3KJ4 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF RAT NOGO RECEPTOR BOUND TO 1D9 ANTAGONIST ANTIB
• Keywords: NOGO RECEPTOR ANTAGONIST ANTIBODY, LRR, CELL MEMBRANE, DISUL BOND, GLYCOPROTEIN, GPI-ANCHOR, LEUCINE-RICH REPEAT, LIPOPR MEMBRANE, RECEPTOR, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KJ4	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FAB FRAGMENT 1D9 LIGHT CHAIN	L	219	1691	0
2	Protein	FAB FRAGMENT 1D9 HEAVY CHAIN	H	219	1628	0
3	Protein	RETICULON-4 RECEPTOR	A	283	2205	0
4	Protein	FAB FRAGMENT 1D9 LIGHT CHAIN	B	219	1697	0
5	Protein	FAB FRAGMENT 1D9 HEAVY CHAIN	C	216	1621	0
6	Protein	RETICULON-4 RECEPTOR	D	283	2207	0
7	Ligand	FAB FRAGMENT 1D9 HEAVY CHAIN	H	2	0	12
8	Ligand	RETICULON-4 RECEPTOR	A	3	0	42
9	Ligand	FAB FRAGMENT 1D9 HEAVY CHAIN	C	1	0	1
10	Ligand	RETICULON-4 RECEPTOR	D	3	0	42
total				1448	11049	97

Proteins

Unit 1	ASP 1 ILE 2 VAL 3 MET 4 SER 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 ALA 12 VAL 13 SER 14 ALA 15 GLY 16 GLU 17 LYS 18 VAL 19 THR 20 MET 21 SER 22 CYS 23 LYS 24 SER 25 SER 26 GLN 27 SER 28 LEU 29 LEU 30 ASN 31 SER 32 ARG 33 ASN 34 ARG 35 LYS 36 ASN 37 TYR 38 LEU 39 ALA 40 TRP 41 TYR 42 GLN 43 GLN 44 LYS 45 PRO 46 GLY 47 GLN 48 SER 49 PRO 50 LYS 51 PRO 52 LEU 53 ILE 54 TYR 55 TRP 56 ALA 57 SER 58 THR 59 ARG 60 GLU 61 SER 62 GLY 63 VAL 64 PRO 65 ASP 66 ARG 67 PHE 68 THR 69 GLY 70 SER 71 GLY 72 SER 73 GLY 74 THR 75 ASP 76 PHE 77 THR 78 LEU 79 THR 80 ILE 81 SER 82 SER 83 VAL 84 GLN 85 ALA 86 GLU 87 ASP 88 LEU 89 ALA 90 VAL 91 TYR 92 TYR 93 CYS 94 MET 95 GLN 96 SER 97 TYR 98 ASN 99 LEU 100 PHE 101 THR 102 PHE 103 GLY 104 SER 105 GLY 106 THR 107 LYS 108 LEU 109 GLU 110 ILE 111 LYS 112 ARG 113 ALA 114 ASP 115 ALA 116 ALA 117 PRO 118 THR 119 VAL 120 SER 121 ILE 122 PHE 123 PRO 124 PRO 125 SER 126 SER 127 GLU 128 GLN 129 LEU 130 THR 131 SER 132 GLY 133 GLY 134 ALA 135 SER 136 VAL 137 VAL 138 CYS 139 PHE 140 LEU 141 ASN 142 ASN 143 PHE 144 TYR 145 PRO 146 LYS 147 ASP 148 ILE 149 ASN 150 VAL 151 LYS 152 TRP 153 LYS 154 ILE 155 ASP 156 GLY 157 SER 158 GLU 159 ARG 160 GLN 161 ASN 162 GLY 163 VAL 164 LEU 165 ASN 166 SER 167 TRP 168 THR 169 ASP 170 GLN 171 ASP 172 SER 173 LYS 174 ASP 175 SER 176 THR 177 TYR 178 SER 179 MET 180 SER 181 SER 182 THR 183 LEU 184 THR 185 LEU 186 THR 187 LYS 188 ASP 189 GLU 190 TYR 191 GLU 192 ARG 193 HIS 194 ASN 195 SER 196 TYR 197 THR 198 CYS 199 GLU 200 ALA 201 THR 202 HIS 203 LYS 204 THR 205 SER 206 THR 207 SER 208 PRO 209 ILE 210 VAL 211 LYS 212 SER 213 PHE 214 ASN 215 ARG 216 ASN 217 GLU 218 CYS 219
Unit 2	VAL 2 GLN 3 LEU 4 LYS 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 ALA 13 PRO 14 SER 15 GLN 16 SER 17 LEU 18 SER 19 ILE 20 SER 21 CYS 22 SER 23 VAL 24 SER 25 GLY 26 PHE 27 SER 28 LEU 29 SER 30 SER 31 TYR 32 GLY 33 VAL 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 SER 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 LEU 48 GLY 49 VAL 50 ILE 51 TRP 52 SER 53 GLY 54 GLY 55 ASN 56 THR 57 HIS 58 TYR 59 ASN 60 SER 61 ALA 62 LEU 63 MET 64 SER 65 ARG 66 LEU 67 SER 68 ILE 69 SER 70 LYS 71 GLU 72 ASN 73 SER 74 LYS 75 ASN 76 GLN 77 VAL 78 PHE 79 LEU 80 LYS 81 MET 82 ASN 83 SER 84 LEU 85 GLN 86 THR 87 ASP 88 ASP 89 THR 90 ALA 91 ILE 92 TYR 93 TYR 94 CYS 95 ALA 96 ARG 97 VAL 98 GLY 99 ILE 100 TYR 101 TYR 102 GLU 103 GLY 104 ALA 105 TRP 106 PHE 107 ALA 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 LEU 115 VAL 116 THR 117 VAL 118 SER 119 ALA 120 ALA 121 LYS 122 THR 123 THR 124 PRO 125 PRO 126 SER 127 VAL 128 TYR 129 PRO 130 LEU 131 ALA 132 PRO 133 GLY 134 SER 135 ALA 136 ALA 137 GLN 138 THR 139 ASN 140 SER 141 MET 142 VAL 143 THR 144 LEU 145 GLY 146 CYS 147 LEU 148 VAL 149 LYS 150 GLY 151 TYR 152 PHE 153 PRO 154 GLU 155 PRO 156 VAL 157 THR 158 VAL 159 THR 160 TRP 161 ASN 162 SER 163 GLY 164 SER 165 LEU 166 SER 167 SER 168 GLY 169 VAL 170 HIS 171 THR 172 PHE 173 PRO 174 ALA 175 VAL 176 LEU 177 GLN 178 SER 179 ASP 180 LEU 181 TYR 182 THR 183 LEU 184 SER 185 SER 186 SER 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 THR 194 TRP 195 PRO 196 SER 197 GLU 198 THR 199 VAL 200 THR 201 CYS 202 ASN 203 VAL 204 ALA 205 HIS 206 PRO 207 ALA 208 SER 209 SER 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 ILE 217 VAL 218 PRO 219 ARG 220
Unit 3	CYS 27 PRO 28 GLY 29 ALA 30 CYS 31 VAL 32 CYS 33 TYR 34 ASN 35 GLU 36 PRO 37 LYS 38 VAL 39 THR 40 THR 41 SER 42 CYS 43 PRO 44 GLN 45 GLN 46 GLY 47 LEU 48 GLN 49 ALA 50 VAL 51 PRO 52 THR 53 GLY 54 ILE 55 PRO 56 ALA 57 SER 58 SER 59 GLN 60 ARG 61 ILE 62 PHE 63 LEU 64 HIS 65 GLY 66 ASN 67 ARG 68 ILE 69 SER 70 TYR 71 VAL 72 PRO 73 ALA 74 ALA 75 SER 76 PHE 77 GLN 78 SER 79 CYS 80 ARG 81 ASN 82 LEU 83 THR 84 ILE 85 LEU 86 TRP 87 LEU 88 HIS 89 SER 90 ASN 91 ALA 92 LEU 93 ALA 94 GLY 95 ILE 96 ASP 97 ALA 98 ALA 99 ALA 100 PHE 101 THR 102 GLY 103 LEU 104 THR 105 LEU 106 LEU 107 GLU 108 GLN 109 LEU 110 