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Sequence, Chains, Asymmetric and Biological Units

Title THREE CONFORMATIONAL SNAPSHOTS OF THE HEPATITIS C VIRUS NS3 REVEAL A RATCHET TRANSLOCATION MECHANISM
Keywords HCV, NS3 PROTEIN, HELICASE, DNA-BINDING, HYDROLASE-DNA COMPL
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3KQH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SERINE PROTEASE/NTPASE/HELICASE NS3  A 436 3275 0
2  Protein   SERINE PROTEASE/NTPASE/HELICASE NS3  B 436 3275 0
3  Other macromolecule   5'-D(*AP*AP*AP*AP*AP*A)-3'  C 6 123 0
4  Other macromolecule   5'-D(*AP*AP*AP*AP*AP*A)-3'  D 6 123 0
5 Water     138 0 138
total       1022 6796 138
Proteins
Unit 1 SER189 PRO190 PRO191 ALA192 VAL193 PRO194 GLN195 THR196 PHE197 GLN198 VAL199 ALA200 HIS201 LEU202 HIS203 ALA204 PRO205 THR206 GLY207 SER208 GLY209 LYS210 SER211 THR212 LYS213 VAL214 PRO215 ALA216 ALA217 TYR218 ALA219 ALA220 GLN221 GLY222 TYR223 LYS224 VAL225 LEU226 VAL227 LEU228 ASN229 PRO230 SER231 VAL232 ALA233 ALA234 THR235 LEU236 GLY237 PHE238 GLY239 ALA240 TYR241 MET242 SER243 LYS244 ALA245 HIS246 GLY247 ILE248 ASP249 PRO250 ASN251 ILE252 ARG253 THR254 GLY255 VAL256 ARG257 THR258 ILE259 THR260 THR261 GLY262 ALA263 PRO264 ILE265 THR266 TYR267 SER268 THR269 TYR270 GLY271 LYS272 PHE273 LEU274 ALA275 ASP276 GLY277 GLY278 CYS279 SER280 GLY281 GLY282 ALA283 TYR284 ASP285 ILE286 ILE287 ILE288 CYS289 ASP290 GLU291 CYS292 HIS293 SER294 THR295 ASP296 SER297 THR298 THR299 ILE300 LEU301 GLY302 ILE303 GLY304 THR305 VAL306 LEU307 ASP308 GLN309 ALA310 GLU311 THR312 ALA313 GLY314 ALA315 ARG316 LEU317 VAL318 VAL319 LEU320 ALA321 THR322 ALA323 THR324 PRO325 PRO326 GLY327 SER328 VAL329 THR330 VAL331 PRO332 HIS333 PRO334 ASN335 ILE336 GLU337 GLU338 VAL339 ALA340 LEU341 SER342 SER343 THR344 GLY345 GLU346 ILE347 PRO348 PHE349 TYR350 GLY351 LYS352 ALA353 ILE354 PRO355 ILE356 GLU357 THR358 ILE359 LYS360 GLY361 GLY362 ARG363 HIS364 LEU365 ILE366 PHE367 CYS368 HIS369 SER370 LYS371 LYS372 LYS373 CYS374 ASP375 GLU376 LEU377 ALA378 ALA379 LYS380 LEU381 SER382 GLY383 LEU384 GLY385 LEU386 ASN387 ALA388 VAL389 ALA390 TYR391 TYR392 ARG393 GLY394 LEU395 ASP396 VAL397 SER398 VAL399 ILE400 PRO401 THR402 SER403 GLY404 ASP405 VAL406 ILE407 VAL408 VAL409 ALA410 THR411 ASP412 ALA413 LEU414 MET415 THR416 GLY417 PHE418 THR419 GLY420 