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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF GTP-BOUND L129F MUTANT RAB7
Keywords PROTEIN - NUCLEOTIDE COMPLEX, PROTEIN MUTANT, CHARCOT-MARIE- DISEASE, CYTOPLASMIC VESICLE, DISEASE MUTATION, ENDOSOME, G BINDING, LIPOPROTEIN, LYSOSOME, METHYLATION, NEUROPATHY, NU BINDING, PHOSPHOPROTEIN, PRENYLATION, PROTEIN TRANSPORT, PR TRANSPORT
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3LAW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RAS-RELATED PROTEIN RAB-7A  A 177 1417 0
2  Protein   RAS-RELATED PROTEIN RAB-7A  B 175 1400 0
3  Protein   RAS-RELATED PROTEIN RAB-7A  C 177 1418 0
4  Protein   RAS-RELATED PROTEIN RAB-7A  D 176 1409 0
5  Protein   RAS-RELATED PROTEIN RAB-7A  E 175 1400 0
6  Ligand   RAS-RELATED PROTEIN RAB-7A  A 2 0 33
7  Ligand   RAS-RELATED PROTEIN RAB-7A  B 2 0 33
8  Ligand   RAS-RELATED PROTEIN RAB-7A  C 2 0 33
9  Ligand   RAS-RELATED PROTEIN RAB-7A  D 2 0 33
10  Ligand   RAS-RELATED PROTEIN RAB-7A  E 2 0 33
11 Water     42 0 42
total       932 7044 207

Proteins
Unit 1 LYS6 VAL7 LEU8 LEU9 LYS10 VAL11 ILE12 ILE13 LEU14 GLY15 ASP16 SER17 GLY18 VAL19 GLY20 LYS21 THR22 SER23 LEU24 MET25 ASN26 GLN27 TYR28 VAL29 ASN30 LYS31 LYS32 PHE33 SER34 ASN35 GLN36 TYR37 LYS38 ALA39 THR40 ILE41 GLY42 ALA43 ASP44 PHE45 LEU46 THR47 LYS48 GLU49 VAL50 MET51 VAL52 ASP53 ASP54 ARG55 LEU56 VAL57 THR58 MET59 GLN60 ILE61 TRP62 ASP63 THR64 ALA65 GLY66 GLN67 GLU68 ARG69 PHE70 GLN71 SER72 LEU73 GLY74 VAL75 ALA76 PHE77 TYR78 ARG79 GLY80 ALA81 ASP82 CYS83 CYS84 VAL85 LEU86 VAL87 PHE88 ASP89 VAL90 THR91 ALA92 PRO93 ASN94 THR95 PHE96 LYS97 THR98 LEU99 ASP100 SER101 TRP102 ARG103 ASP104 GLU105 PHE106 LEU107 ILE108 GLN109 ALA110 SER111 PRO112 ARG113 ASP114 PRO115 GLU116 ASN117 PHE118 PRO119 PHE120 VAL121 VAL122 LEU123 GLY124 ASN125 LYS126 ILE127 ASP128 PHE129 GLU130 ASN131 ARG132 GLN133 VAL134 ALA135 THR136 LYS137 ARG138 ALA139 GLN140 ALA141 TRP142 CYS143 TYR144 SER145 LYS146 ASN147 ASN148 ILE149 PRO150 TYR151 PHE152 GLU153 THR154 SER155 ALA156 LYS157 GLU158 ALA159 ILE160 ASN161 VAL162 GLU163 GLN164 ALA165 PHE166 GLN167 THR168 ILE169 ALA170 ARG171 ASN172 ALA173 LEU174 LYS175 GLN176 GLU177 THR178 GLU179 VAL180 GLU181 LEU182
