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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE SRP19/S-DOMAIN SRP RNA COMPLEX OF S SOLFATARICUS
Keywords RIBONUCLEOPROTEIN COMPLEX, RNA-RNA TERTIARY INTERACTIONS, AS LOOP, 7S RNA, SIGNAL RECOGNITION PARTICLE, STRUCTURAL RNA, BINDING, RNA-RNA BINDING PROTEIN COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3KTW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN  A 92 766 0
2  Protein   SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN  B 93 771 0
3  RNA    C 96 2063 0
4  RNA    D 95 2043 0
5  Ligand   SRP RNA  D 1 0 1
6  Ligand   SRP RNA  C 2 0 2
7  Ligand   SRP RNA  D 1 0 1
8  Ligand   SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN  B 1 0 1
9  Ligand   SRP RNA  C 1 0 1
10  Ligand   SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN  A 1 0 1
11  Ligand   SRP RNA  C 1 0 1
12  Ligand   SRP RNA  D 1 0 1
13  Ligand   SRP RNA  C 1 0 1
total       386 5643 10
Proteins
Unit 1 SER2 LEU3 ARG4 ASP5 LEU6 LYS7 GLU8 GLU9 ASN10 ARG11 ILE12 VAL13 ILE14 TRP15 PRO16 SER17 TYR18 PHE19 PHE20 SER21 PRO22 THR23 ARG24 SER25 LYS26 GLY27 ARG28 ARG29 LEU30 ALA31 ARG32 ILE33 PRO34 TYR35 LYS36 ILE37 LYS38 THR39 GLU40 GLU41 LEU42 VAL43 SER44 THR45 LEU46 ARG47 GLU48 LEU49 GLY50 LEU51 ASP52 PRO53 ILE54 VAL55 ILE56 GLU57 ASN58 LYS59 LYS60 TYR61 PRO62 ARG63 ASP64 ARG65 LYS66 ILE67 ASN68 PHE69 LEU70 ILE71 ALA72 VAL73 LYS74 LYS75 VAL76 LYS77 SER78 LYS79 ASN80 TYR81 THR82 LEU83 LYS84 ILE85 ILE86 HIS87 ASN88 ALA89 LEU90 MET91 GLY92 THR93
Unit 2 SER2 LEU3 ARG4 ASP5 LEU6 LYS7 GLU8 GLU9 ASN10 ARG11 ILE12 VAL13 ILE14 TRP15 PRO16 SER17 TYR18 PHE19 PHE20 SER21 PRO22 THR23 ARG24 SER25 LYS26 GLY27 ARG28 ARG29 LEU30 ALA31 ARG32 ILE33 PRO34 TYR35 LYS36 ILE37 LYS38 THR39 GLU40 GLU41 LEU42 VAL43 SER44 THR45 LEU46 ARG47 GLU48 LEU49 GLY50 LEU51 ASP52 PRO53 ILE54 VAL55 ILE56 GLU57 ASN58 LYS59 LYS60 TYR61 PRO62 ARG63 ASP64 ARG65 LYS66 ILE67 ASN68 PHE69 LEU70 ILE71 ALA72 VAL73 LYS74 LYS75 VAL76 LYS77 SER78 LYS79 ASN80 TYR81 THR82 LEU83 LYS84 ILE85 ILE86 HIS87 ASN88 ALA89 LEU90 MET91 GLY92 THR93 ARG94
Nucleic acids
Unit 3 A141 G142 A143 U144 A145 G146 U147 C148 G149 U150 G151 G152 G153 U154 U155 C156 C157 C158 U159 U160 U161 C162 U163 G164 G165 A166 G167 G168 G169 A170 G171 A172 G173 G174 G175 A176 A177 U178 U179 C180 C181 A182 C183 G184 U185 U186 G187 A188 C189 C190 G191 G192 G193 G194 G195 A196 A197 C198 C199 G200 G201 C202 C203 A204 G205 G206 C207 C208 C209 G210 G211 A212 A213 G214 G215 G216 A217 G218 C219 A220 A221 C222 C223 G224 U225 G226 C227 C228 C229 G230 G231 C232 U233 A234 U235 C236
Unit 4 A141 G142 A143 U144 A145 G146 U147 C148 G149 U150 G151 G152 G153 U154 U155 C156 C157 C158 U159 U160 U161 C162 U163 G164 G165 A166 G167 G168 G169 A170 G171 A172 G173 G174 G175 A176 A177 U178 U179 C180 C181 A182 C183 G184 U185 U186 G187 A188 C189 C190 G191 G192 G193 G194 G195 A196 A197 C198 C199 G200 G201 C202 C203 A204 G205 G206 C207 C208 C209 G210 G211 A212 A213 G214 G215 G216 A217 G218 C219 A220 A221 C222 C223 G224 U225 G226 C227 C228 C229 G230 G231 C232 U233 A234 U235
Ligands
Unit 5 K1
Unit 6 K2 K3
Unit 7 K4
Unit 8 MG103
Unit 9 MG6
Unit 10 MG103
Unit 11 MG8
Unit 12 MG9
Unit 13 MG10
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany