3KNT - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII 8-OXOGUAN GLYCOSYLASE/LYASE IN COMPLEX WITH 15MER DNA CONTAINING 8-OX
• Keywords: PROTEIN-DNA COMPLEX, OGG, HELIX-HAIRPIN-HELIX, GLYCOSYLASE, OXOGUANINE, 8-OXOG, DNA REPAIR, DNA DAMAGE, GLYCOSIDASE, MULTIFUNCTIONAL ENZYME, NUCLEASE, HYDROLASE, LYASE-DNA COMP
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KNT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	N-GLYCOSYLASE/DNA LYASE	A	207	1753	0
2	Protein	N-GLYCOSYLASE/DNA LYASE	B	207	1753	0
3	Protein	N-GLYCOSYLASE/DNA LYASE	C	205	1737	0
4	Protein	N-GLYCOSYLASE/DNA LYASE	D	206	1745	0
5	Other macromolecule		E	15	278	23
6	Other macromolecule		F	15	309	0
7	Other macromolecule		G	13	240	23
8	Other macromolecule		H	13	267	0
9	Other macromolecule		I	14	259	23
10	Other macromolecule		J	13	267	0
11	Other macromolecule		K	15	278	23
12	Other macromolecule		L	15	309	0
13	Ligand	N-GLYCOSYLASE/DNA LYASE	A	1	0	1
14	Ligand	N-GLYCOSYLASE/DNA LYASE	B	1	0	1
15	Ligand	N-GLYCOSYLASE/DNA LYASE	C	1	0	1
16	Ligand	N-GLYCOSYLASE/DNA LYASE	D	1	0	1
17	Water			35	0	35
total				977	9195	131

Proteins

Unit 1	MET 1 MET 2 LEU 3 ILE 4 LYS 5 LYS 6 ILE 7 GLU 8 GLU 9 LEU 10 LYS 11 ASN 12 SER 13 GLU 14 ILE 15 LYS 16 ASP 17 ILE 18 ILE 19 ASP 20 LYS 21 ARG 22 ILE 23 GLN 24 GLU 25 PHE 26 LYS 27 SER 28 PHE 29 LYS 30 ASN 31 LYS 32 SER 33 ASN 34 GLU 35 GLU 36 TRP 37 PHE 38 LYS 39 GLU 40 LEU 41 CYS 42 PHE 43 CYS 44 ILE 45 LEU 46 THR 47 ALA 48 ASN 49 PHE 50 THR 51 ALA 52 GLU 53 GLY 54 GLY 55 ILE 56 ARG 57 ILE 58 GLN 59 LYS 60 GLU 61 ILE 62 GLY 63 ASP 64 GLY 65 PHE 66 LEU 67 THR 68 LEU 69 PRO 70 ARG 71 GLU 72 GLU 73 LEU 74 GLU 75 GLU 76 LYS 77 LEU 78 LYS 79 ASN 80 LEU 81 GLY 82 HIS 83 ARG 84 PHE 85 TYR 86 ARG 87 LYS 88 ARG 89 ALA 90 GLU 91 TYR 92 ILE 93 VAL 94 LEU 95 ALA 96 ARG 97 ARG 98 PHE 99 LYS 100 ASN 101 ILE 102 LYS 103 ASP 104 ILE 105 VAL 106 GLU 107 SER 108 PHE 109 GLU 110 ASN 111 GLU 112 LYS 113 VAL 114 ALA 115 ARG 116 GLU 117 PHE 118 LEU 119 VAL 120 ARG 121 ASN 122 ILE 123 LYS 124 GLY 125 ILE 126 GLY 127 TYR 