ASP 111 LEU 112 SER 113 ASP 114 ASN 115 ALA 116 GLN 117 LEU 118 ARG 119 VAL 120 VAL 121 ASP 122 PRO 123 THR 124 THR 125 PHE 126 ARG 127 GLY 128 LEU 129 GLY 130 HIS 131 LEU 132 HIS 133 THR 134 LEU 135 HIS 136 LEU 137 ASP 138 ARG 139 CYS 140 GLY 141 LEU 142 GLN 143 GLU 144 LEU 145 GLY 146 PRO 147 GLY 148 LEU 149 PHE 150 ARG 151 GLY 152 LEU 153 ALA 154 ALA 155 LEU 156 GLN 157 TYR 158 LEU 159 TYR 160 LEU 161 GLN 162 ASP 163 ASN 164 ASN 165 LEU 166 GLN 167 ALA 168 LEU 169 PRO 170 ASP 171 ASN 172 THR 173 PHE 174 ARG 175 ASP 176 LEU 177 GLY 178 ASN 179 LEU 180 THR 181 HIS 182 LEU 183 PHE 184 LEU 185 HIS 186 GLY 187 ASN 188 ARG 189 ILE 190 PRO 191 SER 192 VAL 193 PRO 194 GLU 195 HIS 196 ALA 197 PHE 198 ARG 199 GLY 200 LEU 201 HIS 202 SER 203 LEU 204 ASP 205 ARG 206 LEU 207 LEU 208 LEU 209 HIS 210 GLN 211 ASN 212 HIS 213 VAL 214 ALA 215 ARG 216 VAL 217 HIS 218 PRO 219 HIS 220 ALA 221 PHE 222 ARG 223 ASP 224 LEU 225 GLY 226 ARG 227 LEU 228 MET 229 THR 230 LEU 231 TYR 232 LEU 233 PHE 234 ALA 235 ASN 236 ASN 237 LEU 238 SER 239 MET 240 LEU 241 PRO 242 ALA 243 GLU 244 VAL 245 LEU 246 VAL 247 PRO 248 LEU 249 ARG 250 SER 251 LEU 252 GLN 253 TYR 254 LEU 255 ARG 256 LEU 257 ASN 258 ASP 259 ASN 260 PRO 261 TRP 262 VAL 263 CYS 264 ASP 265 CYS 266 ARG 267 ALA 268 ARG 269 PRO 270 LEU 271 TRP 272 ALA 273 TRP 274 LEU 275 GLN 276 LYS 277 PHE 278 ARG 279 GLY 280 SER 281 SER 282 SER 283 GLU 284 VAL 285 PRO 286 CYS 287 ASN 288 LEU 289 PRO 290 GLN 291 ARG 292 LEU 293 ALA 294 GLY 295 ARG 296 ASP 297 LEU 298 LYS 299 ARG 300 LEU 301 ALA 302 ALA 303 SER 304 ASP 305 LEU 306 GLU 307 GLY 308 CYS 309
Unit 4	ASP 1 ILE 2 VAL 3 MET 4 SER 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 ALA 12 VAL 13 SER 14 ALA 15 GLY 16 GLU 17 LYS 18 VAL 19 THR 20 MET 21 SER 22 CYS 23 LYS 24 SER 25 SER 26 GLN 27 SER 28 LEU 29 LEU 30 ASN 31 SER 32 ARG 33 ASN 34 ARG 35 LYS 36 ASN 37 TYR 38 LEU 39 ALA 40 TRP 41 TYR 42 GLN 43 GLN 44 LYS 45 PRO 46 GLY 47 GLN 48 SER 49 PRO 50 LYS 51 PRO 52 LEU 53 ILE 54 TYR 55 TRP 56 ALA 57 SER 58 THR 59 ARG 60 GLU 61 SER 62 GLY 63 VAL 64 PRO 65 ASP 66 ARG 67 PHE 68 THR 69 GLY 70 SER 71 GLY 72 SER 73 GLY 74 THR 75 ASP 76 PHE 77 THR 78 LEU 79 THR 80 ILE 81 SER 82 SER 83 VAL 84 GLN 85 ALA 86 GLU 87 ASP 88 LEU 89 ALA 90 VAL 91 TYR 92 TYR 93 CYS 94 MET 95 GLN 96 SER 97 TYR 98 ASN 99 LEU 100 PHE 101 THR 102 PHE 103 GLY 104 SER 105 GLY 106 THR 107 LYS 108 LEU 109 GLU 110 ILE 111 LYS 112 ARG 113 ALA 114 ASP 115 ALA 116 ALA 117 PRO 118 THR 119 VAL 120 SER 121 ILE 122 PHE 123 PRO 124 PRO 125 SER 126 SER 127 GLU 128 GLN 129 LEU 130 THR 131 SER 132 GLY 133 GLY 134 ALA 135 SER 136 VAL 137 VAL 138 CYS 139 PHE 140 LEU 141 ASN 142 ASN 143 PHE 144 TYR 145 PRO 146 LYS 147 ASP 148 ILE 149 ASN 150 VAL 151 LYS 152 TRP 153 LYS 154 ILE 155 ASP 156 GLY 157 SER 158 GLU 159 ARG 160 GLN 161 ASN 162 GLY 163 VAL 164 LEU 165 ASN 166 SER 167 TRP 168 THR 169 ASP 170 GLN 171 ASP 172 SER 173 LYS 174 ASP 175 SER 176 THR 177 TYR 178 SER 179 MET 180 SER 181 SER 182 THR 183 LEU 184 THR 185 LEU 186 THR 187 LYS 188 ASP 189 GLU 190 TYR 191 GLU 192 ARG 193 HIS 194 ASN 195 SER 196 TYR 197 THR 198 CYS 199 GLU 200 ALA 201 THR 202 HIS 203 LYS 204 THR 205 SER 206 THR 207 SER 208 PRO 209 ILE 210 VAL 211 LYS 212 SER 213 PHE 214 ASN 215 ARG 216 ASN 217 GLU 218 CYS 219
Unit 5	GLN 1 VAL 2 GLN 3 LEU 4 LYS 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 ALA 13 PRO 14 SER 15 GLN 16 SER 17 LEU 18 SER 19 ILE 20 SER 21 CYS 22 SER 23 VAL 24 SER 25 GLY 26 PHE 27 SER 28 LEU 29 SER 30 SER 31 TYR 32 GLY 33 VAL 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 SER 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 LEU 48 GLY 49 VAL 50 ILE 51 TRP 52 SER 53 GLY 54 GLY 55 ASN 56 THR 57 HIS 58 TYR 59 ASN 60 SER 61 ALA 62 LEU 63 MET 64 SER 65 ARG 66 LEU 67 SER 68 ILE 69 SER 70 LYS 71 GLU 72 ASN 73 SER 74 LYS 75 ASN 76 GLN 77 VAL 78 PHE 79 LEU 80 LYS 81 MET 82 ASN 83 SER 84 LEU 85 GLN 86 THR 87 ASP 88 ASP 89 THR 90 ALA 91 ILE 92 TYR 93 TYR 94 CYS 95 ALA 96 ARG 97 TYR 102 GLU 103 GLY 104 ALA 105 TRP 106 PHE 107 ALA 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 LEU 115 VAL 116 THR 117 VAL 118 SER 119 ALA 120 ALA 121 LYS 122 THR 123 THR 124 PRO 125 PRO 126 SER 127 VAL 128 TYR 129 PRO 130 LEU 131 ALA 132 PRO 133 GLY 134 SER 135 ALA 136 ALA 137 GLN 138 THR 139 ASN 140 SER 141 MET 142 VAL 143 THR 144 LEU 145 GLY 146 CYS 147 LEU 148 VAL 149 LYS 150 GLY 151 TYR 152 PHE 153 PRO 154 GLU 155 PRO 156 VAL 157 THR 158 VAL 159 THR 160 TRP 161 ASN 162 SER 163 GLY 164 SER 165 LEU 166 SER 167 SER 168 GLY 169 VAL 170 HIS 171 THR 172 PHE 173 PRO 174 ALA 175 VAL 176 LEU 177 GLN 178 SER 179 ASP 180 LEU 181 TYR 182 THR 183 LEU 184 SER 185 SER 186 SER 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 THR 194 TRP 195 PRO 196 SER 197 GLU 198 THR 199 VAL 200 THR 201 CYS 202 ASN 203 VAL 204 ALA 205 HIS 206 PRO 207 ALA 208 SER 209 SER 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 ILE 217 VAL 218 PRO 219 ARG 220
Unit 6	CYS 27 PRO 28 GLY 29 ALA 30 CYS 31 VAL 32 CYS 33 TYR 34 ASN 35 GLU 36 PRO 37 LYS 38 VAL 39 THR 40 THR 41 SER 42 CYS 43 PRO 44 GLN 45 GLN 46 GLY 47 LEU 48 GLN 49 ALA 50 VAL 51 PRO 52 THR 53 GLY 54 ILE 55 PRO 56 ALA 57 SER 58 SER 59 GLN 60 ARG 61 ILE 62 PHE 63 LEU 64 HIS 65 GLY 66 ASN 67 ARG 68 ILE 69 SER 70 TYR 71 VAL 72 PRO 73 ALA 74 ALA 75 SER 76 PHE 77 GLN 78 SER 79 CYS 80 ARG 81 ASN 82 LEU 83 THR 84 ILE 85 LEU 86 TRP 87 LEU 88 HIS 89 SER 90 ASN 91 ALA 92 LEU 93 ALA 94 GLY 95 ILE 96 ASP 97 ALA 98 ALA 99 ALA 100 PHE 101 THR 102 GLY 103 LEU 104 THR 105 LEU 106 LEU 107 GLU 108 GLN 109 LEU 110 ASP 111 LEU 112 SER 113 ASP 114 ASN 115 ALA 116 GLN 117 LEU 118 ARG 119 VAL 120 VAL 121 ASP 122 PRO 123 THR 124 THR 125 PHE 126 ARG 127 GLY 128 LEU 129 GLY 130 HIS 131 LEU 132 HIS 133 THR 134 LEU 135 HIS 136 LEU 137 ASP 138 ARG 139 CYS 140 GLY 141 LEU 142 GLN 143 GLU 144 LEU 145 GLY 146 PRO 147 GLY 148 LEU 149 PHE 150 ARG 151 GLY 152 LEU 153 ALA 154 ALA 155 LEU 156 GLN 157 TYR 158 LEU 159 TYR 160 LEU 161 GLN 162 ASP 163 ASN 164 ASN 165 LEU 166 GLN 167 ALA 168 LEU 169 PRO 170 ASP 171 ASN 172 THR 173 PHE 174 ARG 175 ASP 176 LEU 177 GLY 178 ASN 179 LEU 180 THR 181 HIS 182 LEU 183 PHE 184 LEU 185 HIS 186 GLY 187 ASN 188 ARG 189 ILE 190 PRO 191 SER 192 VAL 193 PRO 194 GLU 195 HIS 196 ALA 197 PHE 198 ARG 199 GLY 200 LEU 201 HIS 202 SER 203 LEU 204 ASP 205 ARG 206 LEU 207 LEU 208 LEU 209 HIS 210 GLN 211 ASN 212 HIS 213 VAL 214 ALA 215 ARG 216 VAL 217 HIS 218 PRO 219 HIS 220 ALA 221 PHE 222 ARG 223 ASP 224 LEU 225 GLY 226 ARG 227 LEU 228 MET 229 THR 230 LEU 231 TYR 232 LEU 233 PHE 234 ALA 235 ASN 236 ASN 237 LEU 238 SER 239 MET 240 LEU 241 PRO 242 ALA 243 GLU 244 VAL 245 LEU 246 VAL 247 PRO 248 LEU 249 ARG 250 SER 251 LEU 252 GLN 253 TYR 254 LEU 255 ARG 256 LEU 257 ASN 258 ASP 259 ASN 260 PRO 261 TRP 262 VAL 263 CYS 264 ASP 265 CYS 266 ARG 267 ALA 268 ARG 269 PRO 270 LEU 271 TRP 272 ALA 273 TRP 274 LEU 275 GLN 276 LYS 277 PHE 278 ARG 279 GLY 280 SER 281 SER 282 SER 283 GLU 284 VAL 285 PRO 286 CYS 287 ASN 288 LEU 289 PRO 290 GLN 291 ARG 292 LEU 293 ALA 294 GLY 295 ARG 296 ASP 297 LEU 298 LYS 299 ARG 300 LEU 301 ALA 302 ALA 303 SER 304 ASP 305 LEU 306 GLU 307 GLY 308 CYS 309

Ligands

Unit 7	ZN 221 MAN 303
Unit 8	NDG 313 NDG 314 NAG 315
Unit 9	ZN 221
Unit 10	NDG 401 NDG 402 NAG 405