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Title | CRYSTAL STRUCTURE OF THE HUMAN NOTCH1 NEGATIVE REGULATORY RE BOUND TO THE FAB FRAGMENT OF AN ANTAGONIST ANTIBODY | |
Keywords | NRR, FAB FRAGMENT, ANTIBODY, ALPHA-BETA-SANDWICH, SEA DOMAIN LIN12 NOTCH CYSTEINE-RICH, HD DOMAIN, CELL CYCLE, SIGNALING ACTIVATOR, ANK REPEAT, CELL MEMBRANE, DEVELOPMENTAL PROTEIN DIFFERENTIATION, EGF-LIKE DOMAIN, GLYCOPROTEIN, MEMBRANE, M BINDING, NOTCH SIGNALING PATHWAY, IMMUNE SYSTEM | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3L95 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | ANTI-NRR1 FAB FRAGMENT LIGHT CHAIN | A | 212 | 1625 | 0 |
2 | Protein | ANTI-NRR1 FAB FRAGMENT HEAVY CHAIN | B | 220 | 1648 | 0 |
3 | Protein | NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1 | X | 230 | 1776 | 0 |
4 | Protein | ANTI-NRR1 FAB FRAGMENT LIGHT CHAIN | L | 212 | 1625 | 0 |
5 | Protein | ANTI-NRR1 FAB FRAGMENT HEAVY CHAIN | H | 219 | 1643 | 0 |
6 | Protein | NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1 | Y | 215 | 1669 | 0 |
7 | Ligand | C | 2 | 0 | 28 | |
8 | Ligand | ANTI-NRR1 FAB FRAGMENT HEAVY CHAIN | B | 1 | 0 | 5 |
9 | Ligand | NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1 | X | 3 | 0 | 3 |
10 | Ligand | NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1 | Y | 3 | 0 | 3 |
11 | Water | 81 | 0 | 81 | ||
total | 1398 | 9986 | 120 |
Unit 1 | ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 VAL29 SER30 THR31 ALA32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 ALA51 SER52 PHE53 LEU54 TYR55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 PHE91 TYR92 THR93 THR94 PRO95 SER96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 |
Unit 2 | GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 TYR32 TRP33 ILE34 HIS35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 ARG50 ILE51 ASN52 PRO53 PRO54 ASN55 ARG55A SER56 ASN57 GLN58 TYR59 ALA60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ALA71 ASP72 THR73 SER74 LYS75 ASN76 THR77 ALA78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C ARG83 ALA84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 GLY95 SER96 GLY97 PHE98 ARG99 TRP100 VAL100J MET100K ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214 |
Unit 3 | GLY1447 SER1448 ALA1449 CYS1450 GLU1451 LEU1452 PRO1453 GLU1454 CYS1455 GLN1456 GLU1457 ASP1458 ALA1459 GLY1460 ASN1461 LYS1462 VAL1463 CYS1464 SER1465 LEU1466 GLN1467 CYS1468 ASN1469 ASN1470 HIS1471 ALA1472 CYS1473 GLY1474 TRP1475 ASP1476 GLY1477 GLY1478 ASP1479 CYS1480 SER1481 LEU1482 ASN1483 PHE1484 ASN1485 ASP1486 PRO1487 TRP1488 LYS1489 ASN1490 CYS1491 THR1492 GLN1493 SER1494 LEU1495 GLN1496 CYS1497 TRP1498 LYS1499 TYR1500 PHE1501 SER1502 ASP1503 GLY1504 HIS1505 CYS1506 ASP1507 SER1508 GLN1509 CYS1510 ASN1511 SER1512 ALA1513 GLY1514 CYS1515 LEU1516 PHE1517 ASP1518 GLY1519 PHE1520 ASP1521 CYS1522 GLN1523 ARG1524 ALA1525 GLU1526 GLY1527 GLN1528 CYS1529 ASN1530 PRO1531 LEU1532 TYR1533 ASP1534 GLN1535 TYR1536 CYS1537 LYS1538 ASP1539 HIS1540 PHE1541 SER1542 ASP1543 GLY1544 HIS1545 CYS1546 ASP1547 GLN1548 GLY1549 CYS1550 ASN1551 SER1552 ALA1553 GLU1554 CYS1555 GLU1556 TRP1557 ASP1558 GLY1559 LEU1560 ASP1561 CYS1562 ALA1563 GLU1564 HIS1565 VAL1566 PRO1567 GLU1568 ARG1569 LEU1570 ALA1571 ALA1572 GLY1573 THR1574 LEU1575 VAL1576 VAL1577 VAL1578 VAL1579 LEU1580 MET1581 PRO1582 PRO1583 GLU1584 GLN1585 LEU1586 ARG1587 ASN1588 SER1589 SER1590 PHE1591 HIS1592 