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Sequence, Chains, Asymmetric and Biological Units

Title MACHUPO VIRUS GP1 BOUND TO HUMAN TRANSFERRIN RECEPTOR 1
Keywords MACHUPO VIRUS, TRANSFERRIN RECEPTOR 1, ARENAVIRUS, CELL MEMB DISULFIDE BOND, ENDOCYTOSIS, GLYCOPROTEIN, HOST-VIRUS INTER RECEPTOR, SECRETED, TRANSMEMBRANE, VIRAL PROTEIN-ENDOCYTOSI
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3KAS     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSFERRIN RECEPTOR PROTEIN 1  A 633 5004 0
2  Protein   GLYCOPROTEIN  B 156 1255 0
3  Ligand    C 3 0 38
4  Ligand    D 7 0 83
5  Ligand   TRANSFERRIN RECEPTOR PROTEIN 1  A 7 0 49
6  Ligand   GLYCOPROTEIN  B 4 0 38
7 Water     250 0 250
total       1060 6259 458

Proteins
Unit 1 ARG121 LEU122 TYR123 TRP124 ASP125 ASP126 LEU127 LYS128 ARG129 LYS130 LEU131 SER132 GLU133 LYS134 LEU135 ASP136 SER137 THR138 ASP139 PHE140 THR141 SER142 THR143 ILE144 LYS145 LEU146 LEU147 ASN148 GLU149 ASN150 SER151 TYR152 VAL153 PRO154 ARG155 GLU156 ALA157 GLY158 SER159 GLN160 LYS161 ASP162 GLU163 ASN164 LEU165 ALA166 LEU167 TYR168 VAL169 GLU170 ASN171 GLN172 PHE173 ARG174 GLU175 PHE176 LYS177 LEU178 SER179 LYS180 VAL181 TRP182 ARG183 ASP184 GLN185 HIS186 PHE187 VAL188 LYS189 ILE190 GLN191 VAL192 LYS193 ASP194 SER195 ALA196 GLN197 ASN198 SER199 VAL200 ILE201 ILE202 VAL203 ASP204 LYS205 ASN206 GLY207 ARG208 LEU209 VAL210 TYR211 LEU212 VAL213 GLU214 ASN215 PRO216 GLY217 GLY218 TYR219 VAL220 ALA221 TYR222 SER223 LYS224 ALA225 ALA226 THR227 VAL228 THR229 GLY230 LYS231 LEU232 VAL233 HIS234 ALA235 ASN236 PHE237 GLY238 THR239 LYS240 LYS241 ASP242 PHE243 GLU244 ASP245 LEU246 TYR247 THR248 PRO249 VAL250 ASN251 GLY252 SER253 ILE254 VAL255 ILE256 VAL257 ARG258 ALA259 GLY260 LYS261 ILE262 THR263 PHE264 ALA265 GLU266 LYS267 VAL268 ALA269 ASN270 ALA271 GLU272 SER273 LEU274 ASN275 ALA276 ILE277 GLY278 VAL279 LEU280 ILE281 TYR282 MET283 ASP284 GLN285 THR286 LYS287 PHE288 PRO289 ILE290 VAL291 ASN292 ALA293 GLU294 LEU295 SER296 PHE297 PHE298 GLY299 HIS300 ALA301 HIS302 LEU303 GLY304 THR305 GLY306 ASP307 PRO308 TYR309 THR310 PRO311 GLY312 PHE313 PRO314 SER315 THR319 GLN320 PHE321 PRO322 PRO323 SER324 ARG325 SER326 SER327 GLY328 LEU329 PRO330 ASN331 ILE332 PRO333 VAL334 GLN335 THR336 ILE337 SER338 ARG339 ALA340 ALA341 ALA342 GLU343 LYS344 LEU345 PHE346 GLY347 ASN348 MET349 GLU350 GLY351 ASP352 CYS353 PRO354 SER355 ASP356 TRP357 LYS358 THR359 ASP360 SER361 THR362 CYS363 ARG364 MET365 VAL366 THR367 SER368 GLU369 SER370 LYS371 ASN372 VAL373 LYS374 LEU375 THR376 VAL377 SER378 ASN379 VAL380 LEU381 LYS382 GLU383 ILE384 LYS385 ILE386 LEU387 ASN388 ILE389 PHE390 GLY391 VAL392 ILE393 LYS394 GLY395 PHE396 VAL397 GLU398 PRO399 ASP400 HIS401 TYR402 VAL403 VAL404 VAL405 GLY406 ALA407 GLN408 ARG409 ASP410 ALA411 TRP412 GLY413 PRO414 GLY415 ALA416 ALA417 LYS418 SER419 GLY420 VAL421 GLY422 THR423 ALA424 LEU425 LEU426 LEU427 LYS428 LEU429 ALA430 GLN431 MET432 PHE433 SER434 ASP435 MET436 VAL437 LEU438 LYS439 ASP440 GLY441 PHE442 GLN443 PRO444 SER445 ARG446 SER447 ILE448 ILE449 PHE450 ALA451 SER452 TRP453 SER454 ALA455 GLY456 ASP457 PHE458 GLY459 SER460 VAL461 GLY462 ALA463 THR464 GLU465 TRP466 LEU467 GLU468 GLY469 TYR470 LEU471 SER472 SER473 LEU474 HIS475 LEU476 LYS477 ALA478 PHE479 THR480 TYR481 ILE482 ASN483 LEU484 ASP485 LYS486 ALA487 VAL488 LEU489 GLY490 THR491 SER492 ASN493 PHE494 LYS495 VAL496 SER497 ALA498 SER499 PRO500 LEU501 LEU502 TYR503 THR504 LEU505 ILE506 GLU507 LYS508 THR509 MET510 GLN511 ASN512 VAL513 LYS514 HIS515 PRO516 VAL517 THR518 GLY519 GLN520 PHE521 LEU522 TYR523 GLN524 ASP525 SER526 ASN527 TRP528 ALA529 SER530 LYS531 VAL532 GLU533 LYS534 LEU535 THR536 LEU537 ASP538 ASN539 ALA540 ALA541 PHE542 PRO543 PHE544 LEU545 ALA546 TYR547 SER548 GLY549 ILE550 PRO551 ALA552 VAL553 SER554 PHE555 CYS556 PHE557 CYS558 GLU559 ASP560 THR561 ASP562 TYR563 PRO564 TYR565 LEU566 GLY567 THR568 THR569 MET570 ASP571 THR572 TYR573 LYS574 GLU575 LEU576 ILE577 GLU578 ARG579 ILE580 PRO581 GLU582 LEU583 ASN584 LYS585 VAL586 ALA587 ARG588 ALA589 ALA590 ALA591 GLU592 VAL593 ALA594 GLY595 GLN596 PHE597 VAL598 ILE599 LYS600 LEU601 THR602 HIS603 ASP604 VAL605 GLU606 LEU607 ASN608 LEU609 ASP610 TYR611 GLU612 ARG613 TYR614 ASN615 SER616 GLN617 LEU618 LEU619 SER620 PHE621 VAL622 ARG623 ASP624 LEU625 ASN626 GLN627 TYR628 ARG629 ALA630 ASP631 ILE632 LYS633 GLU634 MET635 GLY636 LEU637 SER638 LEU639 GLN640 TRP641 LEU642 TYR643 SER644 ALA645 ARG646 GLY647 ASP648 PHE649 PHE650 ARG651 ALA652 THR653 SER654 ARG655 LEU656 THR657 THR658 ASP659 PHE660 GLY661 ASN662 ALA663 GLU664 LYS665 THR666 ASP667 ARG668 PHE669 VAL670 MET671 LYS672 LYS673 LEU674 ASN675 ASP676 ARG677 VAL678 MET679 ARG680 VAL681 GLU682 TYR683 HIS684 PHE685 LEU686 SER687 PRO688 TYR689 VAL690 SER691 PRO692 LYS693 GLU694 SER695 PRO696 PHE697 ARG698 HIS699 VAL700 PHE701 TRP702 GLY703 SER704 GLY705 SER706 HIS707 THR708 LEU709 PRO710 ALA711 LEU712 LEU713 GLU714 ASN715 LEU716 LYS717 LEU718 ARG719 LYS720 GLN721 ASN722 ASN723 GLY724 ALA725 PHE726 ASN727 GLU728 THR729 LEU730 PHE731 ARG732 ASN733 GLN734 LEU735 ALA736 LEU737 ALA738 THR739 TRP740 THR741 ILE742 GLN743 GLY744 ALA745 ALA746 ASN747 ALA748 LEU749 SER750 GLY751 ASP752 VAL753 TRP754 ASP755 ILE756
Unit 2 ASN86 GLU87 LEU88 PRO89 SER90 LEU91 CYS92 MET93 LEU94 ASN95 ASN96 SER97 PHE98 TYR99 TYR100 MET101 ARG102 GLY103 GLY104 VAL105 ASN106 THR107 PHE108 LEU109 ILE110 ARG111 VAL112 SER113 ASP114 ILE115 SER116 VAL117 LEU118 MET119 LYS120 GLU121 TYR122 ASP123 VAL124 SER125 ILE126 TYR127 GLU128 PRO129 GLU130 ASP131 LEU132 GLY133 ASN134 CYS135 LEU136 ASN137 LYS138 SER139 ASP140 SER141 SER142 TRP143 ALA144 ILE145 HIS146 TRP147 PHE148 SER149 ASN150 ALA151 LEU152 GLY153 HIS154 ASP155 TRP156 LEU157 MET158 ASP159 PRO160 PRO161 MET162 LEU163 CYS164 ARG165 ASN166 LYS167 THR168 LYS169 LYS170 GLU171 GLY172 SER173 ASN174 ILE175 GLN176 PHE177 ASN178 ILE179 SER180 LYS181 ALA182 ASP183 ASP184 ALA185 ARG186 VAL187 TYR188 GLY189 LYS190 LYS191 ILE192 ARG193 ASN194 GLY195 MET196 ARG197 HIS198 LEU199 PHE200 ARG201 GLY202 PHE203 HIS204 ASP205 PRO206 CYS207 GLU208 GLU209 GLY210 LYS211 VAL212 CYS213 TYR214 LEU215 THR216 ILE217 ASN218 GLN219 CYS220 GLY221 ASP222 PRO223 SER224 SER225 PHE226 ASP227 TYR228 CYS229 GLY230 VAL231 ASN232 HIS233 LEU234 SER235 LYS236 CYS237 GLN238 PHE239 ASP240 HIS241

Ligands
Unit 3 NAG1 NAG2 FUC3
Unit 4 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7
Unit 5 K1 PO42 PO43 PO44 PO46 NAG1001 NAG1011
Unit 6 PO41 PO45 NAG1001 NAG1011

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany