3KTD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A PUTATIVE PREPHENATE DEHYDROGENASE (CG FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 AT 2.60 A RESOLU
• Keywords: PREPHENATE DEHYDROGENAS, STRUCTURAL GENOMICS, JOINT CENTER F STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PS OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KTD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PREPHENATE DEHYDROGENASE	A	323	2346	48
2	Protein	PREPHENATE DEHYDROGENASE	B	319	2283	48
3	Protein	PREPHENATE DEHYDROGENASE	C	318	2298	48
4	Protein	PREPHENATE DEHYDROGENASE	D	321	2324	48
5	Ligand	PREPHENATE DEHYDROGENASE	A	2	0	11
6	Water			92	0	92
total				1375	9251	295

Proteins

Unit 1	ASP 5 ILE 6 SER 7 ARG 8 PRO 9 VAL 10 CYS 11 ILE 12 LEU 13 GLY 14 LEU 15 GLY 16 LEU 17 ILE 18 GLY 19 GLY 20 SER 21 LEU 22 LEU 23 ARG 24 ASP 25 LEU 26 HIS 27 ALA 28 ALA 29 ASN 30 HIS 31 SER 32 VAL 33 PHE 34 GLY 35 TYR 36 ASN 37 ARG 38 SER 39 ARG 40 SER 41 GLY 42 ALA 43 LYS 44 SER 45 ALA 46 VAL 47 ASP 48 GLU 49 GLY 50 PHE 51 ASP 52 VAL 53 SER 54 ALA 55 ASP 56 LEU 57 GLU 58 ALA 59 THR 60 LEU 61 GLN 62 ARG 63 ALA 64 ALA 65 ALA 66 GLU 67 ASP 68 ALA 69 LEU 70 ILE 71 VAL 72 LEU 73 ALA 74 VAL 75 PRO 76 MSE 77 THR 78 ALA 79 ILE 80 ASP 81 SER 82 LEU 83 LEU 84 ASP 85 ALA 86 VAL 87 HIS 88 THR 89 HIS 90 ALA 91 PRO 92 ASN 93 ASN 94 GLY 95 PHE 96 THR 97 ASP 98 VAL 99 VAL 100 SER 101 VAL 102 LYS 103 THR 104 ALA 105 VAL 106 TYR 107 ASP 108 ALA 109 VAL 110 LYS 111 ALA 112 ARG 113 ASN 114 MSE 115 GLN 116 HIS 117 ARG 118 TYR 119 VAL 120 GLY 121 SER 122 HIS 123 PRO 124 MSE 125 ALA 126 GLY 127 THR 128 ALA 129 SER 131 GLY 132 TRP 133 SER 134 ALA 135 SER 136 MSE 137 ASP 138 GLY 139 LEU 140 PHE 141 LYS 142 ARG 143 ALA 144 VAL 145 TRP 146 VAL 147 VAL 148 THR 149 PHE 150 ASP 151 GLN 152 LEU 153 PHE 154 ASP 155 GLY 156 THR 157 ASP 158 ILE 159 ASN 160 SER 161 THR 162 TRP 163 ILE 164 SER 165 ILE 166 TRP 167 LYS 168 ASP 169 VAL 170 VAL 171 GLN 172 MSE 173 ALA 174 LEU 175 ALA 176 VAL 177 GLY 178 ALA 179 GLU 180 VAL 181 VAL 182 PRO 183 SER 184 ARG 185 VAL 186 GLY 187 PRO 188 HIS 189 ASP 190 ALA 191 ALA 192 ALA 193 ALA 194 ARG 195 VAL 196 SER 197 HIS 198 LEU 199 THR 200 HIS 201 ILE 202 LEU 203 ALA 204 GLU 205 THR 206 LEU 207 ALA 208 ILE 209 VAL 210 GLY 211 ASP 212 ASN 213 GLY 214 GLY 215 ALA 216 LEU 217 SER 218 LEU 219 SER 220 LEU 221 ALA 222 ALA 223 GLY 224 SER 225 TYR 226 ARG 227 ASP 228 SER 229 THR 230 ARG 231 VAL 232 ALA 233 GLY 234 THR 235 ASP 236 PRO 237 GLY 238 LEU 239 VAL 240 ARG 241 ALA 242 MSE 243 CYS 244 GLU 245 SER 246 ASN 247 ALA 248 GLY 249 PRO 250 LEU 251 VAL 252 LYS 253 ALA 254 LEU 255 ASP 256 GLU 257 ALA 258 LEU 259 ALA 260 ILE 261 LEU 262 HIS 263 GLU 264 ALA 265 ARG 266 GLU 267 GLY 268 LEU 269 THR 270 ALA 271 GLU 272 GLN 273 PRO 274 ASN 275 ILE 276 GLU 277 GLN 278 LEU 279 ALA 280 ASP 281 ASN 282 GLY 283 TYR 284 ARG 285 SER 286 ARG 287 ILE 288 ARG 289 TYR 290 GLU 291 ALA 292 ARG 293 SER 294 GLY 295 GLN 296 SER 309 SER 310 ARG 311 PRO 312 VAL 313 LEU 314 ARG 315 LEU 316 HIS 317 PRO 318 GLY 319 THR 320 PRO 321 ASN 322 TRP 323 GLU 324 LYS 325 GLN 326 LEU 327 ILE 328 HIS 329 ALA 330 GLU 331 THR 332 LEU 333 GLY 334 ALA 335 ARG 336 ILE 337 GLU 338 VAL 339 PHE 340
Unit 2	ASP 5 ILE 6 SER 7 ARG 8 PRO 9 VAL 10 CYS 11 ILE 12 LEU 13 GLY 14 LEU 15 GLY 16 LEU 17 ILE 18 GLY 19 GLY 20 SER 21 LEU 22 LEU 23 ARG 24 ASP 25 LEU 26 HIS 27 ALA 28 ALA 29 ASN 30 HIS 31 SER 32 VAL 33 PHE 34 GLY 35 TYR 36 ASN 37 ARG 38 SER 39 ARG 40 SER 41 GLY 42 ALA 43 LYS 44 SER 45 ALA 46 VAL 47 ASP 48 GLU 49 GLY 50 PHE 51 ASP 52 VAL 53 SER 54 ALA 55 ASP 56 LEU 57 GLU 58 ALA 59 THR 60 LEU 61 GLN 62 ARG 63 ALA 64 ALA 65 ALA 66 GLU 67 ASP 68 ALA 69 LEU 70 ILE 71 VAL 72 LEU 73 ALA 74 VAL 75 PRO 76 MSE 77 THR 78 ALA 79 ILE 80 ASP 81 SER 82 LEU 83 LEU 84 ASP 85 ALA 86 VAL 87 HIS 88 THR 89 HIS 90 ALA 91 PRO 92 ASN 93 ASN 94 GLY 95 PHE 96 THR 97 ASP 98 VAL 99 VAL 100 SER 101 VAL 102 LYS 103 THR 104 ALA 105 VAL 106 TYR 107 ASP 108 ALA 109 VAL 110 LYS 111 ALA 112 ARG 113 ASN 114 MSE 115 GLN 116 HIS 117 ARG 118 TYR 119 VAL 120 GLY 121 SER 122 HIS 123 PRO 124 MSE 125 ALA 126 GLY 127 THR 128 ALA 129 ASN 130 SER 131 GLY 132 TRP 133 SER 134 ALA 135 SER 136 MSE 137 ASP 138 GLY 139 LEU 140 PHE 141 LYS 142 ARG 143 ALA 144 VAL 145 TRP 146 VAL 147 VAL 148 THR 149 PHE 150 ASP 151 GLN 152 LEU 153 PHE 154 ASP 155 GLY 156 THR 157 ASP 158 ILE 159 ASN 160 SER 161 THR 162 TRP 163 ILE 164 SER 165 ILE 166 TRP 167 LYS 168 ASP 169 VAL 170 VAL 171 GLN 172 MSE 173 ALA 174 LEU 175 ALA 176 VAL 177 GLY 178 ALA 179 GLU 180 VAL 181 VAL 182 PRO 183 SER 184 ARG 185 VAL 186 GLY 187 PRO 188 HIS 189 ASP 190 ALA 191 ALA 192 ALA 193 ALA 194 ARG 195 VAL 196 SER 197 HIS 198 LEU 199 THR 200 HIS 201 ILE 202 LEU 203 ALA 204 GLU 205 THR 206 LEU 207 ALA 208 ILE 209 VAL 210 GLY 211 ASP 212 ASN 213 GLY 214 GLY 215 ALA 216 LEU 217 SER 218 LEU 219 SER 220 LEU 221 ALA 222 ALA 223 GLY 224 SER 225 TYR 226 ARG 227 ASP 228 SER 229 THR 230 ARG 231 VAL 232 ALA 233 GLY 234 THR 235 ASP 236 PRO 237 GLY 238 LEU 239 VAL 240 ARG 241 ALA 242 MSE 243 CYS 244 GLU 245 SER 246 ASN 247 ALA 248 GLY 249 PRO 250 LEU 251 VAL 252 LYS 253 ALA 254 LEU 255 ASP 256 GLU 257 ALA 258 LEU 259 ALA 260 ILE 261 LEU 262 HIS 263 GLU 264 ALA 265 ARG 266 GLU 267 GLY 268 LEU 269 THR 270 ALA 271 GLU 272 GLN 273 PRO 274 ASN 275 ILE 276 GLU 277 GLN 278 LEU 279 ALA 280 ASP 281 ASN 282 GLY 283 TYR 284 ARG 285 SER 286 ARG 287 ILE 288 ARG 289 TYR 290 GLU 291 ALA 292 SER 310 ARG 311 PRO 312 VAL 313 LEU 314 ARG 315 LEU 316 HIS 317 PRO 318 GLY 319 THR 320 PRO 321 ASN 322 TRP 323 GLU 324 LYS 325 GLN 326 LEU 327 ILE 328 HIS 329 ALA 330 GLU 331 THR 332 LEU 333 GLY 334 ALA 335 ARG 336 ILE 337 GLU 338 VAL 339 PHE 340
Unit 3	ASP 5 ILE 6 SER 7 ARG 8 PRO 9 VAL 10 CYS 11 ILE 12 LEU 13 GLY 14 LEU 15 GLY 16 LEU 17 ILE 18 GLY 19 GLY 20 SER 21 LEU 22 LEU 23 ARG 24 ASP 25 LEU 26 HIS 27 ALA 28 ALA 29 ASN 30 HIS 31 SER 32 VAL 33 PHE 34 GLY 35 TYR 36 ASN 37 ARG 38 SER 39 ARG 40 SER 41 GLY 42 ALA 43 LYS 44 SER 45 ALA 46 VAL 47 ASP 48 GLU 49 GLY 50 PHE 51 ASP 52 VAL 53 SER 54 ALA 55 ASP 56 LEU 57 GLU 58 ALA 59 THR 60 LEU 61 GLN 62 ARG 63 ALA 64 ALA 65 ALA 66 GLU 67 ASP 68 ALA 69 LEU 70 ILE 71 VAL 72 LEU 73 ALA 74 VAL 75 PRO 76 MSE 77 THR 78 ALA 79 ILE 80 ASP 81 SER 82 LEU 83 LEU 84 ASP 85 ALA 86 VAL 87 HIS 88 THR 89 HIS 90 ALA 91 PRO 92 ASN 93 ASN 94 GLY 95 PHE 96 THR 97 ASP 98 VAL 99 VAL 100 SER 101 VAL 102 LYS 103 THR 104 ALA 105 VAL 106 TYR 107 ASP 108 ALA 109 VAL 110 LYS 111 ALA 112 ARG 113 ASN 114 MSE 115 GLN 116 HIS 117 ARG 118 TYR 119 VAL 120 GLY 121 SER 122 HIS 123 PRO 124 MSE 125 ALA 126 GLY 127 THR 128 ALA 129 ASN 130 GLY 132 TRP 133 SER 134 ALA 135 SER 136 MSE 137 ASP 138 GLY 139 LEU 140 PHE 141 LYS 142 ARG 143 ALA 144 VAL 145 TRP 146 VAL 147 VAL 148 THR 149 PHE 150 ASP 151 GLN 152 LEU 153 PHE 154 ASP 155 GLY 156 THR 157 ASP 158 ILE 159 ASN 160 SER 161 THR 162 TRP 163 ILE 164 SER 165 ILE 166 TRP 167 LYS 168 ASP 169 VAL 170 VAL 171 GLN 172 MSE 173 ALA 174 LEU 175 ALA 176 VAL 177 GLY 178 ALA 179 GLU 180 VAL 181 VAL 182 PRO 183 SER 184 ARG 185 VAL 186 GLY 187 PRO 188 HIS 189 ASP 190 ALA 191 ALA 192 ALA 193 ALA 194 ARG 195 VAL 196 SER 197 HIS 198 LEU 199 THR 200 HIS 201 ILE 202 LEU 203 ALA 204 GLU 205 THR 206 LEU 207 ALA 208 ILE 209 VAL 210 GLY 211 ASP 212 ASN 213 GLY 214 GLY 215 ALA 216 LEU 217 SER 218 LEU 219 SER 220 LEU 221 ALA 222 ALA 223 GLY 224 SER 225 TYR 226 ARG 227 ASP 228 SER 229 THR 230 ARG 231 VAL 232 ALA 233 GLY 234 THR 235 ASP 236 PRO 237 GLY 238 LEU 239 VAL 240 ARG 241 ALA 242 MSE 243 CYS 244 GLU 245 SER 246 ASN 247 ALA 248 GLY 249 PRO 250 LEU 251 VAL 252 LYS 253 ALA 254 LEU 255 ASP 256 GLU 257 ALA 258 LEU 259 ALA 260 ILE 261 LEU 262 HIS 263 GLU 264 ALA 265 ARG 266 GLU 267 GLY 268 LEU 269 THR 270 ALA 271 GLU 272 GLN 273 PRO 274 ASN 275 ILE 276 GLU 277 GLN 278 LEU 279 ALA 280 ASP 281 ASN 282 GLY 283 TYR 284 ARG 285 SER 286 ARG 287 ILE 288 ARG 289 TYR 290 GLU 291 ALA 292 ARG 293 ARG 311 PRO 312 VAL 313 LEU 314 ARG 315 LEU 316 HIS 317 PRO 318 GLY 319 THR 320 PRO 321 ASN 322 TRP 323 GLU 324 LYS 325 GLN 326 LEU 327 ILE 328 HIS 329 ALA 330 GLU 331 THR 332 LEU 333 GLY 334 ALA 335 ARG 336 ILE 337 GLU 338 VAL 339 PHE 340
Unit 4	ASP 5 ILE 6 SER 7 ARG 8 PRO 9 VAL 10 CYS 11 ILE 12 LEU 13 GLY 14 LEU 15 GLY 16 LEU 17 ILE 18 GLY 19 GLY 20 SER 21 LEU 22 LEU 23 ARG 24 ASP 25 LEU 26 HIS 27 ALA 28 ALA 29 ASN 30 HIS 31 SER 32 VAL 33 PHE 34 GLY 35 TYR 36 ASN 37 ARG 38 SER 39 ARG 40 SER 41 GLY 42 ALA 43 LYS 44 SER 45 ALA 46 VAL 47 ASP 48 GLU 49 GLY 50 PHE 51 ASP 52 VAL 53 SER 54 ALA 55 ASP 56 LEU 57 GLU 58 ALA 59 THR 60 LEU 61 GLN 62 ARG 63 ALA 64 ALA 65 ALA 66 GLU 67 ASP 68 ALA 69 LEU 70 ILE 71 VAL 72 LEU 73 ALA 74 VAL 75 PRO 76 MSE 77 THR 78 ALA 79 ILE 80 ASP 81 SER 82 LEU 83 LEU 84 ASP 85 ALA 86 VAL 87 HIS 88 THR 89 HIS 90 ALA 91 PRO 92 ASN 93 ASN 94 GLY 95 PHE 96 THR 97 ASP 98 VAL 99 VAL 100 SER 101 VAL 102 LYS 103 THR 104 ALA 105 VAL 106 TYR 107 ASP 108 ALA 109 VAL 110 LYS 111 ALA 112 ARG 113 ASN 114 MSE 115 GLN 116 HIS 117 ARG 118 TYR 119 VAL 120 GLY 121 SER 122 HIS 123 PRO 124 MSE 125 ALA 126 GLY 127 THR 128 ALA 129 SER 131 GLY 132 TRP 133 SER 134 ALA 135 SER 136 MSE 137 ASP 138 GLY 139 LEU 140 PHE 141 LYS 142 ARG 143 ALA 144 VAL 145 TRP 146 VAL 147 VAL 148 THR 149 PHE 150 ASP 151 GLN 152 LEU 153 PHE 154 ASP 155 GLY 156 THR 157 ASP 158 ILE 159 ASN 160 SER 161 THR 162 TRP 163 ILE 164 SER 165 ILE 166 TRP 167 LYS 168 ASP 169 VAL 170 VAL 171 GLN 172 MSE 173 ALA 174 LEU 175 ALA 176 VAL 177 GLY 178 ALA 179 GLU 180 VAL 181 VAL 182 PRO 183 SER 184 ARG 185 VAL 186 GLY 187 PRO 188 HIS 189 ASP 190 ALA 191 ALA 192 ALA 193 ALA 194 ARG 195 VAL 196 SER 197 HIS 198 LEU 199 THR 200 HIS 201 ILE 202 LEU 203 ALA 204 GLU 205 THR 206 LEU 207 ALA 208 ILE 209 VAL 210 GLY 211 ASP 212 ASN 213 GLY 214 GLY 215 ALA 216 LEU 217 SER 218 LEU 219 SER 220 LEU 221 ALA 222 ALA 223 GLY 224 SER 225 TYR 226 ARG 227 ASP 228 SER 229 THR 230 ARG 231 VAL 232 ALA 233 GLY 234 THR 235 ASP 236 PRO 237 GLY 238 LEU 239 VAL 240 ARG 241 ALA 242 MSE 243 CYS 244 GLU 245 SER 246 ASN 247 ALA 248 GLY 249 PRO 250 LEU 251 VAL 252 LYS 253 ALA 254 LEU 255 ASP 256 GLU 257 ALA 258 LEU 259 ALA 260 ILE 261 LEU 262 HIS 263 GLU 264 ALA 265 ARG 266 GLU 267 GLY 268 LEU 269 THR 270 ALA 271 GLU 272 GLN 273 PRO 274 ASN 275 ILE 276 GLU 277 GLN 278 LEU 279 ALA 280 ASP 281 ASN 282 GLY 283 TYR 284 ARG 285 SER 286 ARG 287 ILE 288 ARG 289 TYR 290 GLU 291 ALA 292 ARG 293 SER 294 SER 309 SER 310 ARG 311 PRO 312 VAL 313 LEU 314 ARG 315 LEU 316 HIS 317 PRO 318 GLY 319 THR 320 PRO 321 ASN 322 TRP 323 GLU 324 LYS 325 GLN 326 LEU 327 ILE 328 HIS 329 ALA 330 GLU 331 THR 332 LEU 333 GLY 334 ALA 335 ARG 336 ILE 337 GLU 338 VAL 339 PHE 340

Ligands

Unit 5

EDO 341 PEG 342