128 GLN 129 GLU 130 ALA 131 SER 132 HIS 133 PHE 134 LEU 135 ARG 136 ASN 137 VAL 138 GLY 139 TYR 140 ASP 141 ASP 142 VAL 143 ALA 144 ILE 145 ILE 146 ASP 147 ARG 148 HIS 149 ILE 150 LEU 151 ARG 152 GLU 153 LEU 154 TYR 155 GLU 156 ASN 157 ASN 158 TYR 159 ILE 160 ASP 161 GLU 162 ILE 163 PRO 164 LYS 165 THR 166 LEU 167 SER 168 ARG 169 ARG 170 LYS 171 TYR 172 LEU 173 GLU 174 ILE 175 GLU 176 ASN 177 ILE 178 LEU 179 ARG 180 ASP 181 ILE 182 GLY 183 GLU 184 GLU 185 VAL 186 ASN 187 LEU 188 LYS 189 LEU 190 SER 191 GLU 192 LEU 193 ASP 194 LEU 195 TYR 196 ILE 197 TRP 198 TYR 199 LEU 200 ARG 201 THR 202 GLY 203 LYS 204 VAL 205 LEU 206 LYS 207
Unit 2	MET 1 MET 2 LEU 3 ILE 4 LYS 5 LYS 6 ILE 7 GLU 8 GLU 9 LEU 10 LYS 11 ASN 12 SER 13 GLU 14 ILE 15 LYS 16 ASP 17 ILE 18 ILE 19 ASP 20 LYS 21 ARG 22 ILE 23 GLN 24 GLU 25 PHE 26 LYS 27 SER 28 PHE 29 LYS 30 ASN 31 LYS 32 SER 33 ASN 34 GLU 35 GLU 36 TRP 37 PHE 38 LYS 39 GLU 40 LEU 41 CYS 42 PHE 43 CYS 44 ILE 45 LEU 46 THR 47 ALA 48 ASN 49 PHE 50 THR 51 ALA 52 GLU 53 GLY 54 GLY 55 ILE 56 ARG 57 ILE 58 GLN 59 LYS 60 GLU 61 ILE 62 GLY 63 ASP 64 GLY 65 PHE 66 LEU 67 THR 68 LEU 69 PRO 70 ARG 71 GLU 72 GLU 73 LEU 74 GLU 75 GLU 76 LYS 77 LEU 78 LYS 79 ASN 80 LEU 81 GLY 82 HIS 83 ARG 84 PHE 85 TYR 86 ARG 87 LYS 88 ARG 89 ALA 90 GLU 91 TYR 92 ILE 93 VAL 94 LEU 95 ALA 96 ARG 97 ARG 98 PHE 99 LYS 100 ASN 101 ILE 102 LYS 103 ASP 104 ILE 105 VAL 106 GLU 107 SER 108 PHE 109 GLU 110 ASN 111 GLU 112 LYS 113 VAL 114 ALA 115 ARG 116 GLU 117 PHE 118 LEU 119 VAL 120 ARG 121 ASN 122 ILE 123 LYS 124 GLY 125 ILE 126 GLY 127 TYR 128 GLN 129 GLU 130 ALA 131 SER 132 HIS 133 PHE 134 LEU 135 ARG 136 ASN 137 VAL 138 GLY 139 TYR 140 ASP 141 ASP 142 VAL 143 ALA 144 ILE 145 ILE 146 ASP 147 ARG 148 HIS 149 ILE 150 LEU 151 ARG 152 GLU 153 LEU 154 TYR 155 GLU 156 ASN 157 ASN 158 TYR 159 ILE 160 ASP 161 GLU 162 ILE 163 PRO 164 LYS 165 THR 166 LEU 167 SER 168 ARG 169 ARG 170 LYS 171 TYR 172 LEU 173 GLU 174 ILE 175 GLU 176 ASN 177 ILE 178 LEU 179 ARG 180 ASP 181 ILE 182 GLY 183 GLU 184 GLU 185 VAL 186 ASN 187 LEU 188 LYS 189 LEU 190 SER 191 GLU 192 LEU 193 ASP 194 LEU 195 TYR 196 ILE 197 TRP 198 TYR 199 LEU 200 ARG 201 THR 202 GLY 203 LYS 204 VAL 205 LEU 206 LYS 207
