THR 36 ARG 37 GLU 38 PRO 39 GLY 40 GLY 41 THR 42 LEU 43 LEU 44 ASN 45 GLU 46 SER 47 VAL 48 ARG 49 ASN 50 LEU 51 LEU 52 PHE 53 LYS 54 ALA 55 GLN 56 GLY 57 LEU 58 ASP 59 SER 60 LEU 61 SER 62 GLU 63 LEU 64 LEU 65 PHE 66 PHE 67 ILE 68 ALA 69 MET 70 ARG 71 ARG 72 GLU 73 HIS 74 PHE 75 VAL 76 LYS 77 ILE 78 ILE 79 LYS 80 PRO 81 SER 82 LEU 83 MET 84 GLN 85 LYS 86 LYS 87 ILE 88 VAL 89 ILE 90 CYS 91 ASP 92 ARG 93 PHE 94 ILE 95 ASP 96 SER 97 THR 98 ILE 99 ALA 100 TYR 101 GLN 102 GLY 103 TYR 104 GLY 105 GLN 106 GLY 107 ILE 108 ASP 109 CYS 110 SER 111 LEU 112 ILE 113 ASP 114 GLN 115 LEU 116 ASN 117 ASP 118 LEU 119 VAL 120 ILE 121 ASP 122 VAL 123 TYR 124 PRO 125 ASP 126 ILE 127 THR 128 PHE 129 ILE 130 ILE 131 ASP 132 VAL 133 ASP 151 MET 152 GLU 153 PHE 154 TYR 155 TYR 156 ARG 157 VAL 158 ARG 159 ASP 160 GLY 161 PHE 162 TYR 163 ASP 164 ILE 165 ALA 166 LYS 167 LYS 168 ASN 169 PRO 170 HIS 171 ARG 172 CYS 173 HIS 174 VAL 175 ILE 176 THR 177 ASP 178 ILE 188 ASN 189 PHE 190 VAL 191 HIS 192 LEU 193 GLU 194 VAL 195 ILE 196 LYS 197 VAL 198 LEU 199 GLN 200 MET 201
Unit 3	PRO -2 GLY -1 SER 0 MET 1 PHE 2 ILE 3 THR 4 PHE 5 GLU 6 GLY 7 ILE 8 ASP 9 GLY 10 SER 11 GLY 12 LYS 13 THR 14 THR 15 GLN 16 SER 17 HIS 18 LEU 19 LEU 20 ALA 21 GLU 22 TYR 23 LEU 24 SER 25 GLU 26 ILE 27 TYR 28 GLY 29 VAL 30 ASN 31 ASN 32 VAL 33 VAL 34 LEU 35 THR 36 ARG 37 GLU 38 PRO 39 GLY 40 GLY 41 THR 42 LEU 43 LEU 44 ASN 45 GLU 46 SER 47 VAL 48 ARG 49 ASN 50 LEU 51 LEU 52 PHE 53 LYS 54 ALA 55 GLN 56 GLY 57 LEU 58 ASP 59 SER 60 LEU 61 SER 62 GLU 63 LEU 64 LEU 65 PHE 66 PHE 67 ILE 68 ALA 69 MET 70 ARG 71 ARG 72 GLU 73 HIS 74 PHE 75 VAL 76 LYS 77 ILE 78 ILE 79 LYS 80 PRO 81 SER 82 LEU 83 MET 84 GLN 85 LYS 86 LYS 87 ILE 88 VAL 89 ILE 90 CYS 91 ASP 92 ARG 93 PHE 94 ILE 95 ASP 96 SER 97 THR 98 ILE 99 ALA 100 TYR 101 GLN 102 GLY 103 TYR 104 GLY 105 GLN 106 GLY 107 ILE 108 ASP 109 CYS 110 SER 111 LEU 112 ILE 113 ASP 114 GLN 115 LEU 116 ASN 117 ASP 118 LEU 119 VAL 120 ILE 121 ASP 122 VAL 123 TYR 124 PRO 125 ASP 126 ILE 127 THR 128 PHE 129 ILE 130 ILE 131 ASP 132 VAL 133 ASP 134 ASP 151 MET 152 GLU 153 PHE 154 TYR 155 TYR 156 ARG 157 VAL 158 ARG 159 ASP 160 GLY 161 PHE 162 TYR 163 ASP 164 ILE 165 ALA 166 LYS 167 LYS 168 ASN 169 PRO 170 HIS 171 ARG 172 CYS 173 HIS 174 VAL 175 ILE 176 THR 177 PHE 190 VAL 191 HIS 192 LEU 193 GLU 194 VAL 195 ILE 196 LYS 197 VAL 198 LEU 199 GLN 200
Unit 4	PRO -2 GLY -1 SER 0 MET 1 PHE 2 ILE 3 THR 4 PHE 5 GLU 6 GLY 7 ILE 8 ASP 9 GLY 10 SER 11 GLY 12 LYS 13 THR 14 THR 15 GLN 16 SER 17 HIS 18 LEU 19 LEU 20 ALA 21 GLU 22 TYR 23 LEU 24 SER 25 GLU 26 ILE 27 TYR 28 GLY 29 VAL 30 ASN 31 ASN 32 VAL 33 VAL 34 LEU 35 THR 36 ARG 37 GLU 38 PRO 39 GLY 40 GLY 41 THR 42 LEU 43 LEU 44 ASN 45 GLU 46 SER 47 VAL 48 ARG 49 ASN 50 LEU 51 LEU 52 PHE 53 LYS 54 ALA 55 GLN 56 GLY 57 LEU 58 ASP 59 SER 60 LEU 61 SER 62 GLU 63 LEU 64 LEU 65 PHE 66 PHE 67 ILE 68 ALA 69 MET 70 ARG 71 ARG 72 GLU 73 HIS 74 PHE 75 VAL 76 LYS 77 ILE 78 ILE 79 LYS 80 PRO 81 SER 82 LEU 83 MET 84 GLN 85 LYS 86 LYS 87 ILE 88 VAL 89 ILE 90 CYS 91 ASP 92 ARG 93 PHE 94 ILE 95 ASP 96 SER 97 THR 98 ILE 99 ALA 100 TYR 101 GLN 102 GLY 103 TYR 104 GLY 105 GLN 106 GLY 107 ILE 108 ASP 109 CYS 110 SER 111 LEU 112 ILE 113 ASP 114 GLN 115 LEU 116 ASN 117 ASP 118 LEU 119 VAL 120 ILE 121 ASP 122 VAL 123 TYR 124 PRO 125 ASP 126 ILE 127 THR 128 PHE 129 ILE 130 ILE 131 ASP 132 VAL 133 ASP 134 ASP 151 MET 152 GLU 153 PHE 154 TYR 155 TYR 156 ARG 157 VAL 158 ARG 159 ASP 160 GLY 161 PHE 162 TYR 163 ASP 164 ILE 165 ALA 166 LYS 167 LYS 168 ASN 169 PRO 170 HIS 171 ARG 172 CYS 173 HIS 174 VAL 175 ILE 176 THR 177 THR 182 TYR 183 ASP 184 ILE 185 ASP 186 ASP 187 ILE 188 ASN 189 PHE 190 VAL 191 HIS 192 LEU 193 GLU 194 VAL 195 ILE 196 LYS 197 VAL 198 LEU 199 GLN 200 MET 201

Ligands

Unit 5	SO4 300
Unit 6	SO4 300 EDO 301
Unit 7	SO4 300
Unit 8	SO4 300 EDO 301