PHE1593 LEU1594 ARG1595 GLU1596 LEU1597 SER1598 ARG1599 VAL1600 LEU1601 HIS1602 THR1603 ASN1604 VAL1605 VAL1606 PHE1607 LYS1608 ARG1609 ASP1610 ALA1611 HIS1612 GLY1613 GLN1614 GLN1615 MET1616 ILE1617 PHE1618 PRO1619 TYR1620 TYR1621 GLY1622 ASP1671 VAL1672 ARG1673 GLY1674 SER1675 ILE1676 VAL1677 TYR1678 LEU1679 GLU1680 ILE1681 ASP1682 ASN1683 ARG1684 GLN1685 CYS1686 VAL1687 SER1691 GLN1692 CYS1693 PHE1694 GLN1695 SER1696 ALA1697 THR1698 ASP1699 VAL1700 ALA1701 ALA1702 PHE1703 LEU1704 GLY1705 ALA1706 LEU1707 ALA1708 SER1709 LEU1710 GLY1711 SER1712 LEU1713 ASN1714 ILE1715 PRO1716 TYR1717 LYS1718 ILE1719 GLU1720 ALA1721 VAL1722 GLN1723 SER1724 GLU1725 THR1726 VAL1727 |
Unit 4 | ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 VAL29 SER30 THR31 ALA32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 ALA51 SER52 PHE53 LEU54 TYR55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 PHE91 TYR92 THR93 THR94 PRO95 SER96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 |
Unit 5 | GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 TYR32 TRP33 ILE34 HIS35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 ARG50 ILE51 ASN52 PRO53 PRO54 ASN55 ARG55A SER56 ASN57 GLN58 TYR59 ALA60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ALA71 ASP72 THR73 SER74 LYS75 ASN76 THR77 ALA78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C ARG83 ALA84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 GLY95 SER96 GLY97 PHE98 ARG99 TRP100 VAL100J MET100K ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 |
Unit 6 | ASN1461 LYS1462 VAL1463 CYS1464 SER1465 LEU1466 GLN1467 CYS1468 ASN1469 ASN1470 HIS1471 ALA1472 CYS1473 GLY1474 TRP1475 ASP1476 GLY1477 GLY1478 ASP1479 CYS1480 SER1481 LEU1482 ASN1483 PHE1484 ASN1485 ASP1486 PRO1487 TRP1488 LYS1489 ASN1490 CYS1491 THR1492 GLN1493 SER1494 LEU1495 GLN1496 CYS1497 TRP1498 LYS1499 TYR1500 PHE1501 SER1502 ASP1503 GLY1504 HIS1505 CYS1506 ASP1507 SER1508 GLN1509 CYS1510 ASN1511 SER1512 ALA1513 GLY1514 CYS1515 LEU1516 PHE1517 ASP1518 GLY1519 PHE1520 ASP1521 CYS1522 GLN1523 GLY1527 GLN1528 CYS1529 ASN1530 PRO1531 LEU1532 TYR1533 ASP1534 GLN1535 TYR1536 CYS1537 LYS1538 ASP1539 HIS1540 PHE1541 SER1542 ASP1543 GLY1544 HIS1545 CYS1546 ASP1547 GLN1548 GLY1549 CYS1550 ASN1551 SER1552 ALA1553 GLU1554 CYS1555 GLU1556 TRP1557 ASP1558 GLY1559 LEU1560 ASP1561 CYS1562 ALA1563 GLU1564 HIS1565 VAL1566 PRO1567 GLU1568 ARG1569 LEU1570 ALA1571 ALA1572 GLY1573 THR1574 LEU1575 VAL1576 VAL1577 VAL1578 VAL1579 LEU1580 MET1581 PRO1582 PRO1583 GLU1584 GLN1585 LEU1586 ARG1587 ASN1588 SER1589 SER1590 PHE1591 HIS1592 PHE1593 LEU1594 ARG1595 GLU1596 LEU1597 SER1598 ARG1599 VAL1600 LEU1601 HIS1602 THR1603 ASN1604 VAL1605 VAL1606 PHE1607 LYS1608 ARG1609 ASP1610 ALA1611 HIS1612 GLY1613 GLN1614 GLN1615 MET1616 ILE1617 PHE1618 PRO1619 TYR1620 TYR1621 GLY1622 ASP1671 VAL1672 ARG1673 GLY1674 SER1675 ILE1676 VAL1677 TYR1678 LEU1679 GLU1680 ILE1681 ASP1682 ASN1683 ARG1684 GLN1685 CYS1686 VAL1687 GLN1688 ALA1689 SER1690 SER1691 GLN1692 CYS1693 PHE1694 GLN1695 SER1696 ALA1697 THR1698 ASP1699 VAL1700 ALA1701 ALA1702 PHE1703 LEU1704 GLY1705 ALA1706 LEU1707 ALA1708 SER1709 LEU1710 GLY1711 SER1712 LEU1713 ASN1714 ILE1715 PRO1716 TYR1717 LYS1718 ILE1719 GLU1720 ALA1721 VAL1722 GLN1723 SER1724 GLU1725 THR1726 |
Unit 7 | NAG1 NAG2 |
Unit 8 | SO4222 |
Unit 9 | CA2001 CA2002 CA2003 |
Unit 10 | CA2001 CA2002 CA2003 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |