3KRA - Sequence, Chains, Asymmetric and Biological Units

• Title: MINT HETEROTETRAMERIC GERANYL PYROPHOSPHATE SYNTHASE IN COMP MAGNESIUM
• Keywords: PRENYLTRANSFERASE, ISOPRENE BIOSYNTHESIS, ISOPRENYL PYROPHOS SYNTHASE, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KRA	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GERANYL DIPHOSPHATE SYNTHASE LARGE SUBUNIT	A	279	2120	0
2	Protein	GERANYL DIPHOSPHATE SYNTHASE SMALL SUBUNIT	B	259	1954	0
3	Protein	GERANYL DIPHOSPHATE SYNTHASE SMALL SUBUNIT	C	271	2056	0
4	Protein	GERANYL DIPHOSPHATE SYNTHASE LARGE SUBUNIT	D	277	2102	0
5	Ligand	GERANYL DIPHOSPHATE SYNTHASE LARGE SUBUNIT	A	2	0	2
6	Ligand	GERANYL DIPHOSPHATE SYNTHASE SMALL SUBUNIT	C	1	0	4
7	Ligand	GERANYL DIPHOSPHATE SYNTHASE LARGE SUBUNIT	D	1	0	1
8	Water			1301	0	1301
total				2391	8232	1308

Proteins

Unit 1	MET 1 PHE 2 ASP 3 PHE 4 ASP 5 GLY 6 TYR 7 MET 8 LEU 9 ARG 10 LYS 11 ALA 12 LYS 13 SER 14 VAL 15 ASN 16 LYS 17 ALA 18 LEU 19 GLU 20 ALA 21 ALA 22 VAL 23 GLN 24 MET 25 LYS 26 GLU 27 PRO 28 LEU 29 LYS 30 ILE 31 HIS 32 GLU 33 SER 34 MET 35 ARG 36 TYR 37 SER 38 LEU 39 LEU 40 ALA 41 GLY 42 GLY 43 LYS 44 ARG 45 VAL 46 ARG 47 PRO 48 MET 49 LEU 50 CYS 51 ILE 52 ALA 53 ALA 54 CYS 55 GLU 56 LEU 57 VAL 58 GLY 59 GLY 60 ASP 61 GLU 62 SER 63 THR 64 ALA 65 MET 66 PRO 67 ALA 68 ALA 69 CYS 70 ALA 71 VAL 72 GLU 73 MET 74 ILE 75 HIS 76 THR 77 MET 78 SER 79 LEU 80 MET 81 HIS 82 ASP 83 ASP 84 LEU 85 PRO 86 CYS 87 MET 88 ASP 89 ASN 90 ASP 91 ASP 92 LEU 93 ARG 94 ARG 95 GLY 96 LYS 97 PRO 98 THR 99 ASN 100 HIS 101 MET 102 ALA 103 PHE 104 GLY 105 GLU 106 SER 107 VAL 108 ALA 109 VAL 110 LEU 111 ALA 112 GLY 113 ASP 114 ALA 115 LEU 116 LEU 117 SER 118 PHE 119 ALA 120 PHE 121 GLU 122 HIS 123 VAL 124 ALA 125 ALA 126 ALA 127 THR 128 LYS 129 GLY 130 ALA 131 PRO 132 PRO 133 GLU 134 ARG 135 ILE 136 VAL 137 ARG 138 VAL 139 LEU 140 GLY 141 GLU 142 LEU 143 ALA 144 VAL 145 SER 146 ILE 147 GLY 148 SER 149 GLU 150 GLY 151 LEU 152 VAL 153 ALA 154 GLY 155 GLN 156 VAL 157 VAL 158 ASP 159 VAL 160 CYS 161 SER 162 GLU 163 GLY 164 MET 165 ALA 166 GLU 167 VAL 168 GLY 169 LEU 170 ASP 171 HIS 172 LEU 173 GLU 174 PHE 175 ILE 176 HIS 177 HIS 178 HIS 179 LYS 180 THR 181 ALA 182 ALA 183 LEU 184 LEU 185 GLN 186 GLY 187 SER 188 VAL 189 VAL 190 LEU 191 GLY 192 ALA 193 ILE 194 LEU 195 GLY 196 GLY 197 GLY 198 LYS 199 GLU 200 GLU 201 GLU 202 VAL 203 ALA 204 LYS 205 LEU 206 ARG 207 LYS 208 PHE 209 ALA 210 ASN 211 CYS 212 ILE 213 GLY 214 LEU 215 LEU 216 PHE 217 GLN 218 VAL 219 VAL 220 ASP 221 ASP 222 ILE 223 LEU 224 ASP 225 VAL 226 THR 227 LYS 228 LYS 245 THR 246 THR 247 TYR 248 PRO 249 LYS 250 LEU 251 ILE 252 GLY 253 VAL 254 GLU 255 LYS 256 SER 257 LYS 258 GLU 259 PHE 260 ALA 261 ASP 262 ARG 263 LEU 264 ASN 265 ARG 266 GLU 267 ALA 268 GLN 269 GLU 270 GLN 271 LEU 272 LEU 273 HIS 274 PHE 275 HIS 276 PRO 277 HIS 278 ARG 279 ALA 280 ALA 281 PRO 282 LEU 283 ILE 284 ALA 285 LEU 286 ALA 287 ASN 288 TYR 289 ILE 290 ALA 291 TYR 292 ARG 293 ASP 294 ASN 295
Unit 2	MET 1 GLN 2 PRO 3 TYR 4 TRP 5 ALA 6 ALA 7 ILE 8 GLU 9 ALA 10 ASP 11 ILE 12 GLU 13 ARG 14 TYR 15 LEU 16 LYS 17 LYS 18 SER 19 ILE 20 THR 21 ILE 22 ARG 23 PRO 24 PRO 25 GLU 26 THR 27 VAL 28 PHE 29 GLY 30 PRO 31 MET 32 HIS 33 HIS 34 LEU 35 THR 36 PHE 37 ALA 38 ALA 39 PRO 40 ALA 41 THR 42 ALA 43 ALA 44 SER 45 THR 46 LEU 47 CYS 48 LEU 49 ALA 50 ALA 51 CYS 52 GLU 53 LEU 54 VAL 55 GLY 56 GLY 57 ASP 58 ARG 59 SER 60 GLN 61 ALA 62 MET 63 ALA 64 ALA 65 ALA 66 ALA 67 ALA 68 ILE 69 HIS 70 LEU 71 VAL 72 HIS 73 ALA 74 ALA 75 ALA 76 TYR 77 VAL 78 HIS 79 GLU 80 HIS 81 LEU 82 PRO 83 LEU 84 THR 85 ASP 86 GLY 87 SER 88 ARG 89 PRO 90 VAL 91 SER 92 LYS 93 PRO 94 ALA 95 ILE 96 GLN 97 HIS 98 LYS 99 TYR 100 GLY 101 PRO 102 ASN 103 VAL 104 GLU 105 LEU 106 LEU 107 THR 108 GLY 109 ASP 110 GLY 111 ILE 112 VAL 113 PRO 114 PHE 115 GLY 116 PHE 117 GLU 118 LEU 119 LEU 120 ALA 121 GLY 122 SER 123 VAL 124 ASP 125 PRO 126 ALA 127 ARG 128 THR 129 ASP 130 ASP 131 PRO 132 ASP 133 ARG 134 ILE 135 LEU 136 ARG 137 VAL 138 ILE 139 ILE 140 GLU 141 ILE 142 SER 143 ARG 144 ALA 145 GLY 146 GLY 147 PRO 148 GLU 149 GLY 150 MET 151 ILE 152 SER 153 GLY 154 LEU 155 HIS 156 ARG 157 GLU 158 GLU 159 GLU 160 ILE 161 VAL 162 ASP 163 GLY 164 ASN 165 THR 166 SER 167 LEU 168 ASP 169 PHE 170 ILE 171 GLU 172 TYR 173 VAL 174 CYS 175 LYS 176 LYS 177 LYS 178 TYR 179 GLY 180 GLU 181 MET 182 HIS 183 ALA 184 CYS 185 GLY 186 ALA 187 ALA 188 CYS 189 GLY 190 ALA 191 ILE 192 LEU 193 GLY 194 GLY 195 ALA 196 ALA 197 GLU 198 GLU 199 GLU 200 ILE 201 GLN 202 LYS 203 LEU 204 ARG 205 ASN 206 PHE 207 GLY 208 LEU 209 TYR 210 GLN 211 GLY 212 THR 213 LEU 214 ARG 215 GLY 216 MET 217 MET 218 GLU 219 MET 220 LYS 221 ASN 222 SER 223 HIS 224 GLN 225 LEU 226 ILE 227 ASP 228 GLU 229 ASN 230 ILE 231 ILE 232 GLY 233 LYS 234 LEU 235 LYS 236 GLU 237 LEU 238 ALA 239 LEU 240 GLU 241 GLU 242 LEU 243 GLY 244 GLY 245 PHE 246 HIS 247 GLY 248 LYS 249 ASN 250 ALA 251 GLU 252 LEU 253 MET 254 SER 255 SER 256 LEU 257 VAL 258 ALA 259
