3KO2 - Sequence, Chains, Asymmetric and Biological Units

• Title: I-MSOI RE-DESIGNED FOR ALTERED DNA CLEAVAGE SPECIFICITY (-7C
• Keywords: REDESIGN, PROTEIN-DNA COMPLEX, CHLOROPLAST, ENDONUCLEASE, HY DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KO2	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SITE-SPECIFIC DNA ENDONUCLEASE I-MSOI	A	161	1316	0
2	Protein	SITE-SPECIFIC DNA ENDONUCLEASE I-MSOI	B	161	1316	0
3	Other macromolecule	5'-D(*GP*CP*AP*GP*AP*CP*CP*GP*TP*CP*GP*TP*GP*AP*G *GP*TP*TP*CP*CP*G)-3'	C	24	491	0
4	Other macromolecule	5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*G *GP*TP*CP*TP*GP*C)-3'	D	24	487	0
5	Protein	SITE-SPECIFIC DNA ENDONUCLEASE I-MSOI	F	161	1316	0
6	Protein	SITE-SPECIFIC DNA ENDONUCLEASE I-MSOI	G	161	1316	0
7	Other macromolecule	5'-D(*GP*CP*AP*GP*AP*CP*CP*GP*TP*CP*GP*TP*GP*AP*G *GP*TP*TP*CP*CP*G)-3'	H	24	491	0
8	Other macromolecule	5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*G *GP*TP*CP*TP*GP*C)-3'	I	24	487	0
9	Ligand	SITE-SPECIFIC DNA ENDONUCLEASE I-MSOI	A	2	0	2
10	Ligand	5'-D(*GP*CP*AP*GP*AP*CP*CP*GP*TP*CP*GP*TP*GP*AP*G *GP*TP*TP*CP*CP*G)-3'	C	1	0	1
11	Ligand	SITE-SPECIFIC DNA ENDONUCLEASE I-MSOI	F	2	0	2
12	Ligand	5'-D(*GP*CP*AP*GP*AP*CP*CP*GP*TP*CP*GP*TP*GP*AP*G *GP*TP*TP*CP*CP*G)-3'	H	1	0	1
13	Water			5	0	6
total				751	7220	12