Unit 2 LYS6 VAL7 LEU8 LEU9 LYS10 VAL11 ILE12 ILE13 LEU14 GLY15 ASP16 SER17 GLY18 VAL19 GLY20 LYS21 THR22 SER23 LEU24 MET25 ASN26 GLN27 TYR28 VAL29 ASN30 LYS31 LYS32 PHE33 SER34 ASN35 GLN36 TYR37 LYS38 ALA39 THR40 ILE41 GLY42 ALA43 ASP44 PHE45 LEU46 THR47 LYS48 GLU49 VAL50 MET51 VAL52 ASP53 ASP54 ARG55 LEU56 VAL57 THR58 MET59 GLN60 ILE61 TRP62 ASP63 THR64 ALA65 GLY66 GLN67 GLU68 ARG69 PHE70 GLN71 SER72 LEU73 GLY74 VAL75 ALA76 PHE77 TYR78 ARG79 GLY80 ALA81 ASP82 CYS83 CYS84 VAL85 LEU86 VAL87 PHE88 ASP89 VAL90 THR91 ALA92 PRO93 ASN94 THR95 PHE96 LYS97 THR98 LEU99 ASP100 SER101 TRP102 ARG103 ASP104 GLU105 PHE106 LEU107 ILE108 GLN109 ALA110 SER111 PRO112 ARG113 ASP114 PRO115 GLU116 ASN117 PHE118 PRO119 PHE120 VAL121 VAL122 LEU123 GLY124 ASN125 LYS126 ILE127 ASP128 PHE129 GLU130 ASN131 ARG132 GLN133 VAL134 ALA135 THR136 LYS137 ARG138 ALA139 GLN140 ALA141 TRP142 CYS143 TYR144 SER145 LYS146 ASN147 ASN148 ILE149 PRO150 TYR151 PHE152 GLU153 THR154 SER155 ALA156 LYS157 GLU158 ALA159 ILE160 ASN161 VAL162 GLU163 GLN164 ALA165 PHE166 GLN167 THR168 ILE169 ALA170 ARG171 ASN172 ALA173 LEU174 LYS175 GLN176 GLU177 THR178 GLU179 VAL180
Unit 3 LYS5 LYS6 VAL7 LEU8 LEU9 LYS10 VAL11 ILE12 ILE13 LEU14 GLY15 ASP16 SER17 GLY18 VAL19 GLY20 LYS21 THR22 SER23 LEU24 MET25 ASN26 GLN27 TYR28 VAL29 ASN30 LYS31 LYS32 PHE33 SER34 ASN35 GLN36 TYR37 LYS38 ALA39 THR40 ILE41 GLY42 ALA43 ASP44 PHE45 LEU46 THR47 LYS48 GLU49 VAL50 MET51 VAL52 ASP53 ASP54 ARG55 LEU56 VAL57 THR58 MET59 GLN60 ILE61 TRP62 ASP63 THR64 ALA65 GLY66 GLN67 GLU68 ARG69 PHE70 GLN71 SER72 LEU73 GLY74 VAL75 ALA76 PHE77 TYR78 ARG79 GLY80 ALA81 ASP82 CYS83 CYS84 VAL85 LEU86 VAL87 PHE88 ASP89 VAL90 THR91 ALA92 PRO93 ASN94 THR95 PHE96 LYS97 THR98 LEU99 ASP100 SER101 TRP102 ARG103 ASP104 GLU105 PHE106 LEU107 ILE108 GLN109 ALA110 SER111 PRO112 ARG113 ASP114 PRO115 GLU116 ASN117 PHE118 PRO119 PHE120 VAL121 VAL122 LEU123 GLY124 ASN125 LYS126 ILE127 ASP128 PHE129 GLU130 ASN131 ARG132 GLN133 VAL134 ALA135 THR136 LYS137 ARG138 ALA139 GLN140 ALA141 TRP142 CYS143 TYR144 SER145 LYS146 ASN147 ASN148 ILE149 PRO150 TYR151 PHE152 GLU153 THR154 SER155 ALA156 LYS157 GLU158 ALA159 ILE160 ASN161 VAL162 GLU163 GLN164 ALA165 PHE166 GLN167 THR168 ILE169 ALA170 ARG171 ASN172 ALA173 LEU174 LYS175 GLN176 GLU177 THR178 GLU179 VAL180 GLU181
Unit 4 LYS5 LYS6 VAL7 LEU8 LEU9 LYS10 VAL11 ILE12 ILE13 LEU14 GLY15 ASP16 SER17 GLY18 VAL19 GLY20 LYS21 THR22 SER23 LEU24 MET25 ASN26 GLN27 TYR28 VAL29 ASN30 LYS31 LYS32 PHE33 SER34 ASN35 GLN36 TYR37 LYS38 ALA39 THR40 ILE41 GLY42 ALA43 ASP44 PHE45 LEU46 THR47 LYS48 GLU49 VAL50 MET51 VAL52 ASP53 ASP54 ARG55 LEU56 VAL57 THR58 MET59 GLN60 ILE61 TRP62 ASP63 THR64 ALA65 GLY66 GLN67 GLU68 ARG69 PHE70 GLN71 SER72 LEU73 GLY74 VAL75 ALA76 PHE77 TYR78 ARG79 GLY80 ALA81 ASP82 CYS83 CYS84 VAL85 LEU86 VAL87 PHE88 ASP89 VAL90 THR91 ALA92 PRO93 ASN94 THR95 PHE96 LYS97 THR98 LEU99 ASP100 SER101 TRP102 ARG103 ASP104 GLU105 PHE106 LEU107 ILE108 GLN109 ALA110 SER111 PRO112 ARG113 ASP114 PRO115 GLU116 ASN117 PHE118 PRO119 PHE120 VAL121 VAL122 LEU123 GLY124 ASN125 LYS126 ILE127 ASP128 PHE129 GLU130 ASN131 ARG132 GLN133 VAL134 ALA135 THR136 LYS137 ARG138 ALA139 GLN140 ALA141 TRP142 CYS143 TYR144 SER145 LYS146 ASN147 ASN148 ILE149 PRO150 TYR151 PHE152 GLU153 THR154 SER155 ALA156 LYS157 GLU158 ALA159 ILE160 ASN161 VAL162 GLU163 GLN164 ALA165 PHE166 GLN167 THR168 ILE169 ALA170 ARG171 ASN172 ALA173 LEU174 LYS175 GLN176 GLU177 THR178 GLU179 VAL180
Unit 5 LYS6 VAL7 LEU8 LEU9 LYS10 VAL11 ILE12 ILE13 LEU14 GLY15 ASP16 SER17 GLY18 VAL19 GLY20 LYS21 THR22 SER23 LEU24 MET25 ASN26 GLN27 TYR28 VAL29 ASN30 LYS31 LYS32 PHE33 SER34 ASN35 GLN36 TYR37 LYS38 ALA39 THR40 ILE41 GLY42 ALA43 ASP44 PHE45 LEU46 THR47 LYS48 GLU49 VAL50 MET51 VAL52 ASP53 ASP54 ARG55 LEU56 VAL57 THR58 MET59 GLN60 ILE61 TRP62 ASP63 THR64 ALA65 GLY66 GLN67 GLU68 ARG69 PHE70 GLN71 SER72 LEU73 GLY74 VAL75 ALA76 PHE77 TYR78 ARG79 GLY80 ALA81 ASP82 CYS83 CYS84 VAL85 LEU86 VAL87 PHE88 ASP89 VAL90 THR91 ALA92 PRO93 ASN94 THR95 PHE96 LYS97 THR98 LEU99 ASP100 SER101 TRP102 ARG103 ASP104 GLU105 PHE106 LEU107 ILE108 GLN109 ALA110 SER111 PRO112 ARG113 ASP114 PRO115 GLU116 ASN117 PHE118 PRO119 PHE120 VAL121 VAL122 LEU123 GLY124 ASN125 LYS126 ILE127 ASP128 PHE129 GLU130 ASN131 ARG132 GLN133 VAL134 ALA135 THR136 LYS137 ARG138 ALA139 GLN140 ALA141 TRP142 CYS143 TYR144 SER145 LYS146 ASN147 ASN148 ILE149 PRO150 TYR151 PHE152 GLU153 THR154 SER155 ALA156 LYS157 GLU158 ALA159 ILE160 ASN161 VAL162 GLU163 GLN164 ALA165 PHE166 GLN167 THR168 ILE169 ALA170 ARG171 ASN172 ALA173 LEU174 LYS175 GLN176 GLU177 THR178 GLU179 VAL180

Ligands
Unit 6 GNP1400 MG1401
Unit 7 GNP1400 MG1401
Unit 8 GNP1400 MG1401
Unit 9 GNP1400 MG1401
Unit 10 GNP1400 MG1401

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany