3KB6 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF D-LACTATE DEHYDROGENASE FROM AQUIFEX AE COMPLEXED WITH NAD AND LACTIC ACID
• Keywords: OXIDOREDUCTASE, D-LDH, NAD, STRUCTURAL GENOMICS, NPPSFA, NAT PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKE STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3KB6	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	D-LACTATE DEHYDROGENASE	A	333	2620	48
2	Protein	D-LACTATE DEHYDROGENASE	B	334	2620	56
3	Protein	D-LACTATE DEHYDROGENASE	C	334	2620	56
4	Protein	D-LACTATE DEHYDROGENASE	D	334	2621	56
5	Ligand	D-LACTATE DEHYDROGENASE	A	17	0	164
6	Ligand	D-LACTATE DEHYDROGENASE	B	11	0	123
7	Ligand	D-LACTATE DEHYDROGENASE	C	8	0	91
8	Ligand	D-LACTATE DEHYDROGENASE	D	6	0	74
9	Water			853	0	853
total				2230	10481	1521

Proteins

Unit 1	ASN 2 VAL 3 LEU 4 PHE 5 THR 6 SER 7 VAL 8 PRO 9 GLN 10 GLU 11 ASP 12 VAL 13 PRO 14 PHE 15 TYR 16 GLN 17 GLU 18 ALA 19 LEU 20 LYS 21 ASP 22 LEU 23 SER 24 LEU 25 LYS 26 ILE 27 TYR 28 THR 29 THR 30 ASP 31 VAL 32 SER 33 LYS 34 VAL 35 PRO 36 GLU 37 ASN 38 GLU 39 LEU 40 LYS 41 LYS 42 ALA 43 GLU 44 LEU 45 ILE 46 SER 47 VAL 48 PHE 49 VAL 50 TYR 51 ASP 52 LYS 53 LEU 54 THR 55 GLU 56 GLU 57 LEU 58 LEU 59 SER 60 LYS 61 MSE 62 PRO 63 ARG 64 LEU 65 LYS 66 LEU 67 ILE 68 HIS 69 THR 70 ARG 71 SER 72 VAL 73 GLY 74 PHE 75 ASP 76 HIS 77 ILE 78 ASP 79 LEU 80 ASP 81 TYR 82 CYS 83 LYS 84 LYS 85 LYS 86 GLY 87 ILE 88 LEU 89 VAL 90 THR 91 HIS 92 ILE 93 PRO 94 ALA 95 TYR 96 SER 97 PRO 98 GLU 99 SER 100 VAL 101 ALA 102 GLU 103 HIS 104 THR 105 PHE 106 ALA 107 MSE 108 ILE 109 LEU 110 THR 111 LEU 112 VAL 113 LYS 114 ARG 115 LEU 116 LYS 117 ARG 118 ILE 119 GLU 120 ASP 121 ARG 122 VAL 123 LYS 124 LYS 125 LEU 126 ASN 127 PHE 128 SER 129 GLN 130 ASP 131 SER 132 GLU 133 ILE 134 LEU 135 ALA 136 ARG 137 GLU 138 LEU 139 ASN 140 ARG 141 LEU 142 THR 143 LEU 144 GLY 145 VAL 146 ILE 147 GLY 148 THR 149 GLY 150 ARG 151 ILE 152 GLY 153 SER 154 ARG 155 VAL 156 ALA 157 MSE 158 TYR 159 GLY 160 LEU 161 ALA 162 PHE 163 GLY 164 MSE 165 LYS 166 VAL 167 LEU 168 CYS 169 TYR 170 ASP 171 VAL 172 VAL 173 LYS 174 ARG 175 GLU 176 ASP 177 LEU 178 LYS 179 GLU 180 LYS 181 GLY 182 CYS 183 VAL 184 TYR 185 THR 186 SER 187 LEU 188 ASP 189 GLU 190 LEU 191 LEU 192 LYS 193 GLU 194 SER 195 ASP 196 VAL 197 ILE 198 SER 199 LEU 200 HIS 201 VAL 202 PRO 203 TYR 204 THR 205 LYS 206 GLU 207 THR 208 HIS 209 HIS 210 MSE 211 ILE 212 ASN 213 GLU 214 GLU 215 ARG 216 ILE 217 SER 218 LEU 219 MSE 220 LYS 221 ASP 222 GLY 223 VAL 224 TYR 225 LEU 226 ILE 227 ASN 228 THR 229 ALA 230 ARG 231 GLY 232 LYS 233 VAL 234 VAL 235 ASP 236 THR 237 ASP 238 ALA 239 LEU 240 TYR 241 ARG 242 ALA 243 TYR 244 GLN 245 ARG 246 GLY 247 LYS 248 PHE 249 SER 250 GLY 251 LEU 252 GLY 253 LEU 254 ASP 255 VAL 256 PHE 257 GLU 258 ASP 259 GLU 260 GLU 261 ILE 262 LEU 263 ILE 264 LEU 265 LYS 266 LYS 267 TYR 268 THR 269 GLU 270 GLY 271 LYS 272 ALA 273 THR 274 ASP 275 LYS 276 ASN 277 LEU 278 LYS 279 ILE 280 LEU 281 GLU 282 LEU 283 ALA 284 CYS 285 LYS 286 ASP 287 ASN 288 VAL 289 ILE 290 ILE 291 THR 292 PRO 293 HIS 294 ILE 295 ALA 296 TYR 297 TYR 298 THR 299 ASP 300 LYS 301 SER 302 LEU 303 GLU 304 ARG 305 ILE 306 ARG 307 GLU 308 GLU 309 THR 310 VAL 311 LYS 312 VAL 313 VAL 314 LYS 315 ALA 316 PHE 317 VAL 318 LYS 319 GLY 320 ASP 321 LEU 322 GLU 323 GLN 324 ILE 325 LYS 326 GLY 327 ASN 328 PHE 329 VAL 330 VAL 331 GLY 332 PRO 333 SER 334
Unit 2	MSE 1 ASN 2 VAL 3 LEU 4 PHE 5 THR 6 SER 7 VAL 8 PRO 9 GLN 10 GLU 11 ASP 12 VAL 13 PRO 14 PHE 15 TYR 16 GLN 17 GLU 18 ALA 19 LEU 20 LYS 21 ASP 22 LEU 23 SER 24 LEU 25 LYS 26 ILE 27 TYR 28 THR 29 THR 30 ASP 31 VAL 32 SER 33 LYS 34 VAL 35 PRO 36 GLU 37 ASN 38 GLU 39 LEU 40 LYS 41 LYS 42 ALA 43 GLU 44 LEU 45 ILE 46 SER 47 VAL 48 PHE 49 VAL 50 TYR 51 ASP 52 LYS 53 LEU 54 THR 55 GLU 56 GLU 57 LEU 58 LEU 59 SER 60 LYS 61 MSE 62 PRO 63 ARG 64 LEU 65 LYS 66 LEU 67 ILE 68 HIS 69 THR 70 ARG 71 SER 72 VAL 73 GLY 74 PHE 75 ASP 76 HIS 77 ILE 78 ASP 79 LEU 80 ASP 81 TYR 82 CYS 83 LYS 84 LYS 85 LYS 86 GLY 87 ILE 88 LEU 89 VAL 90 THR 91 HIS 92 ILE 93 PRO 94 ALA 95 TYR 96 SER 97 PRO 98 GLU 99 SER 100 VAL 101 ALA 102 GLU 103 HIS 104 THR 105 PHE 106 ALA 107 MSE 108 ILE 109 LEU 110 THR 111 LEU 112 VAL 113 LYS 114 ARG 115 LEU 116 LYS 117 ARG 118 ILE 119 GLU 120 ASP 121 ARG 122 VAL 123 LYS 124 LYS 125 LEU 126 ASN 127 PHE 128 SER 129 GLN 130 ASP 131 SER 132 GLU 133 ILE 134 LEU 135 ALA 136 ARG 137 GLU 138 LEU 139 ASN 140 ARG 141 LEU 142 THR 143 LEU 144 GLY 145 VAL 146 ILE 147 GLY 148 THR 149 GLY 150 ARG 151 ILE 152 GLY 153 SER 154 ARG 155 VAL 156 ALA 157 MSE 158 TYR 159 GLY 160 LEU 161 ALA 162 PHE 163 GLY 164 MSE 165 LYS 166 VAL 167 LEU 168 CYS 169 TYR 170 ASP 171 VAL 172 VAL 173 LYS 174 ARG 175 GLU 176 ASP 177 LEU 178 LYS 179 GLU 180 LYS 181 GLY 182 CYS 183 VAL 184 TYR 185 THR 186 SER 187 LEU 188 ASP 189 GLU 190 LEU 191 LEU 192 LYS 193 GLU 194 SER 195 ASP 196 VAL 197 ILE 198 SER 199 LEU 200 HIS 201 VAL 202 PRO 203 TYR 204 THR 205 LYS 206 GLU 207 THR 208 HIS 209 HIS 210 MSE 211 ILE 212 ASN 213 GLU 214 GLU 215 ARG 216 ILE 217 SER 218 LEU 219 MSE 220 LYS 221 ASP 222 GLY 223 VAL 224 TYR 225 LEU 226 ILE 227 ASN 228 THR 229 ALA 230 ARG 231 GLY 232 LYS 233 VAL 234 VAL 235 ASP 236 THR 237 ASP 238 ALA 239 LEU 240 TYR 241 ARG 242 ALA 243 TYR 244 GLN 245 ARG 246 GLY 247 LYS 248 PHE 249 SER 250 GLY 251 LEU 252 GLY 253 LEU 254 ASP 255 VAL 256 PHE 257 GLU 258 ASP 259 GLU 260 GLU 261 ILE 262 LEU 263 ILE 264 LEU 265 LYS 266 LYS 267 TYR 268 THR 269 GLU 270 GLY 271 LYS 272 ALA 273 THR 274 ASP 275 LYS 276 ASN 277 LEU 278 LYS 279 ILE 280 LEU 281 GLU 282 LEU 283 ALA 284 CYS 285 LYS 286 ASP 287 ASN 288 VAL 289 ILE 290 ILE 291 THR 292 PRO 293 HIS 294 ILE 295 ALA 296 TYR 297 TYR 298 THR 299 ASP 300 LYS 301 SER 302 LEU 303 GLU 304 ARG 305 ILE 306 ARG 307 GLU 308 GLU 309 THR 310 VAL 311 LYS 312 VAL 313 VAL 314 LYS 315 ALA 316 PHE 317 VAL 318 LYS 319 GLY 320 ASP 321 LEU 322 GLU 323 GLN 324 ILE 325 LYS 326 GLY 327 ASN 328 PHE 329 VAL 330 VAL 331 GLY 332 PRO 333 SER 334
Unit 3	MSE 1 ASN 2 VAL 3 LEU 4 PHE 5 THR 6 SER 7 VAL 8 PRO 9 GLN 10 GLU 11 ASP 12 VAL 13 PRO 14 PHE 15 TYR 16 GLN 17 GLU 18 ALA 19 LEU 20 LYS 21 ASP 22 LEU 23 SER 24 LEU 25 LYS 26 ILE 27 TYR 28 THR 29 THR 30 ASP 31 VAL 32 SER 33 LYS 34 VAL 35 PRO 36 GLU 37 ASN 38 GLU 39 LEU 40 LYS 41 LYS 42 ALA 43 GLU 44 LEU 45 ILE 46 SER 47 VAL 48 PHE 49 VAL 50 TYR 51 ASP 52 LYS 53 LEU 54 THR 55 GLU 56 GLU 57 LEU 58 LEU 59 SER 60 LYS 61 MSE 62 PRO 63 ARG 64 LEU 65 LYS 66 LEU 67 ILE 68 HIS 69 THR 70 ARG 71 SER 72 VAL 73 GLY 74 PHE 75 ASP 76 HIS 77 ILE 78 ASP 79 LEU 80 ASP 81 TYR 82 CYS 83 LYS 84 LYS 85 LYS 86 GLY 87 ILE 88 LEU 89 VAL 90 THR 91 HIS 92 ILE 93 PRO 94 ALA 95 TYR 96 SER 97 PRO 98 GLU 99 SER 100 VAL 101 ALA 102 GLU 103 HIS 104 THR 105 PHE 106 ALA 107 MSE 108 ILE 109 LEU 110 THR 111 LEU 112 VAL 113 LYS 114 ARG 115 LEU 116 LYS 117 ARG 118 ILE 119 GLU 120 ASP 121 ARG 122 VAL 123 LYS 124 LYS 125 LEU 126 ASN 127 PHE 128 SER 129 GLN 130 ASP 131 SER 132 GLU 133 ILE 134 LEU 135 ALA 136 ARG 137 GLU 138 LEU 139 ASN 140 ARG 141 LEU 142 THR 143 LEU 144 GLY 145 VAL 146 ILE 147 GLY 148 THR 149 GLY 150 ARG 151 ILE 152 GLY 153 SER 154 ARG 155 VAL 156 ALA 157 MSE 158 TYR 159 GLY 160 LEU 161 ALA 162 PHE 163 GLY 164 MSE 165 LYS 166 VAL 167 LEU 168 CYS 169 TYR 170 ASP 171 VAL 172 VAL 173 LYS 174 ARG 175 GLU 176 ASP 177 LEU 178 LYS 179 GLU 180 LYS 181 GLY 182 CYS 183 VAL 184 TYR 185 THR 186 SER 187 LEU 188 ASP 189 GLU 190 LEU 191 LEU 192 LYS 193 GLU 194 SER 195 ASP 196 VAL 197 ILE 198 SER 199 LEU 200 HIS 201 VAL 202 PRO 203 TYR 204 THR 205 LYS 206 GLU 207 THR 208 HIS 209 HIS 210 MSE 211 ILE 212 ASN 213 GLU 214 GLU 215 ARG 216 ILE 217 SER 218 LEU 219 MSE 220 LYS 221 ASP 222 GLY 223 VAL 224 TYR 225 LEU 226 ILE 227 ASN 228 THR 229 ALA 230 ARG 231 GLY 232 LYS 233 VAL 234 VAL 235 ASP 236 THR 237 ASP 238 ALA 239 LEU 240 TYR 241 ARG 242 ALA 243 TYR 244 GLN 245 ARG 246 GLY 247 LYS 248 PHE 249 SER 250 GLY 251 LEU 252 GLY 253 LEU 254 ASP 255 VAL 256 PHE 257 GLU 258 ASP 259 GLU 260 GLU 261 ILE 262 LEU 263 ILE 264 LEU 265 LYS 266 LYS 267 TYR 268 THR 269 GLU 270 GLY 271 LYS 272 ALA 273 THR 274 ASP 275 LYS 276 ASN 277 LEU 278 LYS 279 ILE 280 LEU 281 GLU 282 LEU 283 ALA 284 CYS 285 LYS 286 ASP 287 ASN 288 VAL 289 ILE 290 ILE 291 THR 292 PRO 293 HIS 294 ILE 295 ALA 296 TYR 297 TYR 298 THR 299 ASP 300 LYS 301 SER 302 LEU 303 GLU 304 ARG 305 ILE 306 ARG 307 GLU 308 GLU 309 THR 310 VAL 311 LYS 312 VAL 313 VAL 314 LYS 315 ALA 316 PHE 317 VAL 318 LYS 319 GLY 320 ASP 321 LEU 322 GLU 323 GLN 324 ILE 325 LYS 326 GLY 327 ASN 328 PHE 329 VAL 330 VAL 331 GLY 332 PRO 333 SER 334
Unit 4	MSE 1 ASN 2 VAL 3 LEU 4 PHE 5 THR 6 SER 7 VAL 8 PRO 9 GLN 10 GLU 11 ASP 12 VAL 13 PRO 14 PHE 15 TYR 16 GLN 17 GLU 18 ALA 19 LEU 20 LYS 21 ASP 22 LEU 23 SER 24 LEU 25 LYS 26 ILE 27 TYR 28 THR 29 THR 30 ASP 31 VAL 32 SER 33 LYS 34 VAL 35 PRO 36 GLU 37 ASN 38 GLU 39 LEU 40 LYS 41 LYS 42 ALA 43 GLU 44 LEU 45 ILE 46 SER 47 VAL 48 PHE 49 VAL 50 TYR 51 ASP 52 LYS 53 LEU 54 THR 55 GLU 56 GLU 57 LEU 58 LEU 59 SER 60 LYS 61 MSE 62 PRO 63 ARG 64 LEU 65 LYS 66 LEU 67 ILE 68 HIS 69 THR 70 ARG 71 SER 72 VAL 73 GLY 74 PHE 75 ASP 76 HIS 77 ILE 78 ASP 79 LEU 80 ASP 81 TYR 82 CYS 83 LYS 84 LYS 85 LYS 86 GLY 87 ILE 88 LEU 89 VAL 90 THR 91 HIS 92 ILE 93 PRO 94 ALA 95 TYR 96 SER 97 PRO 98 GLU 99 SER 100 VAL 101 ALA 102 GLU 103 HIS 104 THR 105 PHE 106 ALA 107 MSE 108 ILE 109 LEU 110 THR 111 LEU 112 VAL 113 LYS 114 ARG 115 LEU 116 LYS 117 ARG 118 ILE 119 GLU 120 ASP 121 ARG 122 VAL 123 LYS 124 LYS 125 LEU 126 ASN 127 PHE 128 SER 129 GLN 130 ASP 131 SER 132 GLU 133 ILE 134 LEU 135 ALA 136 ARG 137 GLU 138 LEU 139 ASN 140 ARG 141 LEU 142 THR 143 LEU 144 GLY 145 VAL 146 ILE 147 GLY 148 THR 149 GLY 150 ARG 151 ILE 152 GLY 153 SER 154 ARG 155 VAL 156 ALA 157 MSE 158 TYR 159 GLY 160 LEU 161 ALA 162 PHE 163 GLY 164 MSE 165 LYS 166 VAL 167 LEU 168 CYS 169 TYR 170 ASP 171 VAL 172 VAL 173 LYS 174 ARG 175 GLU 176 ASP 177 LEU 178 LYS 179 GLU 180 LYS 181 GLY 182 CYS 183 VAL 184 TYR 185 THR 186 SER 187 LEU 188 ASP 189 GLU 190 LEU 191 LEU 192 LYS 193 GLU 194 SER 195 ASP 196 VAL 197 ILE 198 SER 199 LEU 200 HIS 201 VAL 202 PRO 203 TYR 204 THR 205 LYS 206 GLU 207 THR 208 HIS 209 HIS 210 MSE 211 ILE 212 ASN 213 GLU 214 GLU 215 ARG 216 ILE 217 SER 218 LEU 219 MSE 220 LYS 221 ASP 222 GLY 223 VAL 224 TYR 225 LEU 226 ILE 227 ASN 228 THR 229 ALA 230 ARG 231 GLY 232 LYS 233 VAL 234 VAL 235 ASP 236 THR 237 ASP 238 ALA 239 LEU 240 TYR 241 ARG 242 ALA 243 TYR 244 GLN 245 ARG 246 GLY 247 LYS 248 PHE 249 SER 250 GLY 251 LEU 252 GLY 253 LEU 254 ASP 255 VAL 256 PHE 257 GLU 258 ASP 259 GLU 260 GLU 261 ILE 262 LEU 263 ILE 264 LEU 265 LYS 266 LYS 267 TYR 268 THR 269 GLU 270 GLY 271 LYS 272 ALA 273 THR 274 ASP 275 LYS 276 ASN 277 LEU 278 LYS 279 ILE 280 LEU 281 GLU 282 LEU 283 ALA 284 CYS 285 LYS 286 ASP 287 ASN 288 VAL 289 ILE 290 ILE 291 THR 292 PRO 293 HIS 294 ILE 295 ALA 296 TYR 297 TYR 298 THR 299 ASP 300 LYS 301 SER 302 LEU 303 GLU 304 ARG 305 ILE 306 ARG 307 GLU 308 GLU 309 THR 310 VAL 311 LYS 312 VAL 313 VAL 314 LYS 315 ALA 316 PHE 317 VAL 318 LYS 319 GLY 320 ASP 321 LEU 322 GLU 323 GLN 324 ILE 325 LYS 326 GLY 327 ASN 328 PHE 329 VAL 330 VAL 331 GLY 332 PRO 333 SER 334

Ligands

Unit 5	1PE 335 PPI 398 LAC 399 NAD 400 PEG 403 1PE 404 1PE 444 PPI 453 PEG 454 PEG 555 1PE 700 PEG 701 GOL 710 PEG 772 GOL 800 PEG 802 PEG 803
Unit 6	PPI 398 LAC 399 NAD 400 1PE 404 1PE 407 GOL 711 GOL 770 GOL 777 GOL 800 GOL 801 1PE 804
Unit 7	PPI 398 LAC 399 NAD 400 GOL 401 1PE 404 GOL 650 PEG 702 PEG 771
Unit 8	PPI 398 LAC 399 NAD 400 GOL 401 PEG 405 GOL 777