Unit 3	LEU 3 ILE 4 LYS 5 LYS 6 ILE 7 GLU 8 GLU 9 LEU 10 LYS 11 ASN 12 SER 13 GLU 14 ILE 15 LYS 16 ASP 17 ILE 18 ILE 19 ASP 20 LYS 21 ARG 22 ILE 23 GLN 24 GLU 25 PHE 26 LYS 27 SER 28 PHE 29 LYS 30 ASN 31 LYS 32 SER 33 ASN 34 GLU 35 GLU 36 TRP 37 PHE 38 LYS 39 GLU 40 LEU 41 CYS 42 PHE 43 CYS 44 ILE 45 LEU 46 THR 47 ALA 48 ASN 49 PHE 50 THR 51 ALA 52 GLU 53 GLY 54 GLY 55 ILE 56 ARG 57 ILE 58 GLN 59 LYS 60 GLU 61 ILE 62 GLY 63 ASP 64 GLY 65 PHE 66 LEU 67 THR 68 LEU 69 PRO 70 ARG 71 GLU 72 GLU 73 LEU 74 GLU 75 GLU 76 LYS 77 LEU 78 LYS 79 ASN 80 LEU 81 GLY 82 HIS 83 ARG 84 PHE 85 TYR 86 ARG 87 LYS 88 ARG 89 ALA 90 GLU 91 TYR 92 ILE 93 VAL 94 LEU 95 ALA 96 ARG 97 ARG 98 PHE 99 LYS 100 ASN 101 ILE 102 LYS 103 ASP 104 ILE 105 VAL 106 GLU 107 SER 108 PHE 109 GLU 110 ASN 111 GLU 112 LYS 113 VAL 114 ALA 115 ARG 116 GLU 117 PHE 118 LEU 119 VAL 120 ARG 121 ASN 122 ILE 123 LYS 124 GLY 125 ILE 126 GLY 127 TYR 128 GLN 129 GLU 130 ALA 131 SER 132 HIS 133 PHE 134 LEU 135 ARG 136 ASN 137 VAL 138 GLY 139 TYR 140 ASP 141 ASP 142 VAL 143 ALA 144 ILE 145 ILE 146 ASP 147 ARG 148 HIS 149 ILE 150 LEU 151 ARG 152 GLU 153 LEU 154 TYR 155 GLU 156 ASN 157 ASN 158 TYR 159 ILE 160 ASP 161 GLU 162 ILE 163 PRO 164 LYS 165 THR 166 LEU 167 SER 168 ARG 169 ARG 170 LYS 171 TYR 172 LEU 173 GLU 174 ILE 175 GLU 176 ASN 177 ILE 178 LEU 179 ARG 180 ASP 181 ILE 182 GLY 183 GLU 184 GLU 185 VAL 186 ASN 187 LEU 188 LYS 189 LEU 190 SER 191 GLU 192 LEU 193 ASP 194 LEU 195 TYR 196 ILE 197 TRP 198 TYR 199 LEU 200 ARG 201 THR 202 GLY 203 LYS 204 VAL 205 LEU 206 LYS 207
Unit 4	MET 2 LEU 3 ILE 4 LYS 5 LYS 6 ILE 7 GLU 8 GLU 9 LEU 10 LYS 11 ASN 12 SER 13 GLU 14 ILE 15 LYS 16 ASP 17 ILE 18 ILE 19 ASP 20 LYS 21 ARG 22 ILE 23 GLN 24 GLU 25 PHE 26 LYS 27 SER 28 PHE 29 LYS 30 ASN 31 LYS 32 SER 33 ASN 34 GLU 35 GLU 36 TRP 37 PHE 38 LYS 39 GLU 40 LEU 41 CYS 42 PHE 43 CYS 44 ILE 45 LEU 46 THR 47 ALA 48 ASN 49 PHE 50 THR 51 ALA 52 GLU 53 GLY 54 GLY 55 ILE 56 ARG 57 ILE 58 GLN 59 LYS 60 GLU 61 ILE 62 GLY 63 ASP 64 GLY 65 PHE 66 LEU 67 THR 68 LEU 69 PRO 70 ARG 71 GLU 72 GLU 73 LEU 74 GLU 75 GLU 76 LYS 77 LEU 78 LYS 79 ASN 80 LEU 81 GLY 82 HIS 83 ARG 84 PHE 85 TYR 86 ARG 87 LYS 88 ARG 89 ALA 90 GLU 91 TYR 92 ILE 93 VAL 94 LEU 95 ALA 96 ARG 97 ARG 98 PHE 99 LYS 100 ASN 101 ILE 102 LYS 103 ASP 104 ILE 105 VAL 106 GLU 107 SER 108 PHE 109 GLU 110 ASN 111 GLU 112 LYS 113 VAL 114 ALA 115 ARG 116 GLU 117 PHE 118 LEU 119 VAL 120 ARG 121 ASN 122 ILE 123 LYS 124 GLY 125 ILE 126 GLY 127 TYR 128 GLN 129 GLU 130 ALA 131 SER 132 HIS 133 PHE 134 LEU 135 ARG 136 ASN 137 VAL 138 GLY 139 TYR 140 ASP 141 ASP 142 VAL 143 ALA 144 ILE 145 ILE 146 ASP 147 ARG 148 HIS 149 ILE 150 LEU 151 ARG 152 GLU 153 LEU 154 TYR 155 GLU 156 ASN 157 ASN 158 TYR 159 ILE 160 ASP 161 GLU 162 ILE 163 PRO 164 LYS 165 THR 166 LEU 167 SER 168 ARG 169 ARG 170 LYS 171 TYR 172 LEU 173 GLU 174 ILE 175 GLU 176 ASN 177 ILE 178 LEU 179 ARG 180 ASP 181 ILE 182 GLY 183 GLU 184 GLU 185 VAL 186 ASN 187 LEU 188 LYS 189 LEU 190 SER 191 GLU 192 LEU 193 ASP 194 LEU 195 TYR 196 ILE 197 TRP 198 TYR 199 LEU 200 ARG 201 THR 202 GLY 203 LYS 204 VAL 205 LEU 206 LYS 207

Other macromolecules

Unit 5	DA 16 DC 17 DG 18 DT 19 DC 20 DC 21 DA 22 8OG 23 DG 24 DT 25 DC 26 DT 27 DA 28 DC 29 DC 30
Unit 6	DT 1 DG 2 DG 3 DT 4 DA 5 DG 6 DA 7 DC 8 DC 9 DT 10 DG 11 DG 12 DA 13 DC 14 DG 15
Unit 7	DA 16 DC 17 DG 18 DT 19 DC 20 DC 21 DA 22 8OG 23 DG 24 DT 25 DC 26 DT 27 DA 28
Unit 8	DG 3 DT 4 DA 5 DG 6 DA 7 DC 8 DC 9 DT 10 DG 11 DG 12 DA 13 DC 14 DG 15
Unit 9	DA 16 DC 17 DG 18 DT 19 DC 20 DC 21 DA 22 8OG 23 DG 24 DT 25 DC 26 DT 27 DA 28 DC 29
Unit 10	DG 3 DT 4 DA 5 DG 6 DA 7 DC 8 DC 9 DT 10 DG 11 DG 12 DA 13 DC 14 DG 15
Unit 11	DA 16 DC 17 DG 18 DT 19 DC 20 DC 21 DA 22 8OG 23 DG 24 DT 25 DC 26 DT 27 DA 28 DC 29 DC 30
Unit 12	DT 1 DG 2 DG 3 DT 4 DA 5 DG 6 DA 7 DC 8 DC 9 DT 10 DG 11 DG 12 DA 13 DC 14 DG 15

Ligands

Unit 13	NA 208
Unit 14	NA 208
Unit 15	NA 208
Unit 16	NA 208