ASP421 PHE422 ASP423 SER424 VAL425 ILE426 ASP427 CYS428 ASN429 THR430 CYS431 VAL432 THR433 GLN434 THR435 VAL436 ASP437 PHE438 SER439 LEU440 ASP441 PRO442 THR443 PHE444 THR445 ILE446 GLU447 THR448 THR449 THR450 VAL451 PRO452 GLN453 ASP454 ALA455 VAL456 SER457 ARG458 SER459 GLN460 ARG461 ARG462 GLY463 ARG464 THR465 GLY466 ARG467 GLY468 ARG469 MET470 GLY471 ILE472 TYR473 ARG474 PHE475 VAL476 THR477 PRO478 GLY479 GLU480 ARG481 PRO482 SER483 GLY484 MET485 PHE486 ASP487 SER488 SER489 VAL490 LEU491 CYS492 GLU493 CYS494 TYR495 ASP496 ALA497 GLY498 CYS499 ALA500 TRP501 TYR502 GLU503 LEU504 THR505 PRO506 ALA507 GLU508 THR509 SER510 VAL511 ARG512 LEU513 ARG514 ALA515 TYR516 LEU517 ASN518 THR519 PRO520 GLY521 LEU522 PRO523 VAL524 CYS525 GLN526 ASP527 HIS528 LEU529 GLU530 PHE531 TRP532 GLU533 SER534 VAL535 PHE536 THR537 GLY538 LEU539 THR540 HIS541 ILE542 ASP543 ALA544 HIS545 PHE546 LEU547 SER548 GLN549 THR550 LYS551 GLN552 ALA553 GLY554 ASP555 ASN556 PHE557 PRO558 TYR559 LEU560 VAL561 ALA562 TYR563 GLN564 ALA565 THR566 VAL567 CYS568 ALA569 ARG570 ALA571 GLN572 ALA573 PRO574 PRO575 PRO576 SER577 TRP578 ASP579 GLN580 MET581 TRP582 LYS583 CYS584 LEU585 ILE586 ARG587 LEU588 LYS589 PRO590 THR591 LEU592 HIS593 GLY594 PRO595 THR596 PRO597 LEU598 LEU599 TYR600 ARG601 LEU602 GLY603 ALA604 VAL605 GLN606 ASN607 GLU608 VAL609 THR610 THR611 THR612 HIS613 PRO614 ILE615 THR616 LYS617 TYR618 ILE619 MET620 ALA621 CYS622 MET623 SER624
Unit 2 SER189 PRO190 PRO191 ALA192 VAL193 PRO194 GLN195 THR196 PHE197 GLN198 VAL199 ALA200 HIS201 LEU202 HIS203 ALA204 PRO205 THR206 GLY207 SER208 GLY209 LYS210 SER211 THR212 LYS213 VAL214 PRO215 ALA216 ALA217 TYR218 ALA219 ALA220 GLN221 GLY222 TYR223 LYS224 VAL225 LEU226 VAL227 LEU228 ASN229 PRO230 SER231 VAL232 ALA233 ALA234 THR235 LEU236 GLY237 PHE238 GLY239 ALA240 TYR241 MET242 SER243 LYS244 ALA245 HIS246 GLY247 ILE248 ASP249 PRO250 ASN251 ILE252 ARG253 THR254 GLY255 VAL256 ARG257 THR258 ILE259 THR260 THR261 GLY262 ALA263 PRO264 ILE265 THR266 TYR267 SER268 THR269 TYR270 GLY271 LYS272 PHE273 LEU274 ALA275 ASP276 GLY277 GLY278 CYS279 SER280 GLY281 GLY282 ALA283 TYR284 ASP285 ILE286 ILE287 ILE288 CYS289 ASP290 GLU291 CYS292 HIS293 SER294 THR295 ASP296 SER297 THR298 THR299 ILE300 LEU301 GLY302 ILE303 GLY304 THR305 VAL306 LEU307 ASP308 GLN309 ALA310 GLU311 THR312 ALA313 GLY314 ALA315 ARG316 LEU317 VAL318 VAL319 LEU320 ALA321 THR322 ALA323 THR324 PRO325 PRO326 GLY327 SER328 VAL329 THR330 VAL331 PRO332 HIS333 PRO334 ASN335 ILE336 GLU337 GLU338 VAL339 ALA340 LEU341 SER342 SER343 THR344 GLY345 GLU346 ILE347 PRO348 PHE349 TYR350 GLY351 LYS352 ALA353 ILE354 PRO355 ILE356 GLU357 THR358 ILE359 LYS360 GLY361 GLY362 ARG363 HIS364 LEU365 ILE366 PHE367 CYS368 HIS369 SER370 LYS371 LYS372 LYS373 CYS374 ASP375 GLU376 LEU377 ALA378 ALA379 LYS380 LEU381 SER382 GLY383 LEU384 GLY385 LEU386 ASN387 ALA388 VAL389 ALA390 TYR391 TYR392 ARG393 GLY394 LEU395 ASP396 VAL397 SER398 VAL399 ILE400 PRO401 THR402 SER403 GLY404 ASP405 VAL406 ILE407 VAL408 VAL409 ALA410 THR411 ASP412 ALA413 LEU414 MET415 THR416 GLY417 PHE418 THR419 GLY420 ASP421 PHE422 ASP423 SER424 VAL425 ILE426 ASP427 CYS428 ASN429 THR430 CYS431 VAL432 THR433 GLN434 THR435 VAL436 ASP437 PHE438 SER439 LEU440 ASP441 PRO442 THR443 PHE444 THR445 ILE446 GLU447 THR448 THR449 THR450 VAL451 PRO452 GLN453 ASP454 ALA455 VAL456 SER457 ARG458 SER459 GLN460 ARG461 ARG462 GLY463 ARG464 THR465 GLY466 ARG467 GLY468 ARG469 MET470 GLY471 ILE472 TYR473 ARG474 PHE475 VAL476 THR477 PRO478 GLY479 GLU480 ARG481 PRO482 SER483 GLY484 MET485 PHE486 ASP487 SER488 SER489 VAL490 LEU491 CYS492 GLU493 CYS494 TYR495 ASP496 ALA497 GLY498 CYS499 ALA500 TRP501 TYR502 GLU503 LEU504 THR505 PRO506 ALA507 GLU508 THR509 SER510 VAL511 ARG512 LEU513 ARG514 ALA515 TYR516 LEU517 ASN518 THR519 PRO520 GLY521 LEU522 PRO523 VAL524 CYS525 GLN526 ASP527 HIS528 LEU529 GLU530 PHE531 TRP532 GLU533 SER534 VAL535 PHE536 THR537 GLY538 LEU539 THR540 HIS541 ILE542 ASP543 ALA544 HIS545 PHE546 LEU547 SER548 GLN549 THR550 LYS551 GLN552 ALA553 GLY554 ASP555 ASN556 PHE557 PRO558 TYR559 LEU560 VAL561 ALA562 TYR563 GLN564 ALA565 THR566 VAL567 CYS568 ALA569 ARG570 ALA571 GLN572 ALA573 PRO574 PRO575 PRO576 SER577 TRP578 ASP579 GLN580 MET581 TRP582 LYS583 CYS584 LEU585 ILE586 ARG587 LEU588 LYS589 PRO590 THR591 LEU592 HIS593 GLY594 PRO595 THR596 PRO597 LEU598 LEU599 TYR600 ARG601 LEU602 GLY603 ALA604 VAL605 GLN606 ASN607 GLU608 VAL609 THR610 THR611 THR612 HIS613 PRO614 ILE615 THR616 LYS617 TYR618 ILE619 MET620 ALA621 CYS622 MET623 SER624
Other macromolecules
Unit 3 DA1 DA2 DA3 DA4 DA5 DA6
Unit 4 DA1 DA2 DA3 DA4 DA5 DA6
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany