3KD4 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A PUTATIVE PROTEASE (BDI_1141) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.00 A RESOLUTION
• Keywords: PUTATIVE PROTEASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STR GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROL
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KD4	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PUTATIVE PROTEASE	A	505	3784	64
2	Protein	PUTATIVE PROTEASE	B	505	3784	64
3	Ligand	PUTATIVE PROTEASE	A	15	0	87
4	Ligand	PUTATIVE PROTEASE	B	12	0	69
5	Water			1095	0	1095
total				2132	7568	1379

Proteins

Unit 1

ALA 23 ALA 24 SER 25 GLU 26 ALA 27 GLU 28 TYR 29 GLY 30 LYS 31 VAL 32 SER 33 LYS 34 ALA 35 TRP 36 THR 37 LEU 38 HIS 39 ALA 40 ASP 41 GLY 42 SER 43 GLN 44 GLU 45 TYR 46 ARG 47 SER 48 SER 49 MSE 50 GLU 51 LEU 52 THR 53 LEU 54 PHE 55 THR 56 HIS 57 THR 58 ALA 59 MSE 60 ASN 61 SER 62 THR 63 TYR 64 GLY 65 GLU 66 SER 67 PHE 68 ILE 69 VAL 70 TYR 71 ASN 72 PRO 73 ASP 74 PHE 75 GLN 76 THR 77 LEU 78 LYS 79 ILE 80 HIS 81 SER 82 SER 83 TYR 84 THR 85 ARG 86 GLN 87 LYS 88 ASP 89 GLY 90 THR 91 ILE 92 VAL 93 LYS 94 THR 95 PRO 96 ASP 97 ASN 98 ALA 99 PHE 100 VAL 101 GLU 102 VAL 103 LEU 104 PRO 105 ARG 106 PHE 107 ALA 108 ALA 109 ASP 110 ALA 111 PRO 112 ALA 113 TYR 114 ASN 115 GLN 116 LEU 117 LYS 118 GLU 119 MSE 120 VAL 121 VAL 122 VAL 123 HIS 124 THR 125 GLY 126 LEU 127 GLU 128 LEU 129 GLY 130 ALA 131 THR 132 ILE 133 TYR 134 LEU 135 ASP 136 TYR 137 SER 138 ILE 139 ILE 140 THR 141 LYS 142 PRO 143 GLY 144 TYR 145 TYR 146 PRO 147 ALA 148 LEU 149 ASP 150 ILE 151 ASN 152 GLU 153 ARG 154 LEU 155 GLN 156 GLU 157 THR 158 SER 159 PRO 160 VAL 161 LYS 162 GLU 163 CYS 164 LYS 165 VAL 166 SER 167 ILE 168 SER 169 VAL 170 PRO 171 GLU 172 GLY 173 THR 174 PRO 175 LEU 176 ALA 177 CYS 178 GLY 179 LEU 180 TYR 181 GLY 182 SER 183 PRO 184 VAL 185 LYS 186 ALA 187 VAL 188 GLU 189 GLU 190 SER 191 HIS 192 ASP 193 GLY 194 ILE 195 LYS 196 GLU 197 VAL 198 HIS 199 TRP 200 THR 201 LEU 202 ARG 203 ASN 204 ILE 205 PRO 206 ALA 207 SER 208 SER 209 ARG 210 GLU 211 ALA 212 PHE 213 GLN 214 PRO 215 LYS 216 ASN 217 ARG 218 GLU 219 ALA 220 SER 221 PRO 222 HIS 223 LEU 224 VAL 225 ALA 226 SER 227 THR 228 TYR 229 PRO 230 SER 231 GLY 232 LYS 233 ALA 234 ALA 235 LEU 236 ALA 237 THR 238 LEU 239 ASP 240 LYS 241 ARG 242 LEU 243 LYS 244 GLU 245 SER 246 GLN 247 GLY 248 TYR 249 GLU 250 SER 251 LYS 252 THR 253 PHE 254 ALA 255 GLN 256 PHE 257 LEU 258 THR 259 ASP 260 LYS 261 SER 262 GLY 263 ASN 264 GLU 265 GLN 266 GLU 267 LYS 268 VAL 269 ASN 270 ILE 271 ILE 272 ARG 273 ASP 274 HIS 275 ILE 276 LEU 277 ASN 278 ASN 279 LEU 280 SER 281 THR 282 CYS 283 PRO 284 ILE 285 PRO 286 MSE 287 ALA 288 MSE 289 THR 290 GLY 291 TYR 292 THR 293 VAL 294 ARG 295 ASP 296 ILE 297 ASP 298 THR 299 VAL 300 LEU 301 ARG 302 SER 303 ALA 304 TYR 305 GLY 306 THR 307 PRO 308 LEU 309 GLU 310 ILE 311 ALA 312 GLN 313 LEU 314 LEU 315 ASN 316 VAL 317 MSE 318 LEU 319 ASN 320 ALA 321 ALA 322 GLY 323 ILE 324 PRO 325 SER 326 GLU 327 VAL 328 LEU 329 ALA 330 VAL 331 TYR 332 PRO 333 GLY 334 HIS 335 LEU 336 ASP 337 THR 338 ASP 339 ALA 340 CYS 341 GLY 342 LEU 343 ALA 344 ALA 345 ILE 346 GLN 347 THR 348 LEU 349 ALA 350 VAL 351 LYS 352 ALA 353 THR 354 VAL 355 ASP 356 GLY 357 LYS 358 ASP 359 GLN 360 TYR 361 LEU 362 SER 363 ALA 364 SER 365 PRO 366 LEU 367 THR 368 ASN 369 ARG 370 GLY 371 GLY 372 LEU 373 ASP 374 LYS 375 VAL 376 VAL 377 SER 378 LEU 379 SER 380 GLY 381 THR 382 SER 383 ILE 384 GLU 385 ILE 386 GLU 387 THR 388 THR 389 PRO 390 ILE 391 GLN 392 ILE 393 LYS 394 GLU 395 SER 396 ARG 397 SER 398 VAL 399 ALA 400 ILE 401 SER 402 ALA 403 ASP 404 GLN 405 ALA 406 LYS 407 ASP 408 GLY 409 PHE 410 ALA 411 ILE 412 CYS 413 VAL 414 LEU 415 PRO 416 ALA 417 ILE 418 SER 419 ALA 420 GLY 421 ILE 422 ASP 423 SER 424 TRP 425 GLY 426 MSE 427 SER 428 ALA 429 LEU 430 ASN 431 SER 432 LYS 433 ARG 434 SER 435 ASN 436 LEU 437 PHE 438 GLU 439 LEU 440 PRO 441 SER 442 LEU 443 ILE 444 ARG 445 GLU 446 GLU 447 VAL 448 THR 449 TYR 450 THR 451 VAL 452 THR 453 PRO 454 ALA 455 GLU 456 GLY 457 MSE 458 LYS 459 LEU 460 GLN 461 THR 462 SER 463 THR 464 GLN 465 GLU 466 GLN 467 VAL 468 ILE 469 SER 470 LYS 471 PRO 472 PHE 473 GLY 474 LYS 475 VAL 476 THR 477 ARG 478 THR 479 ILE 480 THR 481 PRO 482 ARG 483 GLY 484 ASN 485 THR 486 ILE 487 GLU 488 VAL 489 VAL 490 ARG 491 THR 492 ILE 493 GLU 494 LEU 495 ASN 496 LYS 497 GLN 498 GLN 499 PHE 500 THR 501 PRO 502 ALA 503 GLU 504 TYR 505 SER 506 ASP 507 VAL 508 ARG 509 SER 510 LEU 511 ILE 512 HIS 513 GLU 514 TRP 515 THR 516 ASN 517 PRO 518 ASP 519 ASN 520 ARG 521 VAL 522 LEU 523 LEU 524 PHE 525 SER 526 LEU 527

Unit 2

ALA 23 ALA 24 SER 25 GLU 26 ALA 27 GLU 28 TYR 29 GLY 30 LYS 31 VAL 32 SER 33 LYS 34 ALA 35 TRP 36 THR 37 LEU 38 HIS 39 ALA 40 ASP 41 GLY 42 SER 43 GLN 44 GLU 45 TYR 46 ARG 47 SER 48 SER 49 MSE 50 GLU 51 LEU 52 THR 53 LEU 54 PHE 55 THR 56 HIS 57 THR 58 ALA 59 MSE 60 ASN 61 SER 62 THR 63 TYR 64 GLY 65 GLU 66 SER 67 PHE 68 ILE 69 VAL 70 TYR 71 ASN 72 PRO 73 ASP 74 PHE 75 GLN 76 THR 77 LEU 78 LYS 79 ILE 80 HIS 81 SER 82 SER 83 TYR 84 THR 85 ARG 86 GLN 87 LYS 88 ASP 89 GLY 90 THR 91 ILE 92 VAL 93 LYS 94 THR 95 PRO 96 ASP 97 ASN 98 ALA 99 PHE 100 VAL 101 GLU 102 VAL 103 LEU 104 PRO 105 ARG 106 PHE 107 ALA 108 ALA 109 ASP 110 ALA 111 PRO 112 ALA 113 TYR 114 ASN 115 GLN 116 LEU 117 LYS 118 GLU 119 MSE 120 VAL 121 VAL 122 VAL 123 HIS 124 THR 125 GLY 126 LEU 127 GLU 128 LEU 129 GLY 130 ALA 131 THR 132 ILE 133 TYR 134 LEU 135 ASP 136 TYR 137 SER 138 ILE 139 ILE 140 THR 141 LYS 142 PRO 143 GLY 144 TYR 145 TYR 146 PRO 147 ALA 148 LEU 149 ASP 150 ILE 151 ASN 152 GLU 153 ARG 154 LEU 155 GLN 156 GLU 157 THR 158 SER 159 PRO 160 VAL 161 LYS 162 GLU 163 CYS 164 LYS 165 VAL 166 SER 167 ILE 168 SER 169 VAL 170 PRO 171 GLU 172 GLY 173 THR 174 PRO 175 LEU 176 ALA 177 CYS 178 GLY 179 LEU 180 TYR 181 GLY 182 SER 183 PRO 184 VAL 185 LYS 186 ALA 187 VAL 188 GLU 189 GLU 190 SER 191 HIS 192 ASP 193 GLY 194 ILE 195 LYS 196 GLU 197 VAL 198 HIS 199 TRP 200 THR 201 LEU 202 ARG 203 ASN 204 ILE 205 PRO 206 ALA 207 SER 208 SER 209 ARG 210 GLU 211 ALA 212 PHE 213 GLN 214 PRO 215 LYS 216 ASN 217 ARG 218 GLU 219 ALA 220 SER 221 PRO 222 HIS 223 LEU 224 VAL 225 ALA 226 SER 227 THR 228 TYR 229 PRO 230 SER 231 GLY 232 LYS 233 ALA 234 ALA 235 LEU 236 ALA 237 THR 238 LEU 239 ASP 240 LYS 241 ARG 242 LEU 243 LYS 244 GLU 245 SER 246 GLN 247 GLY 248 TYR 249 GLU 250 SER 251 LYS 252 THR 253 PHE 254 ALA 255 GLN 256 PHE 257 LEU 258 THR 259 ASP 260 LYS 261 SER 262 GLY 263 ASN 264 GLU 265 GLN 266 GLU 267 LYS 268 VAL 269 ASN 270 ILE 271 ILE 272 ARG 273 ASP 274 HIS 275 ILE 276 LEU 277 ASN 278 ASN 279 LEU 280 SER 281 THR 282 CYS 283 PRO 284 ILE 285 PRO 286 MSE 287 ALA 288 MSE 289 THR 290 GLY 291 TYR 292 THR 293 VAL 294 ARG 295 ASP 296 ILE 297 ASP 298 THR 299 VAL 300 LEU 301 ARG 302 SER 303 ALA 304 TYR 305 GLY 306 THR 307 PRO 308 LEU 309 GLU 310 ILE 311 ALA 312 GLN 313 LEU 314 LEU 315 ASN 316 VAL 317 MSE 318 LEU 319 ASN 320 ALA 321 ALA 322 GLY 323 ILE 324 PRO 325 SER 326 GLU 327 VAL 328 LEU 329 ALA 330 VAL 331 TYR 332 PRO 333 GLY 334 HIS 335 LEU 336 ASP 337 THR 338 ASP 339 ALA 340 CYS 341 GLY 342 LEU 343 ALA 344 ALA 345 ILE 346 GLN 347 THR 348 LEU 349 ALA 350 VAL 351 LYS 352 ALA 353 THR 354 VAL 355 ASP 356 GLY 357 LYS 358 ASP 359 GLN 360 TYR 361 LEU 362 SER 363 ALA 364 SER 365 PRO 366 LEU 367 THR 368 ASN 369 ARG 370 GLY 371 GLY 372 LEU 373 ASP 374 LYS 375 VAL 376 VAL 377 SER 378 LEU 379 SER 380 GLY 381 THR 382 SER 383 ILE 384 GLU 385 ILE 386 GLU 387 THR 388 THR 389 PRO 390 ILE 391 GLN 392 ILE 393 LYS 394 GLU 395 SER 396 ARG 397 SER 398 VAL 399 ALA 400 ILE 401 SER 402 ALA 403 ASP 404 GLN 405 ALA 406 LYS 407 ASP 408 GLY 409 PHE 410 ALA 411 ILE 412 CYS 413 VAL 414 LEU 415 PRO 416 ALA 417 ILE 418 SER 419 ALA 420 GLY 421 ILE 422 ASP 423 SER 424 TRP 425 GLY 426 MSE 427 SER 428 ALA 429 LEU 430 ASN 431 SER 432 LYS 433 ARG 434 SER 435 ASN 436 LEU 437 PHE 438 GLU 439 LEU 440 PRO 441 SER 442 LEU 443 ILE 444 ARG 445 GLU 446 GLU 447 VAL 448 THR 449 TYR 450 THR 451 VAL 452 THR 453 PRO 454 ALA 455 GLU 456 GLY 457 MSE 458 LYS 459 LEU 460 GLN 461 THR 462 SER 463 THR 464 GLN 465 GLU 466 GLN 467 VAL 468 ILE 469 SER 470 LYS 471 PRO 472 PHE 473 GLY 474 LYS 475 VAL 476 THR 477 ARG 478 THR 479 ILE 480 THR 481 PRO 482 ARG 483 GLY 484 ASN 485 THR 486 ILE 487 GLU 488 VAL 489 VAL 490 ARG 491 THR 492 ILE 493 GLU 494 LEU 495 ASN 496 LYS 497 GLN 498 GLN 499 PHE 500 THR 501 PRO 502 ALA 503 GLU 504 TYR 505 SER 506 ASP 507 VAL 508 ARG 509 SER 510 LEU 511 ILE 512 HIS 513 GLU 514 TRP 515 THR 516 ASN 517 PRO 518 ASP 519 ASN 520 ARG 521 VAL 522 LEU 523 LEU 524 PHE 525 SER 526 LEU 527

Ligands

Unit 3	PO4 2 PO4 3 PO4 5 GOL 7 GOL 8 GOL 9 GOL 10 GOL 15 GOL 18 GOL 19 GOL 21 GOL 528 GOL 529 GOL 530 GOL 531
Unit 4	PO4 1 PO4 4 PO4 6 GOL 11 GOL 12 GOL 13 GOL 14 GOL 16 GOL 17 GOL 20 GOL 528 GOL 529