3KM5 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE ANALYSIS OF THE K2 CLEAVED ADHESIN DOMAIN GINGIPAIN (KGP)
• Keywords: BETA JELLY ROLL BARREL, CLEAVED ADHESIN FAMILY, LYS-GINGIPAI HEMAGGLUTINATION DOMAIN, CELL INVASION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KM5	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	LYSINE SPECIFIC CYSTEINE PROTEASE	A	179	1336	0
2	Protein	LYSINE SPECIFIC CYSTEINE PROTEASE	B	173	1310	0
3	Ligand	LYSINE SPECIFIC CYSTEINE PROTEASE	A	4	0	11
4	Ligand	LYSINE SPECIFIC CYSTEINE PROTEASE	B	4	0	12
5	Water			304	0	304
total				664	2646	327

Proteins

Unit 1

GLY 1155 SER 1156 ALA 1157 ASP 1158 PHE 1159 THR 1160 GLU 1161 THR 1162 PHE 1163 GLU 1164 SER 1165 SER 1166 THR 1167 HIS 1168 GLY 1169 GLU 1170 ALA 1171 PRO 1172 ALA 1173 GLU 1174 TRP 1175 THR 1176 THR 1177 ILE 1178 ASP 1179 ALA 1180 ASP 1181 GLY 1182 ASP 1183 GLY 1184 GLN 1185 GLY 1186 TRP 1187 LEU 1188 CYS 1189 LEU 1190 SER 1191 SER 1192 GLY 1193 GLN 1194 LEU 1195 ASP 1196 TRP 1197 LEU 1198 THR 1199 ALA 1200 HIS 1201 GLY 1202 GLY 1203 SER 1204 ASN 1205 VAL 1206 VAL 1207 SER 1208 SER 1209 PHE 1210 SER 1211 TRP 1212 ASN 1213 GLY 1214 MET 1215 ALA 1216 LEU 1217 ASN 1218 PRO 1219 ASP 1220 ASN 1221 TYR 1222 LEU 1223 ILE 1224 SER 1225 LYS 1226 ASP 1227 VAL 1228 THR 1229 GLY 1230 ALA 1231 THR 1232 LYS 1233 VAL 1234 LYS 1235 TYR 1236 TYR 1237 TYR 1238 ALA 1239 VAL 1240 ASN 1241 ASP 1242 GLY 1243 PHE 1244 PRO 1245 GLY 1246 ASP 1247 HIS 1248 TYR 1249 ALA 1250 VAL 1251 MET 1252 ILE 1253 SER 1254 LYS 1255 THR 1256 GLY 1257 THR 1258 ASN 1259 ALA 1260 GLY 1261 ASP 1262 PHE 1263 THR 1264 VAL 1265 VAL 1266 PHE 1267 GLU 1268 GLU 1269 THR 1270 PRO 1271 ASN 1272 GLY 1273 ILE 1274 ASN 1275 LYS 1276 GLY 1277 GLY 1278 ALA 1279 ARG 1280 PHE 1281 GLY 1282 LEU 1283 SER 1284 THR 1285 GLU 1286 ALA 1287 ASN 1288 GLY 1289 ALA 1290 LYS 1291 PRO 1292 GLN 1293 SER 1294 VAL 1295 TRP 1296 ILE 1297 GLU 1298 ARG 1299 THR 1300 VAL 1301 ASP 1302 LEU 1303 PRO 1304 ALA 1305 GLY 1306 THR 1307 LYS 1308 TYR 1309 VAL 1310 ALA 1311 PHE 1312 ARG 1313 HIS 1314 TYR 1315 ASN 1316 CYS 1317 SER 1318 ASP 1319 LEU 1320 ASN 1321 TYR 1322 ILE 1323 LEU 1324 LEU 1325 ASP 1326 ASP 1327 ILE 1328 GLN 1329 PHE 1330 THR 1331 MET 1332 GLY 1333

Unit 2

ALA 1157 ASP 1158 PHE 1159 THR 1160 GLU 1161 THR 1162 PHE 1163 GLU 1164 SER 1165 SER 1166 THR 1167 HIS 1168 GLY 1169 GLU 1170 ALA 1171 PRO 1172 ALA 1173 GLU 1174 TRP 1175 THR 1176 THR 1177 ILE 1178 ASP 1179 ALA 1180 ASP 1181 GLY 1182 ASP 1183 GLY 1184 GLN 1185 GLY 1186 TRP 1187 LEU 1188 CYS 1189 LEU 1190 SER 1191 SER 1192 GLY 1193 GLN 1194 LEU 1195 ASP 1196 TRP 1197 LEU 1198 THR 1199 ALA 1200 HIS 1201 GLY 1202 GLY 1203 SER 1204 ASN 1205 VAL 1206 VAL 1207 SER 1208 SER 1209 PHE 1210 SER 1211 TRP 1212 ASN 1213 GLY 1214 MET 1215 ALA 1216 LEU 1217 ASN 1218 PRO 1219 ASP 1220 ASN 1221 TYR 1222 LEU 1223 ILE 1224 SER 1225 LYS 1226 ASP 1227 VAL 1228 THR 1229 GLY 1230 ALA 1231 THR 1232 LYS 1233 VAL 1234 LYS 1235 TYR 1236 TYR 1237 TYR 1238 ALA 1239 VAL 1240 ASN 1241 ASP 1242 GLY 1243 PHE 1244 PRO 1245 GLY 1246 ASP 1247 HIS 1248 TYR 1249 ALA 1250 VAL 1251 MET 1252 ILE 1253 SER 1254 LYS 1255 THR 1256 GLY 1257 THR 1258 ASN 1259 ALA 1260 GLY 1261 ASP 1262 PHE 1263 THR 1264 VAL 1265 VAL 1266 PHE 1267 GLU 1268 GLU 1269 THR 1270 PRO 1271 ASN 1272 GLY 1273 ILE 1274 ASN 1275 LYS 1276 GLY 1277 GLY 1278 ALA 1279 ARG 1280 PHE 1281 GLY 1282 LEU 1283 SER 1284 THR 1285 GLU 1286 ALA 1290 LYS 1291 PRO 1292 GLN 1293 SER 1294 VAL 1295 TRP 1296 ILE 1297 GLU 1298 ARG 1299 THR 1300 VAL 1301 ASP 1302 LEU 1303 PRO 1304 ALA 1305 GLY 1306 THR 1307 LYS 1308 TYR 1309 VAL 1310 ALA 1311 PHE 1312 ARG 1313 HIS 1314 TYR 1315 ASN 1316 CYS 1317 SER 1318 ASP 1319 LEU 1320 ASN 1321 TYR 1322 ILE 1323 LEU 1324 LEU 1325 ASP 1326 ASP 1327 ILE 1328 GLN 1329 PHE 1330 THR 1331 MET 1332

Ligands

Unit 3	CA 2011 CA 2012 NO3 2021 SO4 2022
Unit 4	GOL 2001 CA 2011 CA 2012 NO3 2021