Unit 3	MET 1 GLN 2 PRO 3 TYR 4 TRP 5 ALA 6 ALA 7 ILE 8 GLU 9 ALA 10 ASP 11 ILE 12 GLU 13 ARG 14 TYR 15 LEU 16 LYS 17 LYS 18 SER 19 ILE 20 THR 21 ILE 22 ARG 23 PRO 24 PRO 25 GLU 26 THR 27 VAL 28 PHE 29 GLY 30 PRO 31 MET 32 HIS 33 HIS 34 LEU 35 THR 36 PHE 37 ALA 38 ALA 39 PRO 40 ALA 41 THR 42 ALA 43 ALA 44 SER 45 THR 46 LEU 47 CYS 48 LEU 49 ALA 50 ALA 51 CYS 52 GLU 53 LEU 54 VAL 55 GLY 56 GLY 57 ASP 58 ARG 59 SER 60 GLN 61 ALA 62 MET 63 ALA 64 ALA 65 ALA 66 ALA 67 ALA 68 ILE 69 HIS 70 LEU 71 VAL 72 HIS 73 ALA 74 ALA 75 ALA 76 TYR 77 VAL 78 HIS 79 GLU 80 HIS 81 LEU 82 PRO 83 LEU 84 THR 85 ASP 86 GLY 87 SER 88 ARG 89 PRO 90 VAL 91 SER 92 LYS 93 PRO 94 ALA 95 ILE 96 GLN 97 HIS 98 LYS 99 TYR 100 GLY 101 PRO 102 ASN 103 VAL 104 GLU 105 LEU 106 LEU 107 THR 108 GLY 109 ASP 110 GLY 111 ILE 112 VAL 113 PRO 114 PHE 115 GLY 116 PHE 117 GLU 118 LEU 119 LEU 120 ALA 121 GLY 122 SER 123 VAL 124 ASP 125 PRO 126 ALA 127 ARG 128 THR 129 ASP 130 ASP 131 PRO 132 ASP 133 ARG 134 ILE 135 LEU 136 ARG 137 VAL 138 ILE 139 ILE 140 GLU 141 ILE 142 SER 143 ARG 144 ALA 145 GLY 146 GLY 147 PRO 148 GLU 149 GLY 150 MET 151 ILE 152 SER 153 GLY 154 LEU 155 HIS 156 ARG 157 GLU 158 GLU 159 GLU 160 ILE 161 VAL 162 ASP 163 GLY 164 ASN 165 THR 166 SER 167 LEU 168 ASP 169 PHE 170 ILE 171 GLU 172 TYR 173 VAL 174 CYS 175 LYS 176 LYS 177 LYS 178 TYR 179 GLY 180 GLU 181 MET 182 HIS 183 ALA 184 CYS 185 GLY 186 ALA 187 ALA 188 CYS 189 GLY 190 ALA 191 ILE 192 LEU 193 GLY 194 GLY 195 ALA 196 ALA 197 GLU 198 GLU 199 GLU 200 ILE 201 GLN 202 LYS 203 LEU 204 ARG 205 ASN 206 PHE 207 GLY 208 LEU 209 TYR 210 GLN 211 GLY 212 THR 213 LEU 214 ARG 215 GLY 216 MET 217 MET 218 GLU 219 MET 220 LYS 221 ASN 222 SER 223 HIS 224 GLN 225 LEU 226 ILE 227 ASP 228 GLU 229 ASN 230 ILE 231 ILE 232 GLY 233 LYS 234 LEU 235 LYS 236 GLU 237 LEU 238 ALA 239 LEU 240 GLU 241 GLU 242 LEU 243 GLY 244 GLY 245 PHE 246 HIS 247 GLY 248 LYS 249 ASN 250 ALA 251 GLU 252 LEU 253 MET 254 SER 255 SER 256 LEU 257 VAL 258 ALA 259 GLU 260 PRO 261 SER 262 LEU 263 TYR 264 ALA 265 ALA 266 HIS 267 HIS 268 HIS 269 HIS 270 HIS 271
Unit 4	MET 1 PHE 2 ASP 3 PHE 4 ASP 5 GLY 6 TYR 7 MET 8 LEU 9 ARG 10 LYS 11 ALA 12 LYS 13 SER 14 VAL 15 ASN 16 LYS 17 ALA 18 LEU 19 GLU 20 ALA 21 ALA 22 VAL 23 GLN 24 MET 25 LYS 26 GLU 27 PRO 28 LEU 29 LYS 30 ILE 31 HIS 32 GLU 33 SER 34 MET 35 ARG 36 TYR 37 SER 38 LEU 39 LEU 40 ALA 41 GLY 42 GLY 43 LYS 44 ARG 45 VAL 46 ARG 47 PRO 48 MET 49 LEU 50 CYS 51 ILE 52 ALA 53 ALA 54 CYS 55 GLU 56 LEU 57 VAL 58 GLY 59 GLY 60 ASP 61 GLU 62 SER 63 THR 64 ALA 65 MET 66 PRO 67 ALA 68 ALA 69 CYS 70 ALA 71 VAL 72 GLU 73 MET 74 ILE 75 HIS 76 THR 77 MET 78 SER 79 LEU 80 MET 81 HIS 82 ASP 83 ASP 84 LEU 85 PRO 86 CYS 87 MET 88 ASP 89 ASN 90 ASP 91 ASP 92 LEU 93 ARG 94 ARG 95 GLY 96 LYS 97 PRO 98 THR 99 ASN 100 HIS 101 MET 102 ALA 103 PHE 104 GLY 105 GLU 106 SER 107 VAL 108 ALA 109 VAL 110 LEU 111 ALA 112 GLY 113 ASP 114 ALA 115 LEU 116 LEU 117 SER 118 PHE 119 ALA 120 PHE 121 GLU 122 HIS 123 VAL 124 ALA 125 ALA 126 ALA 127 THR 128 LYS 129 GLY 130 ALA 131 PRO 132 PRO 133 GLU 134 ARG 135 ILE 136 VAL 137 ARG 138 VAL 139 LEU 140 GLY 141 GLU 142 LEU 143 ALA 144 VAL 145 SER 146 ILE 147 GLY 148 SER 149 GLU 150 GLY 151 LEU 152 VAL 153 ALA 154 GLY 155 GLN 156 VAL 157 VAL 158 ASP 159 VAL 160 CYS 161 SER 162 GLU 163 GLY 164 MET 165 ALA 166 GLU 167 VAL 168 GLY 169 LEU 170 ASP 171 HIS 172 LEU 173 GLU 174 PHE 175 ILE 176 HIS 177 HIS 178 HIS 179 LYS 180 THR 181 ALA 182 ALA 183 LEU 184 LEU 185 GLN 186 GLY 187 SER 188 VAL 189 VAL 190 LEU 191 GLY 192 ALA 193 ILE 194 LEU 195 GLY 196 GLY 197 GLY 198 LYS 199 GLU 200 GLU 201 GLU 202 VAL 203 ALA 204 LYS 205 LEU 206 ARG 207 LYS 208 PHE 209 ALA 210 ASN 211 CYS 212 ILE 213 GLY 214 LEU 215 LEU 216 PHE 217 GLN 218 VAL 219 VAL 220 ASP 221 ASP 222 ILE 223 LEU 224 ASP 225 VAL 226 THR 227 THR 246 THR 247 TYR 248 PRO 249 LYS 250 LEU 251 ILE 252 GLY 253 VAL 254 GLU 255 LYS 256 SER 257 LYS 258 GLU 259 PHE 260 ALA 261 ASP 262 ARG 263 LEU 264 ASN 265 ARG 266 GLU 267 ALA 268 GLN 269 GLU 270 GLN 271 LEU 272 LEU 273 HIS 274 PHE 275 HIS 276 PRO 277 HIS 278 ARG 279 ALA 280 ALA 281 PRO 282 LEU 283 ILE 284 ALA 285 LEU 286 ALA 287 ASN 288 TYR 289 ILE 290 ALA 291 TYR 292 ARG 293 ASP 294 ASN 295

Ligands

Unit 5	MG 3002 MG 3003
Unit 6	EDO 2001
Unit 7	MG 3001