3KTM - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE HEPARIN-INDUCED E1-DIMER OF THE AMYLOID PRE PROTEIN (APP)
• Keywords: PROTEIN STRUCTURE, ALZHEIMER DISEASE, AMYLOID, AMYLOIDOSIS, APOPTOSIS, CELL ADHESION, COPPER, DISEASE MUTATION, DISULFI ENDOCYTOSIS, HEPARIN-BINDING, METAL-BINDING, NEURODEGENERAT NOTCH SIGNALING PATHWAY, PROTEOGLYCAN, ZINC, SIGNALING PROT
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KTM	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	AMYLOID BETA A4 PROTEIN	A	175	1392	0
2	Protein	AMYLOID BETA A4 PROTEIN	B	173	1369	0
3	Protein	AMYLOID BETA A4 PROTEIN	C	174	1374	0
4	Protein	AMYLOID BETA A4 PROTEIN	D	173	1373	0
5	Protein	AMYLOID BETA A4 PROTEIN	E	177	1401	0
6	Protein	AMYLOID BETA A4 PROTEIN	F	175	1392	0
7	Protein	AMYLOID BETA A4 PROTEIN	G	174	1382	0
8	Protein	AMYLOID BETA A4 PROTEIN	H	175	1382	0
9	Ligand	AMYLOID BETA A4 PROTEIN	A	1	0	6
10	Ligand	AMYLOID BETA A4 PROTEIN	B	3	0	15
11	Ligand	AMYLOID BETA A4 PROTEIN	C	3	0	15
12	Ligand	AMYLOID BETA A4 PROTEIN	D	2	0	11
13	Ligand	AMYLOID BETA A4 PROTEIN	E	3	0	15
14	Ligand	AMYLOID BETA A4 PROTEIN	F	1	0	6
15	Ligand	AMYLOID BETA A4 PROTEIN	G	1	0	6
16	Ligand	AMYLOID BETA A4 PROTEIN	H	3	0	15
17	Water			282	0	282
total				1695	11065	371

Proteins

Unit 1	LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198 ALA 199 LEU 200 GLU 201 HIS 202
Unit 2	ALA 26 GLY 27 LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198
Unit 3	ALA 26 GLY 27 LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198 ALA 199
Unit 4	LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198 ALA 199 LEU 200
Unit 5	ALA 26 GLY 27 LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198 ALA 199 LEU 200 GLU 201 HIS 202
Unit 6	LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198 ALA 199 LEU 200 GLU 201 HIS 202
Unit 7	LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198 ALA 199 LEU 200 GLU 201
Unit 8	ALA 26 GLY 27 LEU 28 LEU 29 ALA 30 GLU 31 PRO 32 GLN 33 ILE 34 ALA 35 MET 36 PHE 37 CYS 38 GLY 39 ARG 40 LEU 41 ASN 42 MET 43 HIS 44 MET 45 ASN 46 VAL 47 GLN 48 ASN 49 GLY 50 LYS 51 TRP 52 ASP 53 SER 54 ASP 55 PRO 56 SER 57 GLY 58 THR 59 LYS 60 THR 61 CYS 62 ILE 63 ASP 64 THR 65 LYS 66 GLU 67 GLY 68 ILE 69 LEU 70 GLN 71 TYR 72 CYS 73 GLN 74 GLU 75 VAL 76 TYR 77 PRO 78 GLU 79 LEU 80 GLN 81 ILE 82 THR 83 ASN 84 VAL 85 VAL 86 GLU 87 ALA 88 ASN 89 GLN 90 PRO 91 VAL 92 THR 93 ILE 94 GLN 95 ASN 96 TRP 97 CYS 98 LYS 99 ARG 100 GLY 101 ARG 102 LYS 103 GLN 104 CYS 105 LYS 106 THR 107 HIS 108 PRO 109 HIS 110 PHE 111 VAL 112 ILE 113 PRO 114 TYR 115 ARG 116 CYS 117 LEU 118 VAL 119 GLY 120 GLU 121 PHE 122 VAL 123 SER 124 ASP 125 ALA 126 LEU 127 LEU 128 VAL 129 PRO 130 ASP 131 LYS 132 CYS 133 LYS 134 PHE 135 LEU 136 HIS 137 GLN 138 GLU 139 ARG 140 MET 141 ASP 142 VAL 143 CYS 144 GLU 145 THR 146 HIS 147 LEU 148 HIS 149 TRP 150 HIS 151 THR 152 VAL 153 ALA 154 LYS 155 GLU 156 THR 157 CYS 158 SER 159 GLU 160 LYS 161 SER 162 THR 163 ASN 164 LEU 165 HIS 166 ASP 167 TYR 168 GLY 169 MET 170 LEU 171 LEU 172 PRO 173 CYS 174 GLY 175 ILE 176 ASP 177 LYS 178 PHE 179 ARG 180 GLY 181 VAL 182 GLU 183 PHE 184 VAL 185 CYS 186 CYS 187 PRO 188 LEU 189 ALA 190 ILE 191 GLU 192 GLY 193 ARG 194 LYS 195 LEU 196 ALA 197 ALA 198 ALA 199 LEU 200

Ligands

Unit 9	BU4 1
Unit 10	SO4 2 BU4 7 ACT 208
Unit 11	SO4 3 BU4 5 ACT 8
Unit 12	BU4 2 SO4 5
Unit 13	SO4 4 BU4 6 ACT 9
Unit 14	BU4 4
Unit 15	BU4 3
Unit 16	SO4 1 ACT 6 BU4 8