3L95 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE HUMAN NOTCH1 NEGATIVE REGULATORY RE BOUND TO THE FAB FRAGMENT OF AN ANTAGONIST ANTIBODY
• Keywords: NRR, FAB FRAGMENT, ANTIBODY, ALPHA-BETA-SANDWICH, SEA DOMAIN LIN12 NOTCH CYSTEINE-RICH, HD DOMAIN, CELL CYCLE, SIGNALING ACTIVATOR, ANK REPEAT, CELL MEMBRANE, DEVELOPMENTAL PROTEIN DIFFERENTIATION, EGF-LIKE DOMAIN, GLYCOPROTEIN, MEMBRANE, M BINDING, NOTCH SIGNALING PATHWAY, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3L95	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ANTI-NRR1 FAB FRAGMENT LIGHT CHAIN	A	212	1625	0
2	Protein	ANTI-NRR1 FAB FRAGMENT HEAVY CHAIN	B	220	1648	0
3	Protein	NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1	X	230	1776	0
4	Protein	ANTI-NRR1 FAB FRAGMENT LIGHT CHAIN	L	212	1625	0
5	Protein	ANTI-NRR1 FAB FRAGMENT HEAVY CHAIN	H	219	1643	0
6	Protein	NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1	Y	215	1669	0
7	Ligand		C	2	0	28
8	Ligand	ANTI-NRR1 FAB FRAGMENT HEAVY CHAIN	B	1	0	5
9	Ligand	NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1	X	3	0	3
10	Ligand	NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1	Y	3	0	3
11	Water			81	0	81
total				1398	9986	120

Proteins

Unit 1	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 SER 30 THR 31 ALA 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 SER 52 PHE 53 LEU 54 TYR 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 PHE 91 TYR 92 THR 93 THR 94 PRO 95 SER 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 TRP 33 ILE 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ARG 50 ILE 51 ASN 52 PRO 53 PRO 54 ASN 55 ARG 55A SER 56 ASN 57 GLN 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 GLY 95 SER 96 GLY 97 PHE 98 ARG 99 TRP 100 VAL 100J MET 100K ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 LYS 129 SER 130 THR 131 SER 132 GLY 133 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214
Unit 3	GLY 1447 SER 1448 ALA 1449 CYS 1450 GLU 1451 LEU 1452 PRO 1453 GLU 1454 CYS 1455 GLN 1456 GLU 1457 ASP 1458 ALA 1459 GLY 1460 ASN 1461 LYS 1462 VAL 1463 CYS 1464 SER 1465 LEU 1466 GLN 1467 CYS 1468 ASN 1469 ASN 1470 HIS 1471 ALA 1472 CYS 1473 GLY 1474 TRP 1475 ASP 1476 GLY 1477 GLY 1478 ASP 1479 CYS 1480 SER 1481 LEU 1482 ASN 1483 PHE 1484 ASN 1485 ASP 1486 PRO 1487 TRP 1488 LYS 1489 ASN 1490 CYS 1491 THR 1492 GLN 1493 SER 1494 LEU 1495 GLN 1496 CYS 1497 TRP 1498 LYS 1499 TYR 1500 PHE 1501 SER 1502 ASP 1503 GLY 1504 HIS 1505 CYS 1506 ASP 1507 SER 1508 GLN 1509 CYS 1510 ASN 1511 SER 1512 ALA 1513 GLY 1514 CYS 1515 LEU 1516 PHE 1517 ASP 1518 GLY 1519 PHE 1520 ASP 1521 CYS 1522 GLN 1523 ARG 1524 ALA 1525 GLU 1526 GLY 1527 GLN 1528 CYS 1529 ASN 1530 PRO 1531 LEU 1532 TYR 1533 ASP 1534 GLN 1535 TYR 1536 CYS 1537 LYS 1538 ASP 1539 HIS 1540 PHE 1541 SER 1542 ASP 1543 GLY 1544 HIS 1545 CYS 1546 ASP 1547 GLN 1548 GLY 1549 CYS 1550 ASN 1551 SER 1552 ALA 1553 GLU 1554 CYS 1555 GLU 1556 TRP 1557 ASP 1558 GLY 1559 LEU 1560 ASP 1561 CYS 1562 ALA 1563 GLU 1564 HIS 1565 VAL 1566 PRO 1567 GLU 1568 ARG 1569 LEU 1570 ALA 1571 ALA 1572 GLY 1573 THR 1574 LEU 1575 VAL 1576 VAL 1577 VAL 1578 VAL 1579 LEU 1580 MET 1581 PRO 1582 PRO 1583 GLU 1584 GLN 1585 LEU 1586 ARG 1587 ASN 1588 SER 1589 SER 1590 PHE 1591 HIS 1592 PHE 1593 LEU 1594 ARG 1595 GLU 1596 LEU 1597 SER 1598 ARG 1599 VAL 1600 LEU 1601 HIS 1602 THR 1603 ASN 1604 VAL 1605 VAL 1606 PHE 1607 LYS 1608 ARG 1609 ASP 1610 ALA 1611 HIS 1612 GLY 1613 GLN 1614 GLN 1615 MET 1616 ILE 1617 PHE 1618 PRO 1619 TYR 1620 TYR 1621 GLY 1622 ASP 1671 VAL 1672 ARG 1673 GLY 1674 SER 1675 ILE 1676 VAL 1677 TYR 1678 LEU 1679 GLU 1680 ILE 1681 ASP 1682 ASN 1683 ARG 1684 GLN 1685 CYS 1686 VAL 1687 SER 1691 GLN 1692 CYS 1693 PHE 1694 GLN 1695 SER 1696 ALA 1697 THR 1698 ASP 1699 VAL 1700 ALA 1701 ALA 1702 PHE 1703 LEU 1704 GLY 1705 ALA 1706 LEU 1707 ALA 1708 SER 1709 LEU 1710 GLY 1711 SER 1712 LEU 1713 ASN 1714 ILE 1715 PRO 1716 TYR 1717 LYS 1718 ILE 1719 GLU 1720 ALA 1721 VAL 1722 GLN 1723 SER 1724 GLU 1725 THR 1726 VAL 1727
Unit 4	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 SER 30 THR 31 ALA 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 SER 52 PHE 53 LEU 54 TYR 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 PHE 91 TYR 92 THR 93 THR 94 PRO 95 SER 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212
Unit 5	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 TRP 33 ILE 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ARG 50 ILE 51 ASN 52 PRO 53 PRO 54 ASN 55 ARG 55A SER 56 ASN 57 GLN 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 GLY 95 SER 96 GLY 97 PHE 98 ARG 99 TRP 100 VAL 100J MET 100K ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 LYS 129 SER 130 THR 131 SER 132 GLY 133 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213
Unit 6	ASN 1461 LYS 1462 VAL 1463 CYS 1464 SER 1465 LEU 1466 GLN 1467 CYS 1468 ASN 1469 ASN 1470 HIS 1471 ALA 1472 CYS 1473 GLY 1474 TRP 1475 ASP 1476 GLY 1477 GLY 1478 ASP 1479 CYS 1480 SER 1481 LEU 1482 ASN 1483 PHE 1484 ASN 1485 ASP 1486 PRO 1487 TRP 1488 LYS 1489 ASN 1490 CYS 1491 THR 1492 GLN 1493 SER 1494 LEU 1495 GLN 1496 CYS 1497 TRP 1498 LYS 1499 TYR 1500 PHE 1501 SER 1502 ASP 1503 GLY 1504 HIS 1505 CYS 1506 ASP 1507 SER 1508 GLN 1509 CYS 1510 ASN 1511 SER 1512 ALA 1513 GLY 1514 CYS 1515 LEU 1516 PHE 1517 ASP 1518 GLY 1519 PHE 1520 ASP 1521 CYS 1522 GLN 1523 GLY 1527 GLN 1528 CYS 1529 ASN 1530 PRO 1531 LEU 1532 TYR 1533 ASP 1534 GLN 1535 TYR 1536 CYS 1537 LYS 1538 ASP 1539 HIS 1540 PHE 1541 SER 1542 ASP 1543 GLY 1544 HIS 1545 CYS 1546 ASP 1547 GLN 1548 GLY 1549 CYS 1550 ASN 1551 SER 1552 ALA 1553 GLU 1554 CYS 1555 GLU 1556 TRP 1557 ASP 1558 GLY 1559 LEU 1560 ASP 1561 CYS 1562 ALA 1563 GLU 1564 HIS 1565 VAL 1566 PRO 1567 GLU 1568 ARG 1569 LEU 1570 ALA 1571 ALA 1572 GLY 1573 THR 1574 LEU 1575 VAL 1576 VAL 1577 VAL 1578 VAL 1579 LEU 1580 MET 1581 PRO 1582 PRO 1583 GLU 1584 GLN 1585 LEU 1586 ARG 1587 ASN 1588 SER 1589 SER 1590 PHE 1591 HIS 1592 PHE 1593 LEU 1594 ARG 1595 GLU 1596 LEU 1597 SER 1598 ARG 1599 VAL 1600 LEU 1601 HIS 1602 THR 1603 ASN 1604 VAL 1605 VAL 1606 PHE 1607 LYS 1608 ARG 1609 ASP 1610 ALA 1611 HIS 1612 GLY 1613 GLN 1614 GLN 1615 MET 1616 ILE 1617 PHE 1618 PRO 1619 TYR 1620 TYR 1621 GLY 1622 ASP 1671 VAL 1672 ARG 1673 GLY 1674 SER 1675 ILE 1676 VAL 1677 TYR 1678 LEU 1679 GLU 1680 ILE 1681 ASP 1682 ASN 1683 ARG 1684 GLN 1685 CYS 1686 VAL 1687 GLN 1688 ALA 1689 SER 1690 SER 1691 GLN 1692 CYS 1693 PHE 1694 GLN 1695 SER 1696 ALA 1697 THR 1698 ASP 1699 VAL 1700 ALA 1701 ALA 1702 PHE 1703 LEU 1704 GLY 1705 ALA 1706 LEU 1707 ALA 1708 SER 1709 LEU 1710 GLY 1711 SER 1712 LEU 1713 ASN 1714 ILE 1715 PRO 1716 TYR 1717 LYS 1718 ILE 1719 GLU 1720 ALA 1721 VAL 1722 GLN 1723 SER 1724 GLU 1725 THR 1726

Ligands

Unit 7	NAG 1 NAG 2
Unit 8	SO4 222
Unit 9	CA 2001 CA 2002 CA 2003
Unit 10	CA 2001 CA 2002 CA 2003