Proteins

Unit 1	THR 6 LEU 7 GLN 8 PRO 9 THR 10 GLU 11 ALA 12 ALA 13 TYR 14 ILE 15 ALA 16 GLY 17 PHE 18 LEU 19 ASP 20 GLY 21 ASP 22 GLY 23 SER 24 ILE 25 TYR 26 ALA 27 ARG 28 LEU 29 ILE 30 PRO 31 ARG 32 PRO 33 ASP 34 TYR 35 LYS 36 ASP 37 ILE 38 LYS 39 TYR 40 GLN 41 VAL 42 GLU 43 LEU 44 ALA 45 ILE 46 SER 47 PHE 48 ILE 49 GLN 50 ARG 51 LYS 52 ASP 53 LYS 54 PHE 55 PRO 56 TYR 57 LEU 58 GLN 59 ASP 60 ILE 61 TYR 62 ASP 63 GLN 64 LEU 65 GLY 66 LYS 67 ARG 68 GLY 69 THR 70 LEU 71 ARG 72 LYS 73 ASP 74 ARG 75 GLY 76 ASP 77 GLY 78 ILE 79 ALA 80 ASP 81 TYR 82 THR 83 ILE 84 TRP 85 GLY 86 SER 87 THR 88 HIS 89 LEU 90 SER 91 ILE 92 ILE 93 LEU 94 PRO 95 ASP 96 LEU 97 VAL 98 PRO 99 TYR 100 LEU 101 ARG 102 ILE 103 LYS 104 LYS 105 LYS 106 GLN 107 ALA 108 ASN 109 ARG 110 ILE 111 LEU 112 HIS 113 ILE 114 ILE 115 ASN 116 LEU 117 TYR 118 PRO 119 GLN 120 ALA 121 GLN 122 LYS 123 ASN 124 PRO 125 SER 126 LYS 127 PHE 128 LEU 129 ASP 130 LEU 131 VAL 132 LYS 133 ILE 134 VAL 135 ASP 136 ASP 137 VAL 138 GLN 139 ASN 140 LEU 141 ASN 142 LYS 143 ARG 144 ALA 145 ASP 146 GLU 147 LEU 148 LYS 149 SER 150 THR 151 ASN 152 TYR 153 ASP 154 ARG 155 LEU 156 LEU 157 GLU 158 GLU 159 PHE 160 LEU 161 LYS 162 ALA 163 GLY 164 LYS 165 ILE 166
Unit 2	THR 6 LEU 7 GLN 8 PRO 9 THR 10 GLU 11 ALA 12 ALA 13 TYR 14 ILE 15 ALA 16 GLY 17 PHE 18 LEU 19 ASP 20 GLY 21 ASP 22 GLY 23 SER 24 ILE 25 TYR 26 ALA 27 ARG 28 LEU 29 ILE 30 PRO 31 ARG 32 PRO 33 ASP 34 TYR 35 LYS 36 ASP 37 ILE 38 LYS 39 TYR 40 GLN 41 VAL 42 GLU 43 LEU 44 ALA 45 ILE 46 SER 47 PHE 48 ILE 49 GLN 50 ARG 51 LYS 52 ASP 53 LYS 54 PHE 55 PRO 56 TYR 57 LEU 58 GLN 59 ASP 60 ILE 61 TYR 62 ASP 63 GLN 64 LEU 65 GLY 66 LYS 67 ARG 68 GLY 69 THR 70 LEU 71 ARG 72 LYS 73 ASP 74 ARG 75 GLY 76 ASP 77 GLY 78 ILE 79 ALA 80 ASP 81 TYR 82 THR 83 ILE 84 TRP 85 GLY 86 SER 87 THR 88 HIS 89 LEU 90 SER 91 ILE 92 ILE 93 LEU 94 PRO 95 ASP 96 LEU 97 VAL 98 PRO 99 TYR 100 LEU 101 ARG 102 ILE 103 LYS 104 LYS 105 LYS 106 GLN 107 ALA 108 ASN 109 ARG 110 ILE 111 LEU 112 HIS 113 ILE 114 ILE 115 ASN 116 LEU 117 TYR 118 PRO 119 GLN 120 ALA 121 GLN 122 LYS 123 ASN 124 PRO 125 SER 126 LYS 127 PHE 128 LEU 129 ASP 130 LEU 131 VAL 132 LYS 133 ILE 134 VAL 135 ASP 136 ASP 137 VAL 138 GLN 139 ASN 140 LEU 141 ASN 142 LYS 143 ARG 144 ALA 145 ASP 146 GLU 147 LEU 148 LYS 149 SER 150 THR 151 ASN 152 TYR 153 ASP 154 ARG 155 LEU 156 LEU 157 GLU 158 GLU 159 PHE 160 LEU 161 LYS 162 ALA 163 GLY 164 LYS 165 ILE 166
Unit 5	THR 6 LEU 7 GLN 8 PRO 9 THR 10 GLU 11 ALA 12 ALA 13 TYR 14 ILE 15 ALA 16 GLY 17 PHE 18 LEU 19 ASP 20 GLY 21 ASP 22 GLY 23 SER 24 ILE 25 TYR 26 ALA 27 ARG 28 LEU 29 ILE 30 PRO 31 ARG 32 PRO 33 ASP 34 TYR 35 LYS 36 ASP 37 ILE 38 LYS 39 TYR 40 GLN 41 VAL 42 GLU 43 LEU 44 ALA 45 ILE 46 SER 47 PHE 48 ILE 49 GLN 50 ARG 51 LYS 52 ASP 53 LYS 54 PHE 55 PRO 56 TYR 57 LEU 58 GLN 59 ASP 60 ILE 61 TYR 62 ASP 63 GLN 64 LEU 65 GLY 66 LYS 67 ARG 68 GLY 69 THR 70 LEU 71 ARG 72 LYS 73 ASP 74 ARG 75 GLY 76 ASP 77 GLY 78 ILE 79 ALA 80 ASP 81 TYR 82 THR 83 ILE 84 TRP 85 GLY 86 SER 87 THR 88 HIS 89 LEU 90 SER 91 ILE 92 ILE 93 LEU 94 PRO 95 ASP 96 LEU 97 VAL 98 PRO 99 TYR 100 LEU 101 ARG 102 ILE 103 LYS 104 LYS 105 LYS 106 GLN 107 ALA 108 ASN 109 ARG 110 ILE 111 LEU 112 HIS 113 ILE 114 ILE 115 ASN 116 LEU 117 TYR 118 PRO 119 GLN 120 ALA 121 GLN 122 LYS 123 ASN 124 PRO 125 SER 126 LYS 127 PHE 128 LEU 129 ASP 130 LEU 131 VAL 132 LYS 133 ILE 134 VAL 135 ASP 136 ASP 137 VAL 138 GLN 139 ASN 140 LEU 141 ASN 142 LYS 143 ARG 144 ALA 145 ASP 146 GLU 147 LEU 148 LYS 149 SER 150 THR 151 ASN 152 TYR 153 ASP 154 ARG 155 LEU 156 LEU 157 GLU 158 GLU 159 PHE 160 LEU 161 LYS 162 ALA 163 GLY 164 LYS 165 ILE 166
Unit 6	THR 6 LEU 7 GLN 8 PRO 9 THR 10 GLU 11 ALA 12 ALA 13 TYR 14 ILE 15 ALA 16 GLY 17 PHE 18 LEU 19 ASP 20 GLY 21 ASP 22 GLY 23 SER 24 ILE 25 TYR 26 ALA 27 ARG 28 LEU 29 ILE 30 PRO 31 ARG 32 PRO 33 ASP 34 TYR 35 LYS 36 ASP 37 ILE 38 LYS 39 TYR 40 GLN 41 VAL 42 GLU 43 LEU 44 ALA 45 ILE 46 SER 47 PHE 48 ILE 49 GLN 50 ARG 51 LYS 52 ASP 53 LYS 54 PHE 55 PRO 56 TYR 57 LEU 58 GLN 59 ASP 60 ILE 61 TYR 62 ASP 63 GLN 64 LEU 65 GLY 66 LYS 67 ARG 68 GLY 69 THR 70 LEU 71 ARG 72 LYS 73 ASP 74 ARG 75 GLY 76 ASP 77 GLY 78 ILE 79 ALA 80 ASP 81 TYR 82 THR 83 ILE 84 TRP 85 GLY 86 SER 87 THR 88 HIS 89 LEU 90 SER 91 ILE 92 ILE 93 LEU 94 PRO 95 ASP 96 LEU 97 VAL 98 PRO 99 TYR 100 LEU 101 ARG 102 ILE 103 LYS 104 LYS 105 LYS 106 GLN 107 ALA 108 ASN 109 ARG 110 ILE 111 LEU 112 HIS 113 ILE 114 ILE 115 ASN 116 LEU 117 TYR 118 PRO 119 GLN 120 ALA 121 GLN 122 LYS 123 ASN 124 PRO 125 SER 126 LYS 127 PHE 128 LEU 129 ASP 130 LEU 131 VAL 132 LYS 133 ILE 134 VAL 135 ASP 136 ASP 137 VAL 138 GLN 139 ASN 140 LEU 141 ASN 142 LYS 143 ARG 144 ALA 145 ASP 146 GLU 147 LEU 148 LYS 149 SER 150 THR 151 ASN 152 TYR 153 ASP 154 ARG 155 LEU 156 LEU 157 GLU 158 GLU 159 PHE 160 LEU 161 LYS 162 ALA 163 GLY 164 LYS 165 ILE 166

Other macromolecules

Unit 3	DG 1 DC 2 DA 3 DG 4 DA 5 DC 6 DC 7 DG 8 DT 9 DC 10 DG 11 DT 12 DG 13 DA 14 DG 15 DA 16 DC 17 DA 18 DG 19 DT 20 DT 21 DC 22 DC 23 DG 24
Unit 4	DC 1 DG 2 DG 3 DA 4 DA 5 DC 6 DT 7 DG 8 DT 9 DC 10 DT 11 DC 12 DA 13 DC 14 DG 15 DA 16 DC 17 DG 18 DG 19 DT 20 DC 21 DT 22 DG 23 DC 24
Unit 7	DG 1 DC 2 DA 3 DG 4 DA 5 DC 6 DC 7 DG 8 DT 9 DC 10 DG 11 DT 12 DG 13 DA 14 DG 15 DA 16 DC 17 DA 18 DG 19 DT 20 DT 21 DC 22 DC 23 DG 24
Unit 8	DC 1 DG 2 DG 3 DA 4 DA 5 DC 6 DT 7 DG 8 DT 9 DC 10 DT 11 DC 12 DA 13 DC 14 DG 15 DA 16 DC 17 DG 18 DG 19 DT 20 DC 21 DT 22 DG 23 DC 24

Ligands

Unit 9	CA 171 CA 172
Unit 10	CA 25
Unit 11	CA 171 CA 172
Unit